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  1. 1.   Blocking C-terminal processing of KRAS4b via a direct covalent attack on the CaaX-box cysteine
  2. Maciag,Anna; Yang, Yue; Sharma,Alok; Turner,David; Dehart,Caroline; Abdelkarim, Hazem; Fan,Lixin; Smith,Brian; Kumari,Vandana; Dyba,Marcin; Rigby,Megan; Castillo Badillo,Jean; Adams, Lauren; Fornelli, Luca; Fox, Stephen; Brafman, Alla; Turbyville,Thomas; Gillette,William; Messing,Simon; Agamasu, Constance; Wolfe, Andrew L; Gysin, Stephan; Chan, Albert H; Simanshu,Dhirendra; Esposito,Dominic; Chertov,Oleg; Stephen,Andrew; Arkin, Michelle; Renslo, Adam; Kelleher, Neil L; Gaponenko, Vadim; Lightstone, Felice C; Nissley,Dwight; McCormick, Frank
  3. Proceedings of the National Academy of Sciences of the United States of America. 2025, May 13; 122(19): e2410766122.
  1. 2.   Soluble CD13 is a potential mediator of neutrophil-induced thrombogenic inflammation in SARS-CoV-2 infection
  2. Tsou, Pei-Suen; Ali, Ramadan A; Lu, Chenyang; Sule, Gautam; Carmona-Rivera, Carmelo; Lucotti, Serena; Ikari, Yuzo; Wu, Qi; Campbell, Phillip; Gurrea-Rubio, Mikel; Maeda, Kohei; Fox, Sharon E; Brodie, William D; Mattichak, Megan N; Foster, Caroline; Tambralli, Ajay; Yalavarthi, Srilakshmi; Amin, M Asif; Kmetova, Katarina; Mazetto Fonseca, Bruna; Chong, Emily; Zuo, Yu; Maile, Michael; Imberti, Luisa; Caruso, Arnaldo; Caccuri, Francesca; Quaresima, Virginia; Sottini, Alessandra; Kuhns,Douglas; Fink,Danielle; Castagnoli, Riccardo; Delmonte, Ottavia; Kenney, Heather; Zhang, Yu; Magliocco, Mary; Su, Helen C; Notarangelo, Luigi D; Zemans, Rachel L; Mao-Draayer, Yang; Matei, Irina; Salvatore, Mirella; Lyden, David C; Kanthi, Yogendra; Kaplan, Mariana J; Knight, Jason S; Fox, David A
  3. JCI Insight. 2025, Apr 01;
  1. 3.   Distinct allosteric networks in CDK4 and CDK6 in the cell cycle and in drug resistance
  2. Zhang,Wengang; Bradburn, Devin; Heidebrink, Gretchen; Liu, Yonglan; Jang,Hyunbum; Nussinov,Ruth; Kõivomägi, Mardo
  3. Journal of Molecular Biology. 2025, Mar 31; 169121.
  1. 4.   Prior SARS-Cov-2 infection affects adaptive immune responses to Omicron BA.4/BA.5 mRNA booster
  2. Wachter, Brianna T; Xu, Qin; Shi, Lihong; Burbelo, Peter D; Myint-Hpu, Kathy; Schwartzberg, Pamela L; Rehman,Tauseef; Dewar,Robin; Boswell, Kristin L; Koup, Richard A; Oguz, Cihan; Imberti, Luisa; Bellusci, Lorenza; Pourhashemi, Sara; Khurana, Surender; Manthiram, Kalpana; Notarangelo, Luigi D; Delmonte, Ottavia M
  3. The journal of Allergy and Clinical Immunology. . 2025, Mar 03;
  1. 5.   ShiftScan: A tool for rapid analysis of high-throughput differential scanning fluorimetry data and compound prioritization
  2. Waterworth, Samantha C; Shenoy, Shilpa R; Sharma, Nirmala D; Wolcott,Chris; Donohue,Duncan; O'Keefe,Barry; Beutler,John
  3. Protein Science : a publication of the Protein Society. 2025, Mar; 34(3): e70055.
  1. 6.   Isolation and structure elucidation of Dm-CVNH, a new cyanovirin-N homolog with activity against SARS-CoV-2 and HIV-1
  2. Orfanoudaki,Maria; Krumpe,Lauren; Shenoy, Shilpa R; Wilson,Jennifer; Guszczynski, Tad; Henrich,Curtis; Temme,Joel; Gildersleeve,Jeffrey; Molina-Molina, Elisa; Erkizia, Itziar; Blanco, Julià; Izquierdo-Useros, Nuria; Montiero, Fabio; Tanuri, Amilcar; Rech, Elibio; O'Keefe,Barry
  3. The Journal of Biological Chemistry. 2025, Feb 14; 108319.
  1. 7.   Examining the bias-efficiency tradeoff from incorporation of nonconcurrent controls in platform trials: A simulation study example from the adaptive COVID-19 treatment trial
  2. Bonnett,Tyler; Potter, Gail E; Dodd, Lori E
  3. Clinical Trials (London, England). 2025, Feb 08; 17407745251313928.
  1. 8.   Viral Burden and Illness Severity During Acute SARS-CoV-2 Infection Predict Persistent Long COVID Symptoms
  2. Brandstetter Figueroa, Elisabeth; Frosch, Anne E P; Burrack, Kristina S; Dileepan, Gayathri; Goldsmith, Rachael; Harris, Morgan; Ikeogu, Nwando; Jibrell, Hodan; Thayalan, Sangeitha; Dewar,Robin; Shenoy, Chetan; Sereti, Irini; Baker, Jason V
  3. Open Forum Infectious Diseases. 2025, Feb; 12(2): ofaf048.
  1. 9.   Proteomic and serologic assessments of responses to mRNA-1273 and BNT162b2 vaccines in human recipient sera
  2. Hickey,Thomas; Mudunuri,Uma; Hempel,Heidi; Kemp,Troy; Roche,Nancy; Talsania, Keyur; Sellers, Brian A; Cherry, James M; Pinto,Ligia
  3. Frontiers in Immunology. 2025, Jan 27; 15: 1502458.
  1. 10.   Coronavirus Disease 2019 (COVID-19) Real World Data Infrastructure: A Big-Data Resource for Study of the Impact of COVID-19 in Patient Populations With Immunocompromising Conditions
  2. Crawford, James M; Penberthy, Lynne; Pinto,Ligia; Althoff, Keri N; Assimon, Magdalene M; Cohen, Oren; Gillim, Laura; Hammonds, Tracy L; Kapur, Shilpa; Kaufman, Harvey W; Kwasny, David; Liew, Jean W; Meyer, William A; Reynolds, Shannon L; Schleicher, Cheryl B; Subbiah, Suki; Theruviparampil, Catherine; Wallace, Zachary S; Warner, Jeremy L; Yoon, Suhyeon; Ziemba, Yonah C
  3. Open Forum Infectious Diseases. 2025, Jan; 12(1): ofaf021.
  1. 11.   Use of mobile phones to collect data on COVID-19: phone access and participation rates, in Rakai, Uganda
  2. Ssekubugu, Robert; Ndyanabo, Anthony; Makumbi, Fredrick; Ekström, Anna Mia; Beres, Laura; Nalwoga Kigozi, Grace; Nakawooya, Hadijja; Ssekasanvu, Joseph; Wawer, Maria J; Nalugoda, Fred; Sewankambo, Nelson; Ssempijja,Victor; Nantume, Betty; Serwadda, David; Kigozi, Godfrey; Gray, Ronald H; Chang, Larry W; Grabowski, M Kate; Nordenstedt, Helena; Kagaayi, Joseph
  3. Global Health Action. 2024, Dec 31; 17(1): 2419160.
  1. 12.   Affinity Tag-Free Purification of SARS-CoV-2 N Protein and Its Crystal Structure in Complex with ssDNA
  2. Maiti,Atanu; Matsuo,Hiroshi
  3. Biomolecules. 2024, Nov 30; 14(12):
  1. 13.   Adjuvants to the S1-subunit of the SARS-CoV-2 spike protein vaccine improve antibody and T cell responses and surrogate neutralization in mice
  2. Becker, William; Rebbani, Khadija; Duan, Zhijian; Valkov,Eugene; Bryant, Shawn; Ho, Mitchell; Berzofsky, Jay A; Olkhanud, Purevdorj B
  3. Scientific Reports. 2024, Nov 28; 14(1): 29609.
  1. 14.   Analytical measuring interval, linearity, and precision of serology assays for detection of SARS-CoV-2 antibodies according to CLSI guidelines
  2. Haynesworth,Katrina; Kemp,Troy; Loftus,Sarah; Metz,Jordan; Castro, Nicholas C; Bullock, Jimmie; Fetterer, David; Pinto,Ligia
  3. mSphere. 2024, Oct 31; e0039324.
  1. 15.   Humoral Immunity Profiling to Pandemic and Bat-Derived Coronavirus Variants: A Geographical Comparison
  2. Fathi, Parinaz; Alfonso, Andrea Lucia; Yek, Christina; Putman, Zoe; Drew,Matt; Esposito,Dom; Zaidi, Irfan; Chea, Sophana; Ly, Sokna; Sath, Rathanak; Lon, Chanthap; Chea, Huch; Leang, Rithea; Huy, Rekol; Ly, Sovann; Seng, Heng; Tan, Chee Wah; Zhu, Feng; Wang, Lin-Fa; Oliveira, Fabiano; Sadtler, Kaitlyn; Manning, Jessica
  3. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). 2024, Oct 29; e2403503.
  1. 16.   Practical application of good participatory practices for trials of emerging pathogens: Developing materials for use in ACTIV-3, -3b, and ACTIV-associated COVID-19 trials
  2. Guerra-de-Blas, Paola Del Carmen; Marines-Price, Rubria; Milman, Olga; Deal,Danae; Marchand,Jon; Linton,Jessica; Meger, Sue; Rule, John; Holland, Thomas L; Kitonsa, Jonathan; Delph, Yvette
  3. Journal of Clinical and Translational Science. 2024, Oct 15; 8(1): e157.
  1. 17.   Multi-objective latent space optimization of generative molecular design models
  2. Abeer, A N M Nafiz; Urban, Nathan M; Weil,Michael; Alexander, Francis J; Yoon, Byung-Jun
  3. Patterns (New York, N.Y.). 2024, Oct 11; 5(10): 101042.
  1. 18.   Neutralizing Antibody Immune Correlates for a Recombinant Protein Vaccine in the COVAIL Trial
  2. Fong, Youyi; Dang, Lauren; Zhang, Bo; Fintzi, Jonathan; Chen, Shiyu; Wang, Jing; Rouphael, Nadine G; Branche, Angela R; Diemert, David J; Falsey, Ann R; Losada, Cecilia; Baden, Lindsey R; Frey, Sharon E; Whitaker, Jennifer A; Little, Susan J; Kamidani, Satoshi; Walter, Emmanuel B; Novak, Richard M; Rupp, Richard; Jackson, Lisa A; Yu, Chenchen; Magaret, Craig A; Molitor, Cindy; Borate, Bhavesh; Babu, Tara M; Kottkamp, Angelica C; Luetkemeyer, Anne F; Immergluck, Lilly C; Presti, Rachel M; Bäcker, Martín; Winokur, Patricia L; Mahgoub, Siham M; Goepfert, Paul A; Fusco, Dahlene N; Atmar, Robert L; Posavad, Christine M; Mu, Jinjian; Makowski, Mat; Makhene, Mamodikoe K; Nayak, Seema U; Roberts, Paul C; Follmann, Dean; Gilbert, Peter B
  3. Clinical Infectious Diseases : an official publication of the Infectious Diseases Society of America. 2024, Sep 26;
  1. 19.   SARS-CoV-2 RNA and nucleocapsid antigen are blood biomarkers associated with severe disease outcomes that improve in response to remdesivir
  2. Singh, Kanal; Rubenstein,Kevin; Callier,Viviane; Shaw-Saliba, Katy; Rupert,Adam; Dewar,Robin; Laverdure,Sylvain; Highbarger,Helene; Lallemand,Perrine; Huang, Meei-Li; Jerome, Keith R; Sampoleo, Reigran; Mills, Margaret G; Greninger, Alexander L; Juneja, Kavita; Porter, Danielle; Benson, Constance A; Dempsey, Walla; El Sahly, Hana M; Focht, Chris; Jilg, Nikolaus; Paules, Catharine I; Rapaka, Rekha R; Uyeki, Timothy M; Lane, H Clifford; Beigel, John; Dodd, Lori E
  3. The Journal of Infectious Diseases. 2024, Sep 23; 230(3): 624-634.
  1. 20.   Impact of baseline SARS-CoV-2 load in plasma and upper airways on the incidence of acute extrapulmonary complications of COVID-19: a multicentric, prospective, cohort study
  2. Jensen, Tomas O; Harper, Katrina; Gupta, Shaili; Liu, Sean T; Dharan, Nila J; Baker, Jason V; Pett, Sarah L; Shaw-Saliba, Kathryn; Esmail, Aliasgar; Ho, Minh Q; Almasri, Eyad; Dewar,Robin; Lundgren, Jens; Vock, David M
  3. Clinical Infectious Diseases : an official publication of the Infectious Diseases Society of America. 2024, Sep 13;
  1. 21.   Evaluation of the feasibility and efficacy of point-of-care antibody tests for biomarker guided management of COVID-19
  2. Reilly, Cavan; Mylonakis, Eleftherios; Dewar,Robin; Young, Barnaby; Nordwall, Jacqueline; Bhagani, Sanjay; Chia, Po-Ying; Davis, Ruby; Files, Clark; Ginde, Adit A; Hatlen, Timothy; Helleberg, Marie; Hayanga, Awori; Jensen, Tomas O; Jain, Mamta K; Kalomenidis, Ioannis; Kim, Kami; Lallemand,Perrine; Lindegaard, Birgitte; Menon, Anupama; Ognenovska, Katherine; Poulakou, Garyfallia; Thorup Røge, Birgit; Rogers, Angela J; Shaw-Saliba, Katy; Sandkovsky, Uriel; Trautner, Barbara W; Vasudeva, Shikha S; Vekstein, Andrew; Viens, Kimberley; Wyncoll, James; DuChateau, Brian; Zhang, Zhenxing; Wu, Shujiang; Babiker, Abdel G; Davey, Victoria; Gelijns, Annetine; Higgs, Elizabeth; Kan, Virginia; Lundgren, Jens; Matthews, Gail V; Lane, H Cliff
  3. The Journal of Infectious Diseases. 2024, Sep 12;
  1. 22.   Structural and virologic mechanism of the emergence of resistance to Mpro inhibitors in SARS-CoV-2
  2. Hattori, Shin-Ichiro; Bulut, Haydar; Hayashi, Hironori; Kishimoto, Naoki; Takamune, Nobutoki; Hasegawa, Kazuya; Furusawa, Yuri; Yamayoshi, Seiya; Murayama, Kazutaka; Tamamura, Hirokazu; Li,Mi; Wlodawer, Alexander; Kawaoka, Yoshihiro; Misumi, Shogo; Mitsuya, Hiroaki
  3. Proceedings of the National Academy of Sciences of the United States of America. 2024, Sep 10; 121(37): e2404175121.
  1. 23.   MoMo30 Binds to SARS-CoV-2 Spike Variants and Blocks Infection by SARS-CoV-2 Pseudovirus
  2. DeBarros, Kenya; Khan, Mahfuz; Coleman, Morgan; Bond, Vincent C; Floyd, Virginia; Gbodossou, Erick; Diop, Amad; Krumpe,Lauren; O'Keefe,Barry; Powell, Michael D
  3. Viruses. 2024, Sep 07; 16(9):
  1. 24.   Guanylate-binding protein 5 antagonizes viral glycoproteins independently of furin processing
  2. Veler,Hana; Lun, Cheng Man; Waheed,Abdul; Freed,Eric
  3. mBio. 2024, Aug 30; e0208624.
  1. 25.   The Impact of SIV-Induced Immunodeficiency on SARS-CoV-2 Disease, Viral Dynamics, and Antiviral Immune Response in a Nonhuman Primate Model of Coinfection
  2. Melton, Alexandra; Rowe, Lori A; Penney, Toni; Krzykwa, Clara; Goff, Kelly; Scheuermann, Sarah E; Melton, Hunter J; Williams, Kelsey; Golden, Nadia; Green, Kristyn Moore; Smith, Brandon; Russell-Lodrigue, Kasi; Dufour, Jason P; Doyle-Meyers, Lara A; Schiro, Faith; Aye, Pyone P; Lifson,Jeffrey; Beddingfield, Brandon J; Blair, Robert V; Bohm, Rudolf P; Kolls, Jay K; Rappaport, Jay; Hoxie, James A; Maness, Nicholas J
  3. Viruses. 2024, Jul 21; 16(7):
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