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  1. 1.   A high-resolution HLA reference panel capturing global population diversity enables multi-ancestry fine-mapping in HIV host response
  2. Luo, Yang; Kanai, Masahiro; Choi, Wanson; Li, Xinyi; Sakaue, Saori; Yamamoto, Kenichi; Ogawa, Kotaro; Gutierrez-Arcelus, Maria; Gregersen, Peter K.; Stuart, Philip E.; Elder, James T.; Forer, Lukas; Schoenherr, Sebastian; Fuchsberger, Christian; Smith, Albert V.; Fellay, Jacques; Carrington,Mary; Haas, David W.; Guo, Xiuqing; Palmer, Nicholette D.; Chen, Yii-Der Ida; Rotter, Jerome I.; Taylor, Kent D.; Rich, Stephen S.; Correa, Adolfo; Wilson, James G.; Kathiresan, Sekar; Cho, Michael H.; Metspalu, Andres; Esko, Tonu; Okada, Yukinori; Han, Buhm; McLaren, Paul J.; Raychaudhuri, Soumya
  3. Nature Genetics. 2021, Oct; 53(10): 1504-1516.
  1. 2.   Computationally Optimized SARS-CoV-2 MHC Class I and II Vaccine Formulations Predicted to Target Human Haplotype Distributions
  2. Liu, Ge; Carter, Brandon; Bricken, Trenton; Jain, Siddhartha; Viard,Mathias; Carrington,Mary; Gifford, David K
  3. Cell systems. 2020, AUG 26; 11(2): 131-144.e6.
  1. 3.   Diversity of the KIR gene cluster in an urban Brazilian population
  2. Augusto, D. G.; Zehnder-Alves, L.; Pincerati, M. R.; Martin, M. P.; Carrington, M.; Petzl-Erler, M. L.
  3. Immunogenetics. 2012, Feb; 64(2): 143-152.
  1. 4.   Psoriasis Patients Are Enriched for Genetic Variants That Protect against HIV-1 Disease
  2. Chen, H. Y.; Hayashi, G.; Lai, O. Y.; Dilthey, A.; Kuebler, P. J.; Wong, T. V.; Martin, M. P.; Vina, M. A. F.; McVean, G.; Wabl, M.; Leslie, K. S.; Maurer, T.; Martin, J. N.; Deeks, S. G.; Carrington, M.; Bowcock, A. M.; Nixon, D. F.; Liao, W.
  3. Plos Genetics. 2012, Feb; 8(2):
  1. 5.   A Flexible Bayesian Model for Studying Gene-Environment Interaction
  2. Yu, K.; Wacholder, S.; Wheeler, W.; Wang, Z. M.; Caporaso, N.; Landi, M. T.; Liang, F. M.
  3. Plos Genetics. 2012, Jan; 8(1):
  1. 6.   Characterization, Mapping, and Distribution of the Two XMRV Parental Proviruses
  2. Cingoz, O.; Paprotka, T.; Delviks-Frankenberry, K. A.; Wildt, S.; Hu, W. S.; Pathak, V. K.; Coffin, J. M.
  3. Journal of Virology. 2012, Jan; 86(1): 328-338.
  1. 7.   The Shaping of Modern Human Immune Systems by Multiregional Admixture with Archaic Humans
  2. Abi-Rached, L.; Jobin, M. J.; Kulkarni, S.; McWhinnie, A.; Dalva, K.; Gragert, L.; Babrzadeh, F.; Gharizadeh, B.; Luo, M.; Plummer, F. A.; Kimani, J.; Carrington, M.; Middleton, D.; Rajalingam, R.; Beksac, M.; Marsh, S. G. E.; Maiers, M.; Guethlein, L. A.; Tavoularis, S.; Little, A. M.; Green, R. E.; Norman, P. J.; Parham, P.
  3. Science. 2011, Oct; 333(6052): 89-94.
  1. 8.   Estimate of effective recombination rate and average selection coefficient for HIV in chronic infection
  2. Batorsky, R.; Kearney, M. F.; Palmer, S. E.; Maldarelli, F.; Rouzine, I. M.; Coffin, J. M.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2011, Apr; 108(14): 5661-5666.
  1. 9.   Similarity in Recombination Rate Estimates Highly Correlates with Genetic Differentiation in Humans
  2. Laayouni, H. L. H.; Montanucci, L.; Sikora, M.; Mele, M.; Dall'Olio, G. M.; Lorente-Galdos, B.; McGee, K. M.; Graffelman, J.; Awadalla, P.; Bosch, E.; Comas, D.; Navarro, A.; Calafell, F.; Casals, F.; Bertranpetit, J.
  3. Plos One. 2011, Mar; 6(3): 8.
  1. 10.   Accounting for multiple comparisons in a genome-wide association study (GWAS)
  2. Johnson, R. C.; Nelson, G. W.; Troyer, J. L.; Lautenberger, J. A.; Kessing, B. D.; Winkler, C. A.; O'Brien, S. J.
  3. Bmc Genomics. 2010, Dec; 11: 6.
  1. 11.   Effect of Host Genetics on the Development of Cytomegalovirus Retinitis in Patients with AIDS
  2. Sezgin, E.; Jabs, D. A.; Hendrickson, S. L.; Van Natta, M.; Zdanov, A.; Lewis, R. A.; Smith, M. W.; Troyer, J. L.; O'Brien, S. J.; Soca Res, G.
  3. Journal of Infectious Diseases. 2010, Aug 15; 202(4): 606-613.
  1. 12.   Effect of Host Genetics on Incidence of HIV Neuroretinal Disorder in Patients With AIDS
  2. Sezgin, E.; Hendrickson, S. L.; Jabs, D. A.; Van Natta, M. L.; Lewis, R. A.; Troyer, J. L.; O'Brien, S. J.; Grp, S. R.
  3. Jaids-Journal of Acquired Immune Deficiency Syndromes. 2010, Aug; 54(4): 343-351.
  1. 13.   Haplotype-dependent HLA susceptibility to nasopharyngeal carcinoma in a Southern Chinese population
  2. Tang, M.; Zeng, Y.; Poisson, A.; Marti, D.; Guan, L.; Zheng, Y.; Deng, H.; Liao, J.; Guo, X.; Sun, S.; Nelson, G.; de The, G.; Winkler, C. A.; O'Brien, S. J.; Carrington, M.; Gao, X.
  3. Genes and Immunity. 2010, Jun; 11(4): 334-342.
  1. 14.   Dense mapping of MYH9 localizes the strongest kidney disease associations to the region of introns 13 to 15
  2. Nelson, G. W.; Freedman, B. I.; Bowden, D. W.; Langefeld, C. D.; An, P.; Hicks, P. J.; Bostrom, M. A.; Johnson, R. C.; Kopp, J. B.; Winkler, C. A.
  3. Human Molecular Genetics. 2010, May; 19(9): 1805-1815.
  1. 15.   Mechanisms of copy number variation and hybrid gene formation in the KIR immune gene complex
  2. Traherne, J. A.; Martin, M.; Ward, R.; Ohashi, M.; Pellett, F.; Gladman, D.; Middleton, D.; Carrington, M.; Trowsdale, J.
  3. Human Molecular Genetics. 2010, Mar; 19(5): 737-751.
  1. 16.   Diversity in the Glucose Transporter-4 Gene (SLC2A4) in Humans Reflects the Action of Natural Selection along the Old-World Primates Evolution
  2. Tarazona-Santos, E.; Fabbri, C.; Yeager, M.; Magalhaes, W. C.; Burdett, L.; Crenshaw, A.; Pettener, D.; Chanock, S. J.
  3. Plos One. 2010, Mar; 5(3): 10.
  1. 17.   Genetic Structure in Contemporary South Tyrolean Isolated Populations Revealed by Analysis of Y-Chromosome, mtDNA, and Alu Polymorphisms
  2. Pichler, I.; Mueller, J. C.; Stefanov, S. A.; de Grandi, A.; Volpato, C. B.; Pinggera, G. K.; Mayr, A.; Ogriseg, M.; Ploner, F.; Meitinger, T.; Pramstaller, P. P.
  3. Human Biology. 2009, Oct-Dec; 81(5-6): 875-898.
  1. 18.   Prevalence in the United States of Selected Candidate Gene Variants
  2. Chang, M. H.; Lindegren, M. L.; Butler, M. A.; Chanock, S. J.; Dowling, N. F.; Gallagher, M.; Moonesinghe, R.; Moore, C. A.; Ned, R. M.; Reichler, M. R.; Sanders, C. L.; Welch, R.; Yesupriya, A.; Khoury, M. J.
  3. American Journal of Epidemiology. 2009 169(1): 54-66.
  1. 19.   Genome and gene alterations by insertions and deletions in the evolution of human and chimpanzee chromosome 22
  2. Volfovsky, N.; Oleksyk, T. K.; Cruz, K. C.; Truelove, A. L.; Stephens, R. M.; Smith, M. W.
  3. Bmc Genomics. 2009 10 AR 51
  1. 20.   High-throughput single nucleotide polymorphism genotyping using nanofluidic Dynamic Arrays
  2. Wang, J.; Lin, M.; Crenshaw, A.; Hutchinson, A.; Hicks, B.; Yeager, M.; Berndt, S.; Huang, W. Y.; Hayes, R. B.; Chanock, S. J.; Jones, R. C.; Ramakrishnan, R.
  3. Bmc Genomics. 2009 10
  1. 21.   The signatures of autozygosity among patients with colorectal cancer
  2. Bacolod, M. D.; Schemmann, G. S.; Wang, S.; Shattock, R.; Giardina, S. F.; Zeng, Z. S.; Shia, J. R.; Stengel, R. F.; Gerry, N.; Hoh, J.; Kirchhoff, T.; Gold, B.; Christman, M. F.; Offit, K.; Gerald, W. L.; Notterman, D. A.; Ott, J.; Paty, P. B.
  3. Cancer Research. 2008 68(8): 2610-2621.
  1. 22.   Polymorphic variants in PTGS2 and prostate cancer risk: results from two large nested case-control studies
  2. Danforth, K. N.; Hayes, R. B.; Rodriguez, C.; Yu, K.; Sakoda, L. C.; Huang, W. Y.; Chen, B. E.; Chen, J. B.; Andriole, G. L.; Calle, E. E.; Jacobs, E. J.; Chu, L. W.; Figueroa, J. D.; Yeager, M.; Platz, E. A.; Michaud, D. S.; Chanock, S. J.; Thun, M.
  3. Carcinogenesis. 2008 29(3): 568-572.
  1. 23.   MYH9 is a major-effect risk gene for focal segmental glomerulosclerosis
  2. Kopp, J. B.; Smith, M. W.; Nelson, G. W.; Johnson, R. C.; Freedman, B. I.; Bowden, D. W.; Oleksyk, T.; McKenzie, L. M.; Kajiyama, H.; Ahuja, T. S.; Berns, J. S.; Briggs, W.; Cho, M. E.; Dart, R. A.; Kimmel, P. L.; Korbet, S. M.; Michel, D. M.
  3. Nature Genetics. 2008 40(10): 1175-1184.
  1. 24.   Comparison of the rapidly evolving KIR locus in Parsis and natives of India
  2. Kulkarni, S.; Single, R. M.; Martin, M. P.; Rajalingam, R.; Badwe, R.; Joshi, N.; Carrington, M.
  3. Immunogenetics. 2008 60(3-4): 121-129.
  1. 25.   Statistical Resolution of Ambiguous HLA Typing Data
  2. Listgarten, J.; Brumme, Z.; Kadie, C.; Gao, X. J.; Walker, B.; Carrington, M.; Goulder, P.; Heckerman, D.
  3. Plos Computational Biology. 2008 4(2):
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