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  1. 1.   The mechanism driving a solid-solid phase transition in a biomacromolecular crystal
  2. Ramakrishnan, Saminathan; Stagno,Jason; Heinz,Will; Zuo, Xiaobing; Yu,Ping; Wang,Yun-Xing
  3. IUCrJ. 2021, Jul 01; 8(Pt 4): 655-664.
  1. 2.   Structure-based design of a quadrivalent fusion glycoprotein vaccine for human parainfluenza virus types 1-4
  2. Stewart-Jones, Guillaume B E; Chuang, Gwo-Yu; Xu, Kai; Zhou, Tongqing; Acharya, Priyamvada; Tsybovsky, Yaroslav; Ou, Li; Zhang, Baoshan; Fernandez-Rodriguez, Blanca; Gilardi, Valentina; Silacci-Fregni, Chiara; Beltramello, Martina; Baxa, Ulrich; Druz, Aliaksandr; Kong, Wing-Pui; Thomas, Paul V; Yang, Yongping; Foulds, Kathryn E; Todd, John-Paul; Wei, Hui; Salazar, Andres M; Scorpio, Diana G; Carragher, Bridget; Potter, Clinton S; Corti, Davide; Mascola, John R; Lanzavecchia, Antonio; Kwong, Peter D
  3. Proceedings of the National Academy of Sciences of the United States of America. 2018, Nov 27; 115(48): 12265-12270.
  1. 3.   Structural disorder in four-repeat Tau fibrils reveals a new mechanism for barriers to cross-seeding of Tau isoforms
  2. Weismiller, Hilary A.; Murphy, Rachel; Wei, Guanghong; Ma,Buyong; Nussinov,Ruth; Margittai, Martin
  3. JOURNAL OF BIOLOGICAL CHEMISTRY. 2018, NOV 9; 293(45): 17336-17348.
  1. 4.   Peptide-MHC (pMHC) binding to a human antiviral T cell receptor induces long-range allosteric communication between pMHC- and CD3-binding sites
  2. Rangarajan, Sneha; He, Yanan; Chen, Yihong; Kerzic, Melissa C.; Ma,Buyong; Gowthaman, Ragul; Pierce, Brian G.; Nussinov,Ruth; Mariuzza, Roy A.; Orban, John
  3. JOURNAL OF BIOLOGICAL CHEMISTRY. 2018, Oct 12; 293(41): 15991-16005.
  1. 5.   Enzymatic Control of the Conformational Landscape of Supramolecular Assembling Peptides
  2. Shi, Junfeng; Fichman, Gali; Schneider, Joel
  3. Angewandte Chemie (International ed. in English). 2018, Aug 27; 57(35): 11188-11192.
  1. 6.   Interdomain Stabilization Impairs CD4 Binding and Improves Immunogenicity of the HIV-1 Envelope Trimer
  2. Zhang, Peng; Gorman, Jason; Geng, Hui; Liu, Qingbo; Lin, Yin; Tsybovsky, Yaroslav; Go, Eden P; Dey, Barna; Andine, Tsion; Kwon, Alice; Patel, Mit; Gururani, Deepali; Uddin, Ferzan; Guzzo, Christina; Cimbro, Raffaello; Miao, Huiyi; McKee, Krisha; Chuang, Gwo-Yu; Martin, Loïc; Sironi, Francesca; Malnati, Mauro S; Desaire, Heather; Berger, Edward A; Mascola, John R; Dolan, Michael A; Kwong, Peter D; Lusso, Paolo
  3. Cell Host & Microbe. 2018, Jun 13; 23(6): 832-844.e6.
  1. 7.   Allostery modulates the beat rate of a cardiac pacemaker
  2. Tsai, Chung-Jung; Nussinov, Ruth
  3. The Journal of Biological Chemistry. 2017, Apr 14; 292(15): 6429-6430.
  1. 8.   A novel ATP-dependent conformation in p97 N-D1 fragment revealed by crystal structures of disease-related mutants
  2. Tang, W. K.; Li, D. Y.; Li, C. C.; Esser, L.; Dai, R. M.; Guo, L. A.; Xia, D.
  3. Embo Journal. 2010, Jul; 29(13): 2217-2229.
  1. 9.   Structure of severe acute respiratory syndrome coronavirus receptor-binding domain complexed with neutralizing antibody
  2. Prabakaran, P.; Gan, J. H.; Feng, Y.; Zhu, Z. Y.; Choudhry, V.; Xiao, X. D.; Ji, X. H.; Dimitrov, D. S.
  3. Journal of Biological Chemistry. 2006, JUN 9; 281(23): 15829-15836.
  1. 10.   Optimization of multiple-sequence alignment based on multiple-structure alignment
  2. Shatsky, M.; Nussinov, R.; Wolfson, H. J.
  3. Proteins-Structure Function and Bioinformatics. 2006, JAN 1; 62(1): 209-217.
  1. 11.   Cytokinesis regulator ECT2 changes its conformation through phosphorylation at Thr-341 in G2/M phase
  2. Hara, T.; Abe, M.; Inoue, H.; Yu, L. R.; Veenstra, T. D.; Kang, Y. H.; Lee, K. S.; Miki, T.
  3. Oncogene. 2006, JAN; 25(4): 566-578.
  1. 12.   Human P2Y(6) receptor: Molecular modeling leads to the rational design of a novel agonist based on a unique conformational preference
  2. Costanzi, S.; Joshi, B. V.; Maddileti, S.; Mamedova, L.; Gonzalez-Moa, M. J.; Marquez, V. E.; Harden, T. K.; Jacobson, K. A.
  3. Journal of Medicinal Chemistry. 2005, DEC 29; 48(26): 8108-8111.
  1. 13.   Multifunctional roles of the conserved arg residues in the second region of homology of p97/valosin-containing protein
  2. Wang, Q.; Song, C. C.; Irizarry, L.; Dai, R. M.; Zhang, X. D.; Li, C. C. H.
  3. Journal of Biological Chemistry. 2005, DEC 9; 280(49): 40515-40523.
  1. 14.   Oligosaccharide preferences of beta 1,4-galactosyltransferase-I: Crystal structures of Met340His mutant of human beta 1,4-galactosyltransferase-I with a pentasaccharide and trisaccharides of the N-glycan moiety
  2. Ramasamy, V.; Ramakrishnan, B.; Boeggeman, E.; Ratner, D. M.; Seeberger, P. H.; Qasba, P. K.
  3. Journal of Molecular Biology. 2005, OCT 14; 353(1): 53-67.
  1. 15.   Binding affinity difference induced by the stereochemistry of the sulfoxide bridge of the cyclic peptide inhibitors of Grb2-SH2 domain: NMR studies for the structural origin
  2. Shi, Y. H.; Song, Y. L.; Lin, D. H.; Tan, J. Z.; Roller, P. P.; Li, Q.; Long, Y. Q.; Song, G. Q.
  3. Biochemical and Biophysical Research Communications. 2005, MAY 20; 330(4): 1254-1261.
  1. 16.   Release factors eRF1 and RF2: A universal mechanism controls the large conformational changes
  2. Ma, B. Y.; Nussinov, R.
  3. Biophysical Journal. 2005, JAN; 88(1, Part 2, Suppl. S): 210A-210A.
  1. 17.   Substrate-induced conformational changes in glycosyltransferases
  2. Qasba, P. K.; Ramakrishnan, B.; Boeggeman, E.
  3. Trends in Biochemical Sciences. 2005, JAN; 30(1): 53-62.
  1. 18.   Release factors eRF1 and RF2 - A universal mechanism controls the large conformational changes
  2. Ma, B. Y.; Nussinov, R.
  3. Journal of Biological Chemistry. 2004, DEC 17; 279(51): 53875-53885.
  1. 19.   Is allostery an intrinsic property of all dynamic proteins?
  2. Gunasekaran, K.; Ma, B. Y.; Nussinov, R.
  3. Proteins-Structure Function and Bioinformatics. 2004, NOV 15; 57(3): 433-443.
  1. 20.   Effect of the Met344His mutation on the conformational dynamics of bovine beta-1,4-galactosyltransferase: Crystal structure of the Met344His mutant in complex with chitobiose
  2. Ramakrishnan, B.; Boeggeman, E.; Qasba, P. K.
  3. Biochemistry. 2004, OCT 5; 43(39): 12513-12522.
  1. 21.   Virus entry: Molecular mechanisms and biomedical applications
  2. Dimitrov, D. S.
  3. Nature Reviews Microbiology. 2004 2(2): 109-122.
  1. 22.   Essential roles of a dynamic loop in the catalysis of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase
  2. Blaszczyk, J.; Li, Y.; Wu, Y.; Shi, G. B.; Ji, X. H.; Yan, H. G.
  3. Biochemistry. 2004 43(6): 1469-1477.
  1. 23.   Modulating functional loop movements: The role of highly conserved residues in the correlated loop motions
  2. Gunasekaran, K.; Nussinov, R.
  3. Chembiochem. 2004 5(2): 224-230.
  1. 24.   Nonnucleoside inhibitor binding affects the interactions of the fingers subdomain of human immunodeficiency virus type 1 reverse transcriptase with DNA
  2. Peletskaya, E. N.; Kogon, A. A.; Tuske, S.; Arnold, E.; Hughes, S. H.
  3. Journal of Virology. 2004 78(7): 3387-3397.
  1. 25.   Interdependence of backbone flexibility, residue conservation, and enzyme function: A case study on 1,4-galactosyltransferase- I
  2. Gunasekaran, K.; Ma, B. Y.; Ramakrishnan, B.; Qasba, P. K.; Nussinov, R.
  3. Biochemistry. 2003 42(13): 3674-3687.
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