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  1. 1.   How to recover from a bad start: adaptation of HIV-1 transcription start site mutants during serial passaging in culture
  2. Nikolaitchik,Olga; Chameettachal,Akhil; Islam,Mohammad Saiful; Keele,Brandon; Delviks-Frankenberry, Krista; Pathak,Vinay; Hu,Wei-Shau; Cheng,Zetao
  3. Journal of Virology. 2025, May 07; e0015925.
  1. 2.   Multi-generational benefits of genetic rescue
  2. Onorato, Dave P; Cunningham, Mark W; Lotz, Mark; Criffield, Marc; Shindle, David; Johnson, Annette; Clemons, Bambi C F; Shea, Colin P; Roelke-Parker,Melody; Johnson, Warren E; McClintock, Brett T; Pilgrim, Kristine L; Schwartz, Michael K; Oli, Madan K
  3. Scientific reports. 2024, Jul 30; 14(1): 17519.
  1. 3.   Genome-scale exon perturbation screens uncover exons critical for cell fitness
  2. Xiao,Meisheng; Damodaran,Arun Prasath; Kumari,Bandana; Dickson, Ethan; Xing, Kun; On, Tyler A; Parab, Nikhil; King, Helen E; Perez, Alexendar R; Guiblet,Wilfried; Duncan,Gerard; Che,Anney; Chari,Raj; Andresson,Thorkell; Vidigal, Joana A; Weatheritt, Robert J; Aregger,Michael; Gonatopoulos Pournatzis,Thomas
  3. Molecular Cell. 2024, Jul 11; 84(13): 2553-2572.
  1. 4.   HIV-1 usurps transcription start site heterogeneity of host RNA polymerase II to maximize replication fitness
  2. Nikolaitchik,Olga; Islam,Mohammad Saiful; Kitzrow,Jonathan; Duchon,Alice; Cheng,Zetao; Liu, Yang; Rawson, Jonathan M O; Shao,Wei; Nikolaitchik, Maria; Kearney,Mary; Maldarelli,Frank; Musier-Forsyth, Karin; Pathak,Vinay; Hu,Wei-Shau
  3. Proceedings of the National Academy of Sciences of the United States of America. 2023, Jun 06; 120(23): e2305103120.
  1. 5.   The roles of five conserved lentiviral RNA structures in HIV-1 replication
  2. Liu, Yang; Chen, Jianbo; Nikolaitchik, Olga; Desimmie, Belete; Busan, Steven; Pathak, Vinay; Weeks, Kevin M; Hu, Wei-Shau
  3. Virology. 2018, JAN 15; 514: 1-8.
  1. 6.   Single genome sequencing of HIV-1 gag and protease resistance mutations at virologic failure during the OK04 trial of simplified versus standard maintenance therapy
  2. McKinnon, J. E.; Delgado, R.; Pulido, F.; Shao, W.; Arribas, J. R.; Mellors, J. W.
  3. Antiviral Therapy. 2011 16(5): 725-732.
  1. 7.   Impact of Human Immunodeficiency Virus Type 1 Resistance to Protease Inhibitors on Evolution of Resistance to the Maturation Inhibitor Bevirimat (PA-457)
  2. Adamson, C. S.; Waki, K.; Ablan, S. D.; Salzwedel, K.; Freed, E. O.
  3. Journal of Virology. 2009 83(10): 4884-4894.
  1. 8.   HIV-1 protease dimer interface mutations that compensate for viral reverse transcriptase instability in infectious virions
  2. Olivares, I.; Mulky, A.; Boross, P. I.; Tozser, J.; Kappes, J. C.; Lopez-Galindez, C.; Menendez-Arias, L.
  3. Journal of Molecular Biology. 2007, Sep; 372(2): 369-381.
  1. 9.   Assortative mating in Drosophila adapted to a microsite ecological gradient
  2. Singh, S. R.; Rashkovetsky, E.; Iliadi, K.; Nevo, E.; Korol, A.
  3. Behavior Genetics. 2005, NOV; 35(6): 753-764.
  1. 10.   Retroviral recombination in vivo: Viral replication patterns and genetic structure of simian immunodeficiency virus (SIV) populations in rhesus macaques after simultaneous or sequential intravaginal inoculation with SIVmac239 Delta vpx/Delta vpr and SIVmac239 Delta nef
  2. Kim, E. Y.; Busch, M.; Abel, K.; Fritts, L.; Bustamante, P.; Stanton, J.; Lu, D.; Wu, S.; Glowczwskie, J.; Rourke, T.; Bogdan, D.; Piatak, M.; Lifson, J. D.; Desrosiers, R. C.; Wolinsky, S.; Miller, C. J.
  3. Journal of Virology. 2005, APR; 79(8): 4886-4895.
  1. 11.   In vitro characterization of a simian immunodeficiency virus-human immunodeficiency virus (HIV) chimera expressing HIV type 1 reverse transcriptase to study antiviral resistance in pigtail macaques
  2. Ambrose, Z.; Boltz, V.; Palmer, S.; Coffin, J. M.; Hughes, S. H.; KewalRamani, V. N.
  3. Journal of Virology. 2004, DEC; 78(24): 13553-13561.
  1. 12.   Reversion of CTL escape-variant immunodeficiency viruses in vivo
  2. Friedrich, T. C.; Dodds, E. J.; Yant, L. J.; Vojnov, L.; Rudersdorf, R.; Cullen, C.; Evans, D. T.; Desrosiers, R. C.; Mothe, B. R.; Sidney, J.; Sette, A.; Kunstman, K.; Wolinsky, S.; Piatak, M.; Lifson, J.; Hughes, A. L.; Wilson, N.; O'Connor, D. H.; Watkins, D. I.
  3. Nature Medicine. 2004 10(3): 275-281.
  1. 13.   High levels of fluctuating asymmetry in populations of Apodemus flavicollis from the most contaminated areas in Chornobyl
  2. Oleksyk, T. K.; Novak, J. M.; Purdue, J. R.; Gashchak, S. P.; Smith, M. H.
  3. Journal of Environmental Radioactivity. 2004 73(1): 1-20.
  1. 14.   Action of Anti-HIV drugs and resistance: Reverse transcriptase inhibitors and protease inhibitors
  2. Imamichi, T.
  3. Current Pharmaceutical Design. 2004 10(32): 4039-4053.
  1. 15.   Colinearity of reverse transcriptase inhibitor resistance mutations detected by population-based sequencing
  2. Gonzales, M. J.; Johnson, E.; Dupnik, K. M.; Imamichi, T.; Shafer, R. W.
  3. Jaids-Journal of Acquired Immune Deficiency Syndromes. 2003 34(4): 398-402.
  1. 16.   The solitary wave of asexual evolution
  2. Rouzine, I. M.; Wakeley, J.; Coffin, J. M.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2003 100(2): 587-592.
  1. 17.   Effect of sequence polymorphism and drug resistance on two HIV- 1 Gag processing sites
  2. Feher, A.; Weber, I. T.; Bagossi, P.; Boross, P.; Mahalingam, B.; Louis, J. M.; Copeland, T. D.; Torshin, I. Y.; Harrison, R. W.; Tozser, J.
  3. European Journal of Biochemistry. 2002 269(16): 4114-4120.
  1. 18.   Increased fitness of drug resistant HIV-1 protease as a result of acquisition of compensatory mutations during suboptimal therapy
  2. Nijhuis, M.; Schuurman, R.; de Jong, D.; Erickson, J.; Gustchina, E.; Albert, J.; Schipper, P.; Gulnik, S.; Boucher, C. A. B.
  3. Aids. 1999 13(17): 2349-2359.
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