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  1. 1.   An Evolutionarily Conserved AU-Rich Element in the 3' Untranslated Region of a Transcript Misannotated as a Long Noncoding RNA Regulates RNA Stability
  2. Dangelmaier, Emily A; Li, Xiao Ling; Hartford, Corrine Corrina R; King,Julianna; Zibitt, Meira S; Chari,Raj; Grammatikakis, Ioannis; Lal, Ashish
  3. Molecular and cellular biology. 2022, Mar 10; e0050521.
  1. 2.   Influenza Antigens NP and M2 Confer Cross Protection to BALB/c Mice against Lethal Challenge with H1N1, Pandemic H1N1 or H5N1 Influenza A Viruses
  2. Mytle, Nutan; Leyrer, Sonja; Inglefield,Jon; Harris, Andrea M; Hickey,Thomas; Minang, Jacob; Lu, Hang; Ma, Zhidong; Andersen, Hanné; Grubaugh, Nathan D; Guina, Tina; Skiadopoulos, Mario H; Lacy, Michael J
  3. Viruses. 2021, Aug 27; 13(9):
  1. 3.   Diversity and Complexity of the Large Surface Protein Family in the Compacted Genomes of Multiple Pneumocystis Species
  2. Ma, Liang; Chen, Zehua; Huang,Dawei; Cissé, Ousmane H; Rothenburger, Jamie L; Latinne, Alice; Bishop, Lisa; Blair, Robert; Brenchley, Jason M; Chabé, Magali; Deng, Xilong; Hirsch, Vanessa; Keesler, Rebekah; Kutty, Geetha; Liu, Yueqin; Margolis, Daniel; Morand, Serge; Pahar, Bapi; Peng, Li; Van Rompay, Koen K A; Song, Xiaohong; Song, Jun; Sukura, Antti; Thapar, Sabrina; Wang, Honghui; Weissenbacher-Lang, Christiane; Xu, Jie; Lee, Chao-Hung; Jardine, Claire; Lempicki, Richard A; Cushion, Melanie T; Cuomo, Christina A; Kovacs, Joseph A
  3. mBio. 2020, Mar-Apr; 11(2):
  1. 4.   Gag and Env Conserved Element CE DNA Vaccines Elicit Broad Cytotoxic T Cell Responses Targeting Subdominant Epitopes of HIV and SIV Able to Recognize Virus-infected Cells in Macaques
  2. Hu, Xintao; Lu, Zhongyan; Valentin, Antonio; Rosati, Margherita; Broderick, Kate E; Sardesai, Niranjan Y; Marx, Preston A; Mullins, James I; Pavlakis, George; Felber, Barbara
  3. Human Vaccines & Immunotherapeutics. 2018, Jun 25; 14(9): 2163-2177.
  1. 5.   Therapeutic conserved elements (CE) DNA vaccine induces strong T-cell responses against highly conserved viral sequences during simian-human immunodeficiency virus infection
  2. Munson, Paul; Liu, Yi; Bratt, Debra; Fuller, James T; Hu, Xintao; Pavlakis, George; Felber, Barbara; Mullins, James I; Fuller, Deborah Heydenburg
  3. Human vaccines & immunotherapeutics. 2018, Apr 12; 14(7): 1820-1831.
  1. 6.   Surveillance Study of Influenza Occurrence and Immunity in a Wisconsin Cohort During the 2009 Pandemic.
  2. Lo, Chia-Yun; Strobl, Susan L; Dunham, Kim; Wang, Wei; Stewart, Lucy; Misplon, Julia A; Garcia, Mayra; Gao, Jin; Ozawa, Tatsuhiko; Price, Graeme E; Navidad, Jose; Gradus, Steve; Bhattacharyya, Sanjib; Viboud, Cecile; Eichelberger, Maryna C; Weiss, Carol D; Gorski, Jack; Epstein, Suzanne L
  3. Open forum infectious diseases. 2017, Feb 12; 4(2): ofx023.
  1. 7.   Conformational ensembles, signal transduction and residue hot spots: Application to drug discovery
  2. Ozbabacan, S. E. A.; Gursoy, A.; Keskin, O.; Nussinov, R.
  3. Current Opinion in Drug Discovery & Development. 2010, Sep; 13(5): 527-537.
  1. 8.   Comparing interfacial dynamics in protein-protein complexes: an elastic network approach
  2. Zen, A.; Micheletti, C.; Keskin, O.; Nussinov, R.
  3. Bmc Structural Biology. 2010, Aug; 10: 13.
  1. 9.   Towards drugs targeting multiple proteins in a systems biology approach
  2. Keskin, O.; Gursoy, A.; Ma, B.; Nussinov, R.
  3. Current Topics in Medicinal Chemistry. 2007 7(10): 943-951.
  1. 10.   Association of putative concave protein-binding sites with the fluctuation behavior of residues
  2. Ertekin, A.; Nussinov, R.; Haliloglu, T.
  3. Protein Science. 2006, Oct; 15(10): 2265-2277.
  1. 11.   Residue centrality, functionally important residues, and active site shape: Analysis of enzyme and non-enzyme families
  2. del Sol, A.; Fujihashi, H.; Amoros, D.; Nussinov, R.
  3. Protein Science. 2006, Sep; 15(9): 2120-2128.
  1. 12.   Residues crucial for maintaining short paths in network communication mediate signaling in proteins
  2. del Sol, A.; Fujihashi, H.; Amoros, D.; Nussinov, R.
  3. Molecular Systems Biology. 2006
  1. 13.   Protein-protein interactions: organization, cooperativity and mapping in a bottom-up Systems Biology approach
  2. Keskin, O.; Ma, B. Y.; Rogale, K.; Gunasekaran, K.; Nussinov, R.
  3. Physical Biology. 2005, JUN; 2(2): S24-S35.
  1. 14.   Effects of mutations in the G tract of the human immunodeficiency virus type 1 polypurine tract on virus replication and RNase H cleavage
  2. Julias, J. G.; McWilliams, M. J.; Sarafianos, S. G.; Alvord, W. G.; Arnold, E.; Hughes, S. H.
  3. Journal of Virology. 2004, DEC; 78(23): 13315-13324.
  1. 15.   Functional characterization of the candidate tumor suppressor gene NPRL2/G21 located in 3p21.3C
  2. Li, F.; Wang, F.; Haraldson, K.; Protopopov, A.; Duh, F. M.; Geil, L.; Kuzmin, I.; Minna, J. D.; Stanbridge, E.; Braga, E.; Kashuba, V. I.; Klein, G.; Lerman, M. I.; Zabarovsky, E. R.
  3. Cancer Research. 2004, SEP 15; 64(18): 6438-6443.
  1. 16.   The origin of human chromosome 1 and its homologs in placental mammals
  2. Murphy, W. J.; Fronicke, L.; O'Brien, S. J.; Stanyon, R.
  3. Genome Research. 2003 13(8): 1880-1888.
  1. 17.   Structure and patterns of sequence variation in the mitochondrial DNA control region of the great cats
  2. Jae-Heup, K.; Eizirik, E.; O'Brien, S. J.; Johnson, W. E.
  3. Mitochondrion. 2001 1(3): 279-292.
  1. 18.   Cloning and characterization of Hunk, a novel mammalian SNF1-related protein kinase
  2. Gardner, H. P.; Wertheim, G. B. W.; Ha, S. I.; Copeland, N. G.; Gilbert, D. J.; Jenkins, N. A.; Marquis, S. T.; Chodosh, L. A.
  3. Genomics. 2000 63(1): 46-59.
  1. 19.   Cloning, characterization, and chromosomal localization of Pnck, a Ca2+/calmodulin-dependent protein kinase
  2. Gardner, H. P.; Rajan, J. V.; Ha, S. I.; Copeland, N. G.; Gilbert, D. J.; Jenkins, N. A.; Marquis, S. T.; Chodosh, L. A.
  3. Genomics. 2000 63(2): 279-288.
  1. 20.   The strict conservation of the HIV-1 retroviral nucleocapsid protein "CCHC" ZN2+-finger is due to its function in early infection events and not RNA packaging
  2. Gorelick, R. J.; Gagliardi, T. D.; Bosche, W. J.; Henderson, L. E.; Arthur, L. O.
  3. HIV Pathogenesis and Treatment Conference. 1998, 66 (abstract no. 3029).
  1. 21.   Evolution of the Avian Sex Chromosomes From an Ancestral Pair of Autosomes
  2. Fridolfsson, A. K.; Cheng, H.; Copeland, N. G.; Jenkins, N. A.; Liu, H. C.; Raudsepp, T.; Woodage, T.; Chowdhary, B.; Halverson, J.; Ellegren, H.
  3. Proceedings of the National Academy of Sciences of the United States of America. 1998 95(14): 8147-8152.
  1. 22.   Cloning and characterization of Krct, a member of a novel subfamily of serine/threonine kinases
  2. Stairs, D. B.; Gardner, H. P.; Ha, S. I.; Copeland, N. G.; Gilbert, D. J.; Jenkins, N. A.; Chodosh, L. A.
  3. Human Molecular Genetics. 1998 7(13): 2157-2166.
  1. 23.   Autophosphorylation of Activation Loop Tyrosines Regulates Signaling By the Trk Nerve Growth Factor Receptor
  2. Cunningham, M. E.; Stephens, R. M.; Kaplan, D. R.; Greene, L. A.
  3. Journal of Biological Chemistry. 1997 272(16): 10957-10967.
  1. 24.   Frequency of Hla Allele-Specific Peptide Motifs in Hiv-1 Proteins Correlates With the Alleles Association With Relative Rates of Disease Progression After Hiv-1 Infection
  2. Nelson, G. W.; Kaslow, R.; Mann, D. L.
  3. Proceedings of the National Academy of Sciences of the United States of America. 1997 94(18): 9802-9807.
  1. 25.   Identification of Cooperative Folding Units in a Set of Native Proteins
  2. Wallqvist, A.; Smythers, G. W.; Covell, D. G.
  3. Protein Science. 1997 6(8): 1627-1642.
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