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  1. 1.   Engineering and characterization of apH-sensitive homodimeric antiparallel coiled coil
  2. Nagarkar, Radhika P.; Fichman, Galit; Schneider,Joel
  3. PEPTIDE SCIENCE. 2020, AUG 14;
  1. 2.   Triggered Formation of Anionic Hydrogels from Self-Assembling Acidic Peptide Amphiphiles
  2. Sinthuvanich, Chomdao; Nagy-Smith, Katelyn J.; Walsh, Scott; Schneider, Joel
  3. Macromolecules. 2017, Aug 08; 50(15): 5643-5651.
  1. 3.   Self assembled bi-functional peptide hydrogels with biomineralization-directing peptides
  2. Gungormus, M.; Branco, M.; Fong, H.; Schneider, J. P.; Tamerler, C.; Sarikaya, M.
  3. Biomaterials. 2010, Oct; 31(28): 7266-7274.
  1. 4.   De Novo Design of a Shear-Thin Recoverable Peptide-Based Hydrogel Capable of Intrafibrillar Photopolymerization
  2. Rughani, R. V.; Branco, M. C.; Pochan, D.; Schneider, J. P.
  3. Macromolecules. 2010, Oct; 43(19): 7924-7930.
  1. 5.   Testing beta-helix terminal coils stability by targeted substitutions with non-proteogenic amino acids: A molecular dynamics study
  2. Zanuy, D.; Rodriguez-Ropero, F.; Nussinov, R.; Aleman, C.
  3. Journal of Structural Biology. 2007, Nov; 160(2): 177-189.
  1. 6.   EMatch: an efficient method for aligning atomic resolution subunits into intermediate-resolution cryo-EM maps of large macromolecular assemblies
  2. Dror, O.; Lasker, K.; Nussinov, R.; Wolfson, H.
  3. Acta Crystallographica Section D-Biological Crystallography. 2007, Jan; 63: 42-49.
  1. 7.   EMatch: Discovery of high resolution structural homologues of protein domains in intermediate resolution cryo-EM maps
  2. Lasker, K.; Dror, O.; Shatsky, M.; Nussinov, R.; Wolfson, H. J.
  3. Ieee-Acm Transactions on Computational Biology and Bioinformatics. 2007, Jan-Mar; 4(1): 28-39.
  1. 8.   Simulations as analytical tools to understand protein aggregation and predict amyloid conformation
  2. Ma, B. Y.; Nussinov, R.
  3. Current Opinion in Chemical Biology. 2006, Oct; 10(5): 445-452.
  1. 9.   Structural mimicry of CD4 by a cross-reactive HIV-1 neutralizing antibody with CDR-H2 and H3 containing unique motifs
  2. Prabakaran, P.; Gan, J. H.; Wu, Y. Q.; Zhang, M. Y.; Dimitrov, D. S.; Ji, X. H.
  3. Journal of Molecular Biology. 2006, MAR 17; 357(1): 82-99.
  1. 10.   Energy landscape of amyloidogenic peptide oligomerization by parallel-tempering molecular dynamics simulation: Significant role of Asn ladder
  2. Tsai, H. H.; Reches, M.; Tsai, C. J.; Gunasekaran, K.; Gazit, E.; Nussinov, R.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2005, JUN 7; 102(23): 8174-8179.
  1. 11.   A comparative study of amyloid fibril formation by residues 15-19 of the human calcitonin hormone: A single beta-sheet model with a small hydrophobic core
  2. Haspel, N.; Zanuy, D.; Ma, B. Y.; Wolfson, H.; Nussinov, R.
  3. Journal of Molecular Biology. 2005, FEB 4; 345(5): 1213-1227.
  1. 12.   The role of the cyclic peptide backbone in the anti-HIV activity of the cyclotide kalata B1
  2. Daly, N. L.; Gustafson, K. R.; Craik, D. J.
  3. Febs Letters. 2004, SEP 10; 574(1-3): 69-72.
  1. 13.   Insights into amyloid structural formation and assembly through computational approaches
  2. Zanuy, D.; Gunasekaran, K.; Ma, B. Y.; Tsai, H. H.; Tsai, C. J.; Nussinov, R.
  3. Amyloid-Journal of Protein Folding Disorders. 2004, SEP; 11(3): 143-161.
  1. 14.   Peptide sequence and amyloid formation: Molecular simulations and experimental study of a human islet amyloid polypeptide fragment and its analogs
  2. Zanuy, D.; Porat, Y.; Gazit, E.; Nussinov, R.
  3. Structure. 2004 12(3): 439-455.
  1. 15.   Short peptide amyloid organization: Stabilities and conformations of the islet amyloid peptide NFGAIL
  2. Zanuy, D.; Ma, B. Y.; Nussinov, R.
  3. Biophysical Journal. 2003 84(3): 1884-1894.
  1. 16.   The sequence dependence of fiber organization. A comparative molecular dynamics study of the islet amyloid polypeptide segments 22-27 and 22-29
  2. Zanuy, D.; Nussinov, R.
  3. Journal of Molecular Biology. 2003 329(3): 565-584.
  1. 17.   Molecular dynamics simulations of the unfolding of beta(2)- microglobulin and its variants
  2. Ma, B.; Nussinov, R.
  3. Protein Engineering. 2003 16(8): 561-575.
  1. 18.   Conservation and amyloid formation: A study of the gelsolin- like family
  2. Benyamini, H.; Gunasekaran, K.; Wolfson, H.; Nussinov, R.
  3. Proteins-Structure Function and Genetics. 2003 51(2): 266-282.
  1. 19.   Stabilities and conformations of Alzheimer's beta-amyloid peptide oligomers (A beta(16-22 ') A beta(16-35 ') and A beta(10-35)): Sequence effects
  2. Ma, B. Y.; Nussinov, R.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2002 99(22): 14126-14131.
  1. 20.   Molecular dynamics simulations of alanine rich beta-sheet oligomers: Insight into amyloid formation
  2. Ma, B. Y.; Nussinov, R.
  3. Protein Science. 2002 11(10): 2335-2350.
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