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  1. 1.   Small GTPase Ran: Depicting the nucleotide-specific conformational landscape of the functionally important C-terminus
  2. Czigleczki, Janka; de Resende Lara, Pedro Tulio; Dudas, Balint; Jang,Hyunbum; Perahia, David; Nussinov,Ruth; Balog, Erika
  3. Frontiers in Molecular Biosciences. 2023, Jan 16; 10: 1111574.
  1. 2.   Application of Molecular Dynamics to Expand Docking Program's Exploratory Capabilities and to Evaluate Its Predictions
  2. Kasprzak,Wojciech; Shapiro,Bruce
  3. Methods in Molecular Biology (Clifton, N.J.). 2023 2568: 75-101.
  1. 3.   Conformational dynamics of the hepatitis B virus pre-genomic RNA on multiple time scales: implications for viral replication
  2. Olenginski, Lukasz T; Kasprzak,Wojciech; Bergonzo, Christina; Shapiro,Bruce; Dayie, Theodore K
  3. Journal of Molecular Biology. 2022, May 17; 434(18): 167633.
  1. 4.   The mechanism driving a solid-solid phase transition in a biomacromolecular crystal
  2. Ramakrishnan, Saminathan; Stagno,Jason; Heinz,Will; Zuo, Xiaobing; Yu,Ping; Wang,Yun-Xing
  3. IUCrJ. 2021, Jul 01; 8(Pt 4): 655-664.
  1. 5.   Inhibition of Nonfunctional Ras
  2. Nussinov,Ruth; Jang, Hyunbum; Gursoy, Attila; Keskin, Ozlem; Gaponenko, Vadim
  3. Cell Chemical Biology. 2021, Feb 18; 28(2): 121-133.
  1. 6.   The Role of Conformational Dynamics in the Recognition and Regulation of Ubiquitination
  2. Khago, Domarin; Fucci,Ian; Byrd,Robert
  3. Molecules (Basel, Switzerland). 2020, Dec 15; 25(24):
  1. 7.   Automated Design by Structure-Based Stabilization and Consensus Repair to Achieve Prefusion-Closed Envelope Trimers in a Wide Variety of HIV Strains
  2. Rawi, Reda; Rutten, Lucy; Lai, Yen-Ting; Olia, Adam S; Blokland, Sven; Juraszek, Jarek; Shen, Chen-Hsiang; Tsybovsky,Yaroslav; Verardi, Raffaello; Yang, Yongping; Zhang, Baoshan; Zhou, Tongqing; Chuang, Gwo-Yu; Kwong, Peter D; Langedijk, Johannes P M
  3. Cell reports. 2020, Nov 24; 33(8): 108432.
  1. 8.   Engineering and characterization of apH-sensitive homodimeric antiparallel coiled coil
  2. Nagarkar, Radhika P.; Fichman, Galit; Schneider,Joel
  3. PEPTIDE SCIENCE. 2020, AUG 14;
  1. 9.   Nucleotide-Specific Autoinhibition of Full-Length K-Ras4B Identified by Extensive Conformational Sampling
  2. Dudas, Balint; Merzel, Franci; Jang,Hyunbum; Nussinov,Ruth; Perahia, David; Balog, Erika
  3. Frontiers in molecular biosciences. 2020, JUL 10; 7: 145.
  1. 10.   Achieving pure spin effects by artifact suppression in methyl adiabatic relaxation experiments
  2. Chao,Fa-An; Khago,Domarin; Byrd,Robert
  3. Journal of biomolecular NMR. 2020, May; 74(4-5): 223-228.
  1. 11.   Heat Shock Factor 1 Is a Direct Antagonist of AMP-Activated Protein Kinase
  2. Su,Kuo-Hui; Dai, Siyuan; Tang,Zijian; Xu,Meng; Dai,Chengkai
  3. Molecular cell. 2019, Nov 21; 76(4): 546-561.e8.
  1. 12.   Conformational flexibility of adenine riboswitch aptamer in apo and bound states using NMR and an X-ray free electron laser
  2. Ding,Jienyu; Swain,Monalisa; Yu,Ping; Stagno,Jason; Wang,Yun-Xing
  3. Journal of biomolecular NMR. 2019, Oct 12; 73: 509-518.
  1. 13.   De novo design of selective membrane-active peptides via enzymatic control of their conformational bias on the cell surface
  2. Shi,Junfeng; Schneider,Joel
  3. Angewandte Chemie (International ed. in English). 2019, JUL 26;
  1. 14.   Developments in integrative modeling with dynamical interfaces
  2. Ozdemir, E. Sila; Nussinov,Ruth; Gursoy, Attila; Keskin, Ozlem
  3. CURRENT OPINION IN STRUCTURAL BIOLOGY. 2019, Jun; 56: 11-17.
  1. 15.   Allostery in Its Many Disguises: From Theory to Applications
  2. Wodak, Shoshana J.; Paci, Emanuele; Dokholyan, Nikolay; Berezovsky, Igor N.; Horovitz, Amnon; Li, Jing; Hilser, Vincent J.; Behar, Ivet; Karanicolas, John; Stock, Gerhard; Hamm, Peter; Stote, Roland H.; Eberhardt, Jerome; Chebaro, Yassmine; Dejaegere, Annick; Cecchini, Marco; Changeux, Jean-Pierre; Bolhuis, Peter G.; Vreede, Jocelyne; Faccioli, Pietro; Orioli, Simone; Ravasio, Riccardo; Yen, Le; Brito, Carolina; Wyart, Matthieu; Gkeka, Paraskevi; Rivalta, Ivan; Palermo, Giulia; Mccammon, J. Andrew; Panecka-Hofman, Joanna; Wade, Rebecca C.; Di Pizio, Antonella; Niv, Masha Y.; Nussinov,Ruth; Tsai,Chung-Jung; Jang,Hyunbum; Padhorny, Dzmitry; Kozakov, Dima; Mcleish, Tom
  3. Structure (London, England : 1993). 2019, Apr 2; 27(4): 566-578.
  1. 16.   Antigen binding allosterically promotes Fc receptor recognition
  2. Zhao, Jun; Nussinov, Ruth; Ma, Buyong
  3. mAbs. 2019, Jan; 11(1): 58-74.
  1. 17.   Structure-based design of a quadrivalent fusion glycoprotein vaccine for human parainfluenza virus types 1-4
  2. Stewart-Jones, Guillaume B E; Chuang, Gwo-Yu; Xu, Kai; Zhou, Tongqing; Acharya, Priyamvada; Tsybovsky, Yaroslav; Ou, Li; Zhang, Baoshan; Fernandez-Rodriguez, Blanca; Gilardi, Valentina; Silacci-Fregni, Chiara; Beltramello, Martina; Baxa, Ulrich; Druz, Aliaksandr; Kong, Wing-Pui; Thomas, Paul V; Yang, Yongping; Foulds, Kathryn E; Todd, John-Paul; Wei, Hui; Salazar, Andres M; Scorpio, Diana G; Carragher, Bridget; Potter, Clinton S; Corti, Davide; Mascola, John R; Lanzavecchia, Antonio; Kwong, Peter D
  3. Proceedings of the National Academy of Sciences of the United States of America. 2018, Nov 27; 115(48): 12265-12270.
  1. 18.   Structural disorder in four-repeat Tau fibrils reveals a new mechanism for barriers to cross-seeding of Tau isoforms
  2. Weismiller, Hilary A.; Murphy, Rachel; Wei, Guanghong; Ma,Buyong; Nussinov,Ruth; Margittai, Martin
  3. JOURNAL OF BIOLOGICAL CHEMISTRY. 2018, NOV 9; 293(45): 17336-17348.
  1. 19.   Coupling between conformational dynamics and catalytic function at the active site of the lead-dependent ribozyme
  2. White, Neil A.; Sumita, Minako; Marquez,Victor; Hoogstraten, Charles G.
  3. RNA. 2018, Nov; 24(11): 1542-1554.
  1. 20.   Histidine N(t)-cyclized macrocycles as a new genre of polo-like kinase 1 polo-box domain-binding inhibitors
  2. Hymel, David; Grant, Robert A; Tsuji, Kohei; Yaffe, Michael B; Burke, Terrence
  3. Bioorganic & medicinal chemistry letters. 2018, Oct 15; 28(19): 3202-3205.
  1. 21.   Peptide-MHC (pMHC) binding to a human antiviral T cell receptor induces long-range allosteric communication between pMHC- and CD3-binding sites
  2. Rangarajan, Sneha; He, Yanan; Chen, Yihong; Kerzic, Melissa C.; Ma,Buyong; Gowthaman, Ragul; Pierce, Brian G.; Nussinov,Ruth; Mariuzza, Roy A.; Orban, John
  3. JOURNAL OF BIOLOGICAL CHEMISTRY. 2018, Oct 12; 293(41): 15991-16005.
  1. 22.   Enzymatic Control of the Conformational Landscape of Supramolecular Assembling Peptides
  2. Shi, Junfeng; Fichman, Gali; Schneider, Joel
  3. Angewandte Chemie (International ed. in English). 2018, Aug 27; 57(35): 11188-11192.
  1. 23.   alpha-Arylidene Diacylglycerol-Lactones (DAG-Lactones) as Selective Ras Guanine-Releasing Protein 3 (RasGRP3) Ligands
  2. Ann, Jihyae; Czikora, Agnes; Saini, Amandeep S.; Zhou, Xiaoling; Mitchell, Gary A.; Lewin, Nancy E.; Peach, Megan; Blumberg, Peter M.; Lee, Jeewoo
  3. Journal of Medicinal Chemistry. 2018, Jul 26; 61(14): 6261-6276.
  1. 24.   Interdomain Stabilization Impairs CD4 Binding and Improves Immunogenicity of the HIV-1 Envelope Trimer
  2. Zhang, Peng; Gorman, Jason; Geng, Hui; Liu, Qingbo; Lin, Yin; Tsybovsky, Yaroslav; Go, Eden P; Dey, Barna; Andine, Tsion; Kwon, Alice; Patel, Mit; Gururani, Deepali; Uddin, Ferzan; Guzzo, Christina; Cimbro, Raffaello; Miao, Huiyi; McKee, Krisha; Chuang, Gwo-Yu; Martin, Loïc; Sironi, Francesca; Malnati, Mauro S; Desaire, Heather; Berger, Edward A; Mascola, John R; Dolan, Michael A; Kwong, Peter D; Lusso, Paolo
  3. Cell Host & Microbe. 2018, Jun 13; 23(6): 832-844.e6.
  1. 25.   Soluble Prefusion Closed DS-SOSIP.664-Env Trimers of Diverse HIV-1 Strains
  2. Joyce, M Gordon; Georgiev, Ivelin S; Yang, Yongping; Druz, Aliaksandr; Geng, Hui; Chuang, Gwo-Yu; Kwon, Young Do; Pancera, Marie; Rawi, Reda; Sastry, Mallika; Stewart-Jones, Guillaume B E; Zheng, Angela; Zhou, Tongqing; Choe, Misook; Van Galen, Joseph G; Chen, Rita E; Lees, Christopher R; Narpala, Sandeep; Chambers, Michael; Tsybovsky, Yaroslav; Baxa, Ulrich; McDermott, Adrian B; Mascola, John R; Kwong, Peter D
  3. Cell reports. 2017, Dec 05; 21(10): 2992-3002.
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