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  1. 1.   Harnessing molecular recognition for small molecule-mediated, reversible photochemical control over mRNA translation
  2. Parmar,Shaifaly; Tenney, Logan; Liang, Xiao; Routzahn,John; Sibley, Christopher D; Schneekloth,John
  3. Angewandte Chemie (International ed. in English). 2025, Mar 31; e202503078.
  1. 2.   Crystal structure of Escherichia coli thiamine pyrophosphate-sensing riboswitch in the apo state
  2. Lee,Hyun Kyung; Lee,Yun-Tzai; Fan,Lixin; Wilt, Haley M; Conrad, Chelsie E; Yu,Ping; Zhang, Jinwei; Shi,Genbin; Ji,Xinhua; Wang,Yun-Xing; Stagno,Jason
  3. Structure (London, England : 1993). 2023, Jul 7; 31(7): 848-859..
  1. 3.   Toehold-Mediated Shape Transition of Nucleic Acid Nanoparticles
  2. Hartung, Jordan; McCann, Nathan; Doe, Erwin; Hayth, Hannah; Benkato, Kheiria; Johnson, M Brittany; Viard,Mathias; Afonin, Kirill A; Khisamutdinov, Emil F
  3. ACS Applied Materials & Interfaces. 2023, May 19; 15(21): 25300-25312.
  1. 4.   Locking and Unlocking Thrombin Function Using Immunoquiescent Nucleic Acid Nanoparticles with Regulated Retention In Vivo
  2. Ke, Weina; Chandler, Morgan; Cedrone,Edward; Saito, Renata F; Rangel, Maria Cristina; de Souza Junqueira, Mara; Wang, Jian; Shi, Da; Truong, Nguyen; Richardson, Melina; Rolband, Lewis A; Dréau, Didier; Bedocs, Peter; Chammas, Roger; Dokholyan, Nikolay V; Dobrovolskaia,Marina; Afonin, Kirill A
  3. Nano Letters. 2022, Jul 05;
  1. 5.   Adaptive in vivo device for theranostics of inflammation: real-time monitoring of interferon-? and aspirin
  2. Cao, Chaomin; Jin, Ronghua; Wei, Hui; Liu, Zhongning; Ni, Shengnan; Liu, Guo-Jun; Young,Howard; Chen, Xin; Liu, Guozhen
  3. Acta biomaterialia. 2020, Jan 1; 101: 372-383.
  1. 6.   Conformational flexibility of adenine riboswitch aptamer in apo and bound states using NMR and an X-ray free electron laser
  2. Ding,Jienyu; Swain,Monalisa; Yu,Ping; Stagno,Jason; Wang,Yun-Xing
  3. Journal of biomolecular NMR. 2019, Oct 12; 73: 509-518.
  1. 7.   Co-crystal structure of the iMango-III fluorescent RNA aptamer using an X-ray free-electron laser
  2. Trachman, Robert J; Stagno,Jason; Conrad, Chelsie; Jones, Christopher P; Fischer, Pontus; Meents, Alke; Wang, Yun Xing; Ferré-D'Amaré, Adrian R
  3. Acta crystallographica. Section F, Structural biology communications. 2019, Aug 01; 75(Pt 8): 547-551.
  1. 8.   Synthetic ligands for PreQ(1) riboswitches provide structural and mechanistic insights into targeting RNA tertiary structure
  2. Connelly,Colleen; Numata, Tomoyuki; Boer, Robert E.; Moon, Michelle H.; Sinniah, Ranu S.; Barchi,Joe; Ferre-D'Amare, Adrian R.; Schneekloth,Jay
  3. Nature communications. 2019, Apr 2; 10(1):
  1. 9.   Measuring RNA-Ligand Interactions with Microscale Thermophoresis
  2. Moon, Michelle H.; Hilimire, Thomas A.; Sanders, Allix M.; Schneekloth, Jay
  3. BIOCHEMISTRY. 2018, Aug 7; 57(31): 4638-4643.
  1. 10.   Self-Assembling RNA Nanorings Based on RNAI/II Inverse Kissing Complexes
  2. Grabow, W. W.; Zakrevsky, P.; Afonin, K. A.; Chworos, A.; Shapiro, B. A.; Jaeger, L.
  3. Nano Letters. 2011, Feb; 11(2): 878-887.
  1. 11.   The use of conformationally rigid nucleoside probes to study the role of sugar pucker and nucleobase orientation in the thrombin binding aptamer
  2. Saneyoshi, H.; Mazzini, S.; Avino, A.; Portella, G.; Gonzalez, C.; Orozco, M.; Marquez, V. E.; Eritja, R.
  3. Nucleic acids symposium series (2004). 2009 (53): 109-10.
  1. 12.   Conformationally rigid nucleoside probes help understand the role of sugar pucker and nucleobase orientation in the thrombin-binding aptamer
  2. Saneyoshi, H.; Mazzini, S.; Avino, A.; Portella, G.; Gonzalez, C.; Orozco, M.; Marquez, V. E.; Eritja, R.
  3. Nucleic Acids Research. 2009 37(17): 5589-5601.
  1. 13.   Computational strategies for the automated design of RNA nanoscale structures from building blocks using NanoTiler
  2. Bindewald, E.; Grunewald, C.; Boyle, B.; O'Connor, M.; Shapiro, B. A.
  3. Journal of Molecular Graphics & Modelling. 2008 27(3): 299-308.
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