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  1. 1.   Deletion of a single CTCF motif at the boundary of a chromatin domain with three FGF genes disrupts gene expression and embryonic development
  2. Chakraborty, Shreeta; Wenzlitschke, Nina; Anderson,Matthew; Eraso, Ariel; Baudic, Manon; Thompson, Joyce J; Evans, Alicia A; Shatford-Adams, Lilly M; Chari,Raj; Awasthi,Roackie; Dale, Ryan K; Lewandoski,Mark; Petros, Timothy J; Rocha, Pedro P
  3. Developmental Cell. 2025, Feb 24;
  1. 2.   Epigenetic associations with kidney disease in individuals of African ancestry with APOL1 high-risk genotypes and Human Immunodeficiency Virus
  2. Hung, Rachel K Y; Costeira, Ricardo; Chen, Junyu; Schlosser, Pascal; Grundner-Culemann, Franziska; Booth, John W; Sharpe, Claire C; Bramham, Kate; Sun, Yan V; Marconi, Vincent C; Teumer, Alexander; Winkler,Cheryl; Post, Frank A; Bell, Jordana T
  3. Nephrology, Dialysis, Transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association. 2024, Oct 24;
  1. 3.   In utero exposure to diethylstilbestrol and blood DNA methylation in adult women: Results from a meta-analysis of two cohort studies
  2. Bodelon, Clara; Gierach, Gretchen L; Hatch, Elizabeth E; Riseberg, Emily; Hutchinson,Amy; Yeager,Meredith; Sandler, Dale P; Taylor, Jack A; Hoover, Robert N; Xu, Zongli; Titus, Linda; Palmer, Julie R; Troisi, Rebecca
  3. Environmental Research. 2023, Aug 15; 231(Pt. 1): 115990.
  1. 4.   CpG Site-Specific Methylation-Modulated Divergent Expression of PRSS3 Transcript Variants Facilitates Nongenetic Intratumor Heterogeneity in Human Hepatocellular Carcinoma
  2. Lin, Shuye; Xu, Hanli; Pang, Mengdi; Zhou, Xiaomeng; Pan, Yuanming; Zhang, Lishu; Guan, Xin; Wang, Xiaoyue; Lin, Bonan; Tian, Rongmeng; Chen,Keqiang; Zhang, Xiaochen; Yang, Zijiang; Ji, Fengmin; Huang, Yingying; Wei, Wu; Gong,Wang; Ren, Jianke; Wang,Jiming; Guo, Mingzhou; Huang, Jiaqiang
  3. Frontiers in Oncology. 2022, Apr 11; 12: 831268.
  1. 5.   Spatial and Functional Organization of Human Papillomavirus Replication Foci in the Productive Stage of Infection
  2. Khurana, Simran; Markowitz,Tovah; Kabat, Juraj; McBride, Alison A
  3. mBio. 2021, Dec 21; 12(6): e0268421.
  1. 6.   Ancient Adversary - HERV-K (HML-2) in Cancer
  2. Dervan, Eoin; Bhattacharyya,Dana; McAuliffe, Jake D.; Khan, Faizan H.; Glynn, Sharon A.
  3. Frontiers in oncology. 2021, May 13; 11
  1. 7.   Intravenous 5-fluoro-2'-deoxycytidine administered with tetrahydrouridine increases the proportion of p16-expressing circulating tumor cells in patients with advanced solid tumors
  2. Coyne, Geraldine O 'Sullivan; Wang,Lihua; Zlott, Jennifer; Juwara,Lamin; Covey, Joseph M; Beumer, Jan H; Cristea, Mihaela C; Newman, Edward M; Koehler, Stephen; Nieva, Jorge J; Garcia, Agustin A; Gandara, David R; Miller,Brandon; Khin,Sonny; Miller, Sarah B; Steinberg, Seth M; Rubinstein, Larry; Parchment,Ralph; Kinders,Robert; Piekarz, Richard L; Kummar, Shivaani; Chen, Alice P; Doroshow, James H
  3. Cancer chemotherapy and pharmacology. 2020, Apr 20;
  1. 8.   A Systems Chemoproteomic Analysis of Acyl-CoA/Protein Interaction Networks
  2. Levy, Michaella J; Montgomery, David C; Sardiu, Mihaela E; Montano,Jose; Bergholtz, Sarah E; Nance,Kellie; Thorpe,Abbey; Fox,Stephen; Lin, Qishan; Andresson,Thorkell; Florens, Laurence; Washburn, Michael P; Meier,Jordan
  3. Cell chemical biology. 2020, MAR 19; 27(3): 322-+.
  1. 9.   Serum dioxin and DNA methylation in the sperm of operation ranch hand veterans exposed to Agent Orange
  2. Kelsey, Karl T; Rytel, Matthew; Dere, Edward; Butler, Rondi; Eliot, Melissa; Huse,Susan; Houseman, E Andres; Koestler, Devin C; Boekelheide, Kim
  3. Environmental health : a global access science source. 2019, Oct 29; 18(1): 91.
  1. 10.   Photoinducible Oncometabolite Detection
  2. Kulkarni, Rhushikesh A.; Briney, Chloe; Crooks, Daniel R.; Bergholtz, Sarah; Mushti, Chandrasekhar; Lockett, Stephen; Lane, Andrew N.; Fan, Teresa W. -M.; Swenson, Rolf E.; Linehan, W. Marston; Meier, Jordan
  3. Chembiochem : a European journal of chemical biology. 2019, FEB 1; 20(3): 360-365.
  1. 11.   Epigenetic Age in Male Combat-Exposed War Veterans: Associations with Posttraumatic Stress Disorder Status
  2. Verhoeven, Josine E; Yang, Ruoting; Wolkowitz, Owen M; Bersani, Francesco S; Lindqvist, Daniel; Mellon, Synthia H; Yehuda, Rachel; Flory, Janine D; Lin, Jue; Abu-Amara, Duna; Makotkine, Iouri; Marmar, Charles; Jett, Marti; Hammamieh, Rasha
  3. Molecular neuropsychiatry. 2018, Oct; 4(2): 90-99.
  1. 12.   Fasting-induced JMJD3 histone demethylase epigenetically activates mitochondrial fatty acid ß-oxidation
  2. Seok, Sunmi; Kim, Young-Chae; Byun, Sangwon; Choi, Sunge; Xiao, Zhen; Iwamori, Naoki; Zhang, Yang; Wang, Chaochen; Ma, Jian; Ge, Kai; Kemper, Byron; Kemper, Jongsook Kim
  3. The Journal of Clinical Investigation. 2018, Jul 2; 128(7): 3144-3159.
  1. 13.   Defining Metabolic and Nonmetabolic Regulation of Histone Acetylation by NSAID Chemotypes
  2. Shrimp, Jonathan; Garlick, Julie M.; Tezil, Tugsan; Sorum, Alexander W.; Worth, Andrew J.; Blair, Ian A.; Verdin, Eric; Snyder, Nathaniel W.; Meier, Jordan
  3. MOLECULAR PHARMACEUTICS. 2018, Mar; 15(3, Special Issue): 729-736.
  1. 14.   Tethering of Lsh at the Oct4 locus promotes gene repression associated with epigenetic changes.
  2. Ren, Jianke; Hathaway, Nathaniel A; Crabtree, Gerald R; Muegge, Kathrin
  3. Epigenetics. 2018, Feb 6; 13(2): 173-181.
  1. 15.   Conformational dynamics of the TTD-PHD histone reader module of the UHRF1 epigenetic regulator reveals multiple histone-binding states, allosteric regulation, and druggability
  2. Houliston, R Scott; Lemak, Alexander; Iqbal, Aman; Ivanochko, Danton; Duan, Shili; Kaustov, Lilia; Ong, Michelle S; Fan, Lixin; Senisterra, Guillermo; Brown, Peter J; Wang, Yun-Xing; Arrowsmith, Cheryl H
  3. Journal of Biological Chemistry. 2017, Dec 22; 292(51): 20947-20959.
  1. 16.   Multidimensional Network-Clusters to Elucidate PTSD Biology: An Epigenomic Study of OEF/OIF Cohort
  2. Chakraborty, Nabarun; Hammamieh, Rasha; Yang, Ruoting; Gautam, Aarti; Muhie, Seid; Abu Amara, Duna; Marmar, Charles; Jett, Marti
  3. Biological Psychiatry. 2017, May 15; 81(10, Supplement S): S287-S287, Abstract 708.
  1. 17.   Integrating Epigenomics into the Understanding of Biomedical Insight.
  2. Han, Yixing; He, Ximiao
  3. Bioinformatics and biology insights. 2016, Dec 4; 10: 267-289.
  1. 18.   PRC2 directly methylates GATA4 and represses its transcriptional activity
  2. He, A. B.; Shen, X. H.; Ma, Q.; Cao, J. J.; von Gise, A.; Zhou, P. Z.; Wang, G.; Marquez, V. E.; Orkin, S. H.; Pu, W. T.
  3. Genes & Development. 2012, Jan; 26(1): 37-42.
  1. 19.   Lsh, chromatin remodeling family member, modulates genome-wide cytosine methylation patterns at nonrepeat sequences
  2. Tao, Y. G.; Xi, S. C.; Shan, J. G.; Maunakea, A.; Che, A.; Briones, V.; Lee, E. Y.; Geiman, T.; Huang, J. Q.; Stephens, R.; Leighty, R. M.; Zhao, K. J.; Muegge, K.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2011, Apr; 108(14): 5626-5631.
  1. 20.   Epigenetic gene regulation in stem cells and correlation to cancer
  2. Mathews, L. A.; Crea, F.; Farrar, W. L.
  3. Differentiation. 2009, Jul; 78(1): 1-17.
  1. 21.   Enhancement of antineoplastic action of 5-aza-2'-deoxycytidine by zebularine on L1210 leukemia
  2. Lemaire, M.; Momparler, L. F.; Bernstein, M. L.; Marquez, V. E.; Momparler, R. L.
  3. Anti-Cancer Drugs. 2005, MAR; 16(3): 301-308.
  1. 22.   The importance of genome architecture in cancer susceptibility - Location, location, location
  2. Reilly, K. M.
  3. Cell Cycle. 2004, NOV; 3(11): 1378-1382.
  1. 23.   Inhibition of HhaI DNA (cytosine-C5) methyltransferase by oligodeoxyribonucleotides containing 5-aza-2 '-deoxycytidine: Examination of the intertwined roles of co-factor, target, transition state structure and enzyme conformation
  2. Brank, A. S.; Eritja, R.; Garcia, R. G.; Marquez, V. E.; Christman, J. K.
  3. Journal of Molecular Biology. 2002 323(1): 53-67.
  1. 24.   Nucleotide resolution sequencing of N4-acetylcytidine in RNA
  2. Thomas,Justin; Bryson,Keri; Meier,Jordan
  3. Methods in enzymology. 2019 621: 31-51.
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