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  1. 1.   Co-incubation of Short Amphiphilic Peptides with Dicer Substrate RNAs Results in ß-Sheet Fibrils for Enhanced Gene Silencing in Cancer Cells
  2. Gupta, Kshitij; Parlea, Lorena; Puri,Anu; Smith, Katelyn; Puri,Anu; Bergman, Joseph T; Kim, Taejin; Shapiro,Bruce
  3. RNA Nanomed. 2024, Dec; 1(1): 61-78.
  1. 2.   Amyloid Oligomers: A Joint Experimental/Computational Perspective on Alzheimer's Disease, Parkinson's Disease, Type II Diabetes, and Amyotrophic Lateral Sclerosis
  2. Nguyen, Phuong H.; Ramamoorthy, Ayyalusamy; Sahoo, Bikash R.; Zheng, Jie; Faller, Peter; Straub, John E.; Dominguez, Laura; Shea, Joan-Emma; Dokholyan, Nikolay; De Simone, Alfonso; Ma, Buyong; Nussinov,Ruth; Najafi, Saeed; Ngo, Son Tung; Loquet, Antoine; Chiricotto, Mara; Ganguly, Pritam; McCarty, James; Li, Mai Suan; Hall, Carol; Wang, Yiming; Miller, Yifat; Melchionna, Simone; Habenstein, Birgit; Timr, Stepan; Chen, Jiaxing; Hnath, Brianna; Strodel, Birgit; Kayed, Rakez; Lesne, Sylvain; Wei, Guanghong; Sterpone, Fabio; Doig, Andrew J.; Derreumaux, Philippe
  3. Chemical Reviews. 2021, Feb 24; 121(4): 2545-2647.
  1. 3.   Inhibition of Nonfunctional Ras
  2. Nussinov,Ruth; Jang, Hyunbum; Gursoy, Attila; Keskin, Ozlem; Gaponenko, Vadim
  3. Cell Chemical Biology. 2021, Feb 18; 28(2): 121-133.
  1. 4.   Autoinhibition can identify rare driver mutations and advise pharmacology
  2. Nussinov,Ruth; Tsai,Chung-Jung; Jang,Hyunbum
  3. FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 2020, Jan; 34(1): 16-29.
  1. 5.   Protein ensembles link genotype to phenotype
  2. Nussinov,Ruth; Tsai,Chung-Jung; Jang,Hyunbum
  3. PLoS computational biology. 2019, Jun; 15(6):
  1. 6.   Computational Structural Biology: Successes, Future Directions, and Challenges
  2. Nussinov, Ruth; Tsai, Chung-Jung; Shehu, Amarda; Jang, Hyunbum
  3. Molecules (Basel, Switzerland). 2019, Feb 1; 24(3):
  1. 7.   Structure and energetic basis of overrepresented ? light chain in systemic light chain amyloidosis patients
  2. Zhao, Jun; Zhang, Baohong; Zhu, Jianwei; Nussinov, Ruth; Ma, Buyong
  3. Biochimica et Biophysica Acta. 2018, Jun; 1864(6 Pt B): 2294-2303.
  1. 8.   Conformational Dynamics and Allostery in E2:E3 Interactions Drive Ubiquitination: gp78 and Ube2g2
  2. Chakrabarti, Kalyan S; Li, Jess; Das, Ranabir; Byrd, Robert
  3. Structure (London, England : 1993). 2017, May 2; 25(5): 794-805.
  1. 9.   Disordered Proteins and Network Disorder in Network Descriptions of Protein Structure, Dynamics and Function: Hypotheses and a Comprehensive Review
  2. Csermely, P.; Sandhu, K. S.; Hazai, E.; Hoksza, Z.; Kiss, H. J. M.; Miozzo, F.; Veres, D. V.; Piazza, F.; Nussinov, R.
  3. Current Protein & Peptide Science. 2012, Feb; 13(1): 19-33.
  1. 10.   Gene-specific transcription activation via long-range allosteric shape-shifting
  2. Tsai, C. J.; Nussinov, R.
  3. Biochemical Journal. 2011, Oct; 439: 15-25.
  1. 11.   Dynamic Allostery: Linkers Are Not Merely Flexible
  2. Ma, B. Y.; Tsai, C. J.; Haliloglu, T.; Nussinov, R.
  3. Structure. 2011, Jul; 19(7): 907-917.
  1. 12.   Allostery and population shift in drug discovery
  2. Kar, G.; Keskin, O.; Gursoy, A.; Nussinov, R.
  3. Current Opinion in Pharmacology. 2010, Dec; 10(6): 715-722.
  1. 13.   Induced fit, conformational selection and independent dynamic segments: an extended view of binding events
  2. Csermely, P.; Palotai, R.; Nussinov, R.
  3. Trends in Biochemical Sciences. 2010, Oct; 35(10): 539-546.
  1. 14.   Enzyme dynamics point to stepwise conformational selection in catalysis
  2. Ma, B. Y.; Nussinov, R.
  3. Current Opinion in Chemical Biology. 2010, Oct; 14(5): 652-659.
  1. 15.   Zinc ions promote Alzheimer A beta aggregation via population shift of polymorphic states
  2. Miller, Y.; Ma, B. Y.; Nussinov, R.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2010, May 25; 107(21): 9490-9495.
  1. 16.   Mechanisms of transcription factor selectivity
  2. Pan, Y. P.; Tsai, C. J.; Ma, B. Y.; Nussinov, R.
  3. Trends in Genetics. 2010, Feb; 26(2): 75-83.
  1. 17.   The role of dynamic conformational ensembles in biomolecular recognition
  2. Boehr, D. D.; Nussinov, R.; Wright, P. E.
  3. Nature Chemical Biology. 2009 5(11): 789-796.
  1. 18.   How do transcription factors select specific binding sites in the genome?
  2. Pan, Y. P.; Tsai, C. J.; Ma, B. Y.; Nussinov, R.
  3. Nature Structural & Molecular Biology. 2009 16(11): 1118-1120.
  1. 19.   Constructing templates for protein structure prediction by simulation of protein folding pathways
  2. Kifer, I.; Nussinov, R.; Wolfson, H. J.
  3. Proteins-Structure Function and Bioinformatics. 2008 73(2): 380-394.
  1. 20.   Principles of nanostructure design with protein building blocks
  2. Tsai, C. J.; Zheng, J.; Zanuy, D.; Haspel, N.; Wolfson, H.; Aleman, C.; Nussinov, R.
  3. Proteins-Structure Function and Bioinformatics. 2007, Jul; 68(1): 1-12.
  1. 21.   Sequence and structure analysis of parallel beta helices: Implication for constructing amyloid structural models
  2. Tsai, H. H.; Gunasekaran, K.; Nussinov, R.
  3. Structure. 2006, Jun; 14(6): 1059-1072.
  1. 22.   Energy landscape of amyloidogenic peptide oligomerization by parallel-tempering molecular dynamics simulation: Significant role of Asn ladder
  2. Tsai, H. H.; Reches, M.; Tsai, C. J.; Gunasekaran, K.; Gazit, E.; Nussinov, R.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2005, JUN 7; 102(23): 8174-8179.
  1. 23.   Is allostery an intrinsic property of all dynamic proteins?
  2. Gunasekaran, K.; Ma, B. Y.; Nussinov, R.
  3. Proteins-Structure Function and Bioinformatics. 2004, NOV 15; 57(3): 433-443.
  1. 24.   The stability and free energy landscape of an amyloid-forming peptide DFNKF from the human calcitonin in explicit water
  2. Tsai, H. H. G.; Tsai, C. J.; Ma, B.; Gunasekaran, K.; Zanuy, D.; Nussinov, R.
  3. Biophysical Journal. 2004 86(1, Part 2 Suppl. S): 412A-412A.
  1. 25.   Point mutations and sequence variability in proteins. Redistributions of preexisting populations
  2. Sinha, N.; Nussinov, R.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2001 98(6): 3139-3144.
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