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  1. 1.   ShiftScan: A tool for rapid analysis of high-throughput differential scanning fluorimetry data and compound prioritization
  2. Waterworth, Samantha C; Shenoy, Shilpa R; Sharma, Nirmala D; Wolcott,Chris; Donohue,Duncan; O'Keefe,Barry; Beutler,John
  3. Protein Science : a publication of the Protein Society. 2025, Mar; 34(3): e70055.
  1. 2.   Identification of molecular determinants of gene-specific bursting patterns by high-throughput imaging screens
  2. Sood, Varun; Holewinski,Ronald; Andresson,Thorkell; Larson, Daniel R; Misteli, Tom
  3. Molecular Cell. 2025, Feb 11;
  1. 3.   A patient-derived cell model for malignant transformation in IDH-mutant glioma
  2. Kim, Olga; Sergi, Zach; Yu, Guangyang; Yamamoto, Kazutoshi; Quezado, Martha; Abdullaev, Zied; Crooks, Danel R; Kishimoto, Shun; Li, Qi; Lu, Peng; Blackman, Burchelle; Andresson,Thorkell; Wu,Xiaolin; Tran,Bao; Wei, Jun S; Zhang, Wei; Zhang, Meili; Song, Hua; Khan, Javed; Krishna, Murali C; Brender, Jeffrey R; Wu, Jing
  3. Acta Neuropathologica Communications. 2024, Sep 10; 12(1): 148.
  1. 4.   Protocol for cytoskeleton staining of the semi-adherent multiple myeloma cell line RPMI 8226 by immunofluorescence
  2. Osei Amponsa,Vasty; Magidson,Valentin; Walters,Kylie
  3. STAR Protocols. 2024, May 02; 5(2): 103060.
  1. 5.   Screen for New Antimicrobial Natural Products from the NCI Program for Natural Product Discovery Prefractionated Extract Library
  2. Martínez-Fructuoso, Lucero; Arends, S J Ryan; Freire,Vitor; Evans,Jason; DeVries, Sean; Peyser,Brian; Akee,Rhone; Thornburg,Chris; Kumar,Rohitesh; Ensel,Susan; Morgan, Gina M; McConachie, Grant D; Veeder, Nathan; Duncan, Leonard R; Grkovic,Tanja; O'Keefe,Barry
  3. ACS Infectious Diseases. 2023, May 10;
  1. 6.   Detecting genomic deletions from high-throughput sequence data with unsupervised learning
  2. Li,Xin; Wu, Yufeng
  3. BMC Bioinformatics. 2023, Jan 27; 23(Suppl 8): 568.
  1. 7.   Systematic exploration of dynamic splicing networks reveals conserved multistage regulators of neurogenesis
  2. Han, Hong; Best, Andrew J; Braunschweig, Ulrich; Mikolajewicz, Nicholas; Li, Jack Daiyang; Roth, Jonathan; Chowdhury, Fuad; Mantica, Federica; Nabeel-Shah, Syed; Parada, Guillermo; Brown, Kevin R; O'Hanlon, Dave; Wei, Jiarun; Yao, Yuxi; Zid, Abdelrahman Abou; Comsa, Lim Caden; Jen, Mark; Wang, Jenny; Datti, Alessandro; Gonatopoulos Pournatzis,Thomas; Weatheritt, Robert J; Greenblatt, Jack F; Wrana, Jeffrey L; Irimia, Manuel; Gingras, Anne-Claude; Moffat, Jason; Blencowe, Benjamin J
  3. Molecular Cell. 2022, Jul 31; 82(16): 2982-2999.
  1. 8.   Inhibition of HSP 90 is associated with potent anti-tumor activity in Papillary Renal Cell Carcinoma
  2. Pahwa, Roma; Dubhashi, Janhavi; Singh, Anand; Jailwala, Parthav; Lobanov,Alexei; Thomas, Craig J; Ceribelli, Michele; Wilson, Kelli; Ricketts, Christopher J; Vocke, Cathy D; Wells, Catherine; Bottaro, Donald P; Linehan, W Marston; Neckers, Len; Srinivasan, Ramaprasad
  3. Journal of Experimental & Clinical Cancer Research : CR. 2022, Jun 27; 41(1): 208.
  1. 9.   Dataset of high-throughput ligand screening against the RNA Packaging Signals regulating Hepatitis B Virus nucleocapsid formation
  2. Abulwerdi, Fardokht; Fatehi, Farzad; Manfield, Iain W; Le Grice,Stuart; Schneekloth,Jay; Twarock, Reidun; Stockley, Peter G; Patel, Nikesh
  3. Data in Brief. 2022, Jun; 42: 108206.
  1. 10.   High-Resolution Ribosome Profiling for Determining Ribosome Functional States During Translation Elongation
  2. Shafieinouri,Mohammad; Santiago Membreno,Britnie; Wu,Colin
  3. Methods in Molecular Biology (Clifton, N.J.). 2022 2428: 173-186.
  1. 11.   Complex Tumor Spheroids, a Tissue-Mimicking Tumor Model, for Drug Discovery and Precision Medicine
  2. Kaur, Gurmeet; Evans, David M.; Teicher, Beverly A.; Coussens,Nathan
  3. SLAS Discovery. 2021, Nov 12;
  1. 12.   A Pilot Study of Dynamic 18F-DCFPyL PET/CT Imaging of Prostate Adenocarcinoma in High-Risk Primary Prostate Cancer Patients
  2. Lu, Michelle; Lindenberg, Liza; Mena, Esther; Turkbey, Baris; Seidel,Jurgen; Ton, Anita; McKinney, Yolanda; Eclarinal, Philip; Merino, Maria; Pinto, Peter; Choyke, Peter; Adler,Stephen
  3. Molecular Imaging and Biology. 2021, Nov 01;
  1. 13.   A practical guide to large-scale docking
  2. Bender, Brian J.; Gahbauer, Stefan; Luttens, Andreas; Lyu, Jiankun; Webb, Chase M.; Stein, Reed M.; Fink, Elissa A.; Balius,Trent; Carlsson, Jens; Irwin, John J.; Shoichet, Brian K.
  3. Nature protocols. 2021, Oct; 16(10): 4799-4832.
  1. 14.   In Vitro Ubiquitination Platform Identifies Methyl Ellipticiniums as Ubiquitin Ligase Inhibitors
  2. Wilson,Brice; Voeller, Donna; Smith,Emily; Wamiru,Antony; Goncharova,Katya; Liu, Gang; Lipkowitz, Stanley; O'Keefe,Barry
  3. SLAS DISCOVERY. 2021, Aug 21; 26(7, SI): 870-884.
  1. 15.   Arrow pushing in RNA modification sequencing
  2. Bartee,David; Thalalla Gamage,Supuni; Link,Courtney; Meier,Jordan
  3. Chemical Society reviews. 2021, Jul 14;
  1. 16.   Modulation of MHC-E transport by viral decoy ligands is required for RhCMV/SIV vaccine efficacy
  2. Verweij, Marieke C.; Hansen, Scott G.; Iyer, Ravi; John, Nessy; Malouli, Daniel; Morrow, David; Scholz, Isabel; Womack, Jennie; Abdulhaqq, Shaheed; Gilbride, Roxanne M.; Hughes, Colette M.; Ventura, Abigail B.; Ford, Julia C.; Selseth, Andrea N.; Oswald,Kelli; Shoemaker,Rebecca; Berkemeier,Brian; Bosche,Bj; Hull,Mike; Shao, Jason; Sacha, Jonah B.; Axthelm, Michael K.; Edlefsen, Paul T.; Lifson,Jeffrey; Picker, Louis J.; Frueh, Klaus
  3. Science. 2021, Apr 30; 372(6451):
  1. 17.   Sensitivity of Oncogenic KRAS-Expressing Cells to CDK9 Inhibition
  2. Lai, Lick Pui; Brel, Viviane; Sharma, Kanika; Frappier, Julia; Le-Henanf, Nadia; Vivet, Bertrand; Muzet, Nicolas; Schell, Emilie; Morales, Renaud; Rooney, Eamonn; Basse, Nicolas; Yi,Ming; Lacroix, Frederic; Holderfield, Matthew; Englaro, Walter; Marcireau, Christophe; Debussche, Laurent; Nissley,Dwight; McCormick, Frank
  3. SLAS DISCOVERY. 2021, Apr 24; 26(7, SI): 922-932.
  1. 18.   CD8(+) T cells fail to limit SIV reactivation following ART withdrawal until after viral amplification
  2. Okoye, Afam A.; Duell, Derick D.; Fukazawa, Yoshinori; Varco-Merth, Benjamin; Marenco, Alejandra; Behrens, Hannah; Chaunzwa, Morgan; Selseth, Andrea N.; Gilbride, Roxanne M.; Shao, Jason; Edlefsen, Paul T.; Geleziunas, Romas; Pinkevych, Mykola; Davenport, Miles P.; Busman-Sahay, Kathleen; Nekorchuk, Michael; Park, Haesun; Smedley, Jeremy; Axthelm, Michael K.; Estes, Jacob D.; Hansen, Scott G.; Keele,Brandon; Lifson,Jeffrey; Picker, Louis J.
  3. JOURNAL OF CLINICAL INVESTIGATION. 2021, Apr 15; 131(8):
  1. 20.   A Molecular Networking Strategy: High-Throughput Screening and Chemical Analysis of Brazilian Cerrado Plant Extracts against Cancer Cells
  2. Cortelo, Patricia C.; Demarque, Daniel P.; Dusi, Renata G.; Albernaz, Lorena C.; Braz-Filho, Raimundo; Goncharova, Ekaterina I.; Bokesch, Heidi R.; Gustafson, Kirk R.; Beutler, John A.; Espindola, Laila S.
  3. Cells. 2021, Mar; 10(3):
  1. 21.   IFN gamma Is a Key Link between Obesity and Th1-Mediated AutoImmune Diseases
  2. Bae,Heekyong; Choi, Myung-Sook; Kim, Suntae; Young,Howard; Gershwin, M. Eric; Jeon, Seon-Min; Kwon, Eun-Young
  3. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2021, Jan; 22(1):
  1. 22.   Three-Color Imaging Enables Simultaneous Screening of Multiple RNA Targets on Small Molecule Microarrays
  2. Jordan,Deondre; Yang,Mo; Schneekloth,Jay
  3. Current protocols in chemical biology. 2020, Dec; 12(4): e87.
  1. 23.   A Deep Learning Pipeline for Nucleus Segmentation
  2. Zaki,George; Gudla, Prabhakar R; Lee, Kyunghun; Kim, Justin; Ozbun, Laurent; Shachar, Sigal; Gadkari, Manasi; Sun, Jing; Fraser, Iain D C; Franco, Luis M; Misteli, Tom; Pegoraro, Gianluca
  3. CYTOMETRY PART A. 2020, NOV 19;
  1. 24.   Quantification of lactoyl-CoA (lactyl-CoA) by liquid chromatography mass spectrometry in mammalian cells and tissues
  2. Varner, Erika L; Trefely, Sophie; Bartee,David; von Krusenstiern, Eliana; Izzo, Luke; Bekeova, Carmen; O'Connor, Roddy S; Seifert, Erin L; Wellen, Kathryn E; Meier,Jordan; Snyder, Nathaniel W
  3. Open biology. 2020, SEP 23; 10(9): 200187.
  1. 25.   Identification of Potential Modulators of Osteosarcoma Metastasis by High Throughput Cellular Screening of Natural Products
  2. Long, Sarah A; Huang, Shan; Kambala, Anusha; Ren, Ling; Wilson,Jennifer; Goetz, Michael; Hao, Xiaojiang; Yang, Xiaosheng; Goncharova,Katya; Jia, Libin; LeBlanc, Amy; Khanna, Chand; Henrich,Curtis; Beutler,John
  3. Chemical biology & drug design. 2020, JUL 28;
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