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  1. 1.   Dynamic imaging of nascent RNA reveals general principles of transcription dynamics and stochastic splice site selection
  2. Wan, Yihan; Anastasakis, Dimitrios G.; Rodriguez, Joseph; Palangat, Murali; Gudla, Prabhakar; Zaki,George; Tandon,Mayank; Pegoraro, Gianluca; Chow, Carson C.; Hafner, Markus; Larson, Daniel R.
  3. CELL. 2021, May 27; 184(11): 2878-2895.e20.
  1. 2.   Distinct viral reservoirs in individuals with spontaneous control of HIV-1
  2. Jiang, Chenyang; Lian, Xiaodong; Gao, Ce; Sun, Xiaoming; Einkauf, Kevin B; Chevalier, Joshua M; Chen, Samantha M Y; Hua, Stephane; Rhee, Ben; Chang, Kaylee; Blackmer, Jane E; Osborn, Matthew; Peluso, Michael J; Hoh, Rebecca; Somsouk, Ma; Milush, Jeffrey; Bertagnolli, Lynn N; Sweet, Sarah E; Varriale, Joseph A; Burbelo, Peter D; Chun, Tae-Wook; Laird, Gregory M; Serrao, Erik; Engelman, Alan N; Carrington,Mary; Siliciano, Robert F; Siliciano, Janet M; Deeks, Steven G; Walker, Bruce D; Lichterfeld, Mathias; Yu, Xu G
  3. Nature. 2020, Aug 26;
  1. 3.   Biased antagonism of CXCR4 avoids antagonist tolerance
  2. Hitchinson, Ben; Eby, Jonathan M.; Gao, Xianlong; Guite-Vinet, Francois; Ziarek, Joshua J.; Abdelkarim, Hazem; Lee, Youngshim; Okamoto, Yukari; Shikano, Sojin; Majetschak, Matthias; Heveker, Nikolaus; Volkman, Brian F.; Tarasova,Nadya; Gaponenko, Vadim
  3. Science signaling. 2018, Oct 16; 11(552):
  1. 4.   Chemical and structural studies provide a mechanistic basis for recognition of the MYC G-quadruplex
  2. Calabrese,Dave; Chen,Xiang; Leon, Elena C.; Gaikwad, Snehal M.; Phyo, Zaw; Hewitt, William M.; Alden, Stephanie; Hilimire, Thomas A.; He, Fahu; Michalowski, Aleksandra M.; Simmons, John K.; Saunders, Lindsey B.; Zhang, Shuling; Connors, Daniel; Walters,Kylie; Mock, Beverly A.; Schneekloth,Jay
  3. NATURE COMMUNICATIONS. 2018, Oct 12; 9(1): 4229.
  1. 5.   Female chromosome X mosaicism is age-related and preferentially affects the inactivated X chromosome
  2. Machiela, Mitchell J.; Zhou, Weiyin; Karlins, Eric; Sampson, Joshua N.; Freedman, Neal D.; Yang, Qi; Hicks, Belynda; Dagnall, Casey; Hautman, Christopher; Jacobs, Kevin B.; Abnet, Christian C.; Aldrich, Melinda C.; Amos, Christopher; Amundadottir, Laufey T.; Arslan, Alan A.; Beane-Freeman, Laura E.; Berndt, Sonja I.; Black, Amanda; Blot, William J.; Bock, Cathryn H.; Bracci, Paige M.; Brinton, Louise A.; Bueno-de-Mesquita, H. Bas; Burdett, Laurie; Buring, Julie E.; Butler, Mary A.; Canzian, Federico; Carreon, Tania; Chaffee, Kari G.; Chang, I-Shou; Chatterjee, Nilanjan; Chen, Chu; Chen, Constance; Chen, Kexin; Chung, Charles; Cook, Linda S.; Bou, Marta Crous; Cullen, Michael; Davis, Faith G.; De Vivo, Immaculata; Ding, Ti; Doherty, Jennifer; Duell, Eric J.; Epstein, Caroline G.; Fan, Jin-Hu; Figueroa, Jonine D.; Fraumeni, Joseph F.; Friedenreich, Christine M.; Fuchs, Charles S.; Gallinger, Steven; Gao, Yu-Tang; Gapstur, Susan M.; Garcia-Closas, Montserrat; Gaudet, Mia M.; Gaziano, J. Michael; Giles, Graham G.; Gillanders, Elizabeth M.; Giovannucci, Edward L.; Goldin, Lynn; Goldstein, Alisa M.; Haiman, Christopher A.; Hallmans, Goran; Hankinson, Susan E.; Harris, Curtis C.; Henriksson, Roger; Holly, Elizabeth A.; Hong, Yun-Chul; Hoover, Robert N.; Hsiung, Chao A.; Hu, Nan; Hu, Wei; Hunter, David J.; Hutchinson, Amy; Jenab, Mazda; Johansen, Christoffer; Khaw, Kay-Tee; Kim, Hee Nam; Kim, Yeul Hong; Kim, Young Tae; Klein, Alison P.; Klein, Robert; Koh, Woon-Puay; Kolonel, Laurence N.; Kooperberg, Charles; Kraft, Peter; Krogh, Vittorio; Kurtz, Robert C.; LaCroix, Andrea; Lan, Qing; Landi, Maria Teresa; Li, Donghui; Liang, Xiaolin; Liao, Linda M.; Lin, Dongxin; Liu, Jianjun; Lissowska, Jolanta; Lu, Lingeng; Magliocco, Anthony M.; Malats, Nuria; Matsuo, Keitaro; McNeill, Lorna H.; McWilliams, Robert R.; Melin, Beatrice S.; Mirabello, Lisa; Moore, Lee; Olson, Sara H.; Orlow, Irene; Park, Jae Yong; Patino-Garcia, Ana; Peplonska, Beata; Peters, Ulrike; Petersen, Gloria M.; Pooler, Loreall; Prescott, Jennifer; Prokunina-Olsson, Ludmila; Purdue, Mark P.; Qiao, You-Lin; Rajaraman, Preetha; Real, Francisco X.; Riboli, Elio; Risch, Harvey A.; Rodriguez-Santiago, Benjamin; Ruder, Avima M.; Savage, Sharon A.; Schumacher, Fredrick; Schwartz, Ann G.; Schwartz, Kendra L.; Seow, Adeline; Setiawan, Veronica Wendy; Severi, Gianluca; Shen, Hongbing; Sheng, Xin; Shin, Min-Ho; Shu, Xiao-Ou; Silverman, Debra T.; Spitz, Margaret R.; Stevens, Victoria L.; Stolzenberg-Solomon, Rachael; Stram, Daniel; Tang, Ze-Zhong; Taylor, Philip R.; Teras, Lauren R.; Tobias, Geoffrey S.; Van den Berg, David; Visvanathan, Kala; Wacholder, Sholom; Wang, Jiu-Cun; Wang, Zhaoming; Wentzensen, Nicolas; Wheeler, William; White, Emily; Wiencke, John K.; Wolpin, Brian M.; Wong, Maria Pik; Wu, Chen; Wu, Tangchun; Wu, Xifeng; Wu, Yi-Long; Wunder, Jay S.; Xia, Lucy; Yang, Hannah P.; Yang, Pan-Chyr; Yu, Kai; Zanetti, Krista A.; Zeleniuch-Jacquotte, Anne; Zheng, Wei; Zhou, Baosen; Ziegler, Regina G.; Perez-Jurado, Luis A.; Caporaso, Neil E.; Rothman, Nathaniel; Tucker, Margaret; Dean, Michael C.; Yeager, Meredith; Chanock, Stephen J.
  3. NATURE COMMUNICATIONS. 2016, Jun 13; 7
  1. 6.   The landscape of recombination in African Americans
  2. Hinch, A. G.; Tandon, A.; Patterson, N.; Song, Y. L.; Rohland, N.; Palmer, C. D.; Chen, G. K.; Wang, K.; Buxbaum, S. G.; Akylbekova, E. L.; Aldrich, M. C.; Ambrosone, C. B.; Amos, C.; Bandera, E. V.; Berndt, S. I.; Bernstein, L.; Blot, W. J.; Bock, C. H.; Boerwinkle, E.; Cai, Q. Y.; Caporaso, N.; Casey, G.; Cupples, L. A.; Deming, S. L.; Diver, W. R.; Divers, J.; Fornage, M.; Gillanders, E. M.; Glessner, J.; Harris, C. C.; Hu, J. J.; Ingles, S. A.; Isaacs, W.; John, E. M.; Kao, W. H. L.; Keating, B.; Kittles, R. A.; Kolonel, L. N.; Larkin, E.; Le Marchand, L.; McNeill, L. H.; Millikan, R. C.; Murphy, A.; Musani, S.; Neslund-Dudas, C.; Nyante, S.; Papanicolaou, G. J.; Press, M. F.; Psaty, B. M.; Reiner, A. P.; Rich, S. S.; Rodriguez-Gil, J. L.; Rotter, J. I.; Rybicki, B. A.; Schwartz, A. G.; Signorello, L. B.; Spitz, M.; Strom, S. S.; Thun, M. J.; Tucker, M. A.; Wang, Z. M.; Wiencke, J. K.; Witte, J. S.; Wrensch, M.; Wu, X. F.; Yamamura, Y.; Zanetti, K. A.; Zheng, W.; Ziegler, R. G.; Zhu, X. F.; Redline, S.; Hirschhorn, J. N.; Henderson, B. E.; Taylor, H. A.; Price, A. L.; Hakonarson, H.; Chanock, S. J.; Haiman, C. A.; Wilson, J. G.; Reich, D.; Myers, S. R.
  3. Nature. 2011, Aug; 476(7359): 170-U67.
  1. 7.   Identification of Replication Competent Murine Gammaretroviruses in Commonly Used Prostate Cancer Cell Lines
  2. Sfanos, K. S.; Aloia, A. L.; Hicks, J. L.; Esopi, D. M.; Steranka, J. P.; Shao, W.; Sanchez-Martinez, S.; Yegnasubramanian, S.; Burns, K. H.; Rein, A.; De Marzo, A. M.
  3. Plos One. 2011, Jun; 6(6): 6.
  1. 8.   High recombination rates and hotspots in a Plasmodium falciparum genetic cross
  2. Jiang, H. Y.; Li, N.; Gopalan, V.; Zilversmit, M. M.; Varma, S.; Nagarajan, V.; Li, J.; Mu, J. B.; Hayton, K.; Henschen, B.; Yi, M.; Stephens, R.; McVean, G.; Awadalla, P.; Wellems, T. E.; Su, X. Z.
  3. Genome Biology. 2011, Apr 4; 12(4): 14.
  1. 9.   Similarity in Recombination Rate Estimates Highly Correlates with Genetic Differentiation in Humans
  2. Laayouni, H. L. H.; Montanucci, L.; Sikora, M.; Mele, M.; Dall'Olio, G. M.; Lorente-Galdos, B.; McGee, K. M.; Graffelman, J.; Awadalla, P.; Bosch, E.; Comas, D.; Navarro, A.; Calafell, F.; Casals, F.; Bertranpetit, J.
  3. Plos One. 2011, Mar; 6(3): 8.
  1. 10.   Dense mapping of MYH9 localizes the strongest kidney disease associations to the region of introns 13 to 15
  2. Nelson, G. W.; Freedman, B. I.; Bowden, D. W.; Langefeld, C. D.; An, P.; Hicks, P. J.; Bostrom, M. A.; Johnson, R. C.; Kopp, J. B.; Winkler, C. A.
  3. Human Molecular Genetics. 2010, May; 19(9): 1805-1815.
  1. 11.   Diversity in the Glucose Transporter-4 Gene (SLC2A4) in Humans Reflects the Action of Natural Selection along the Old-World Primates Evolution
  2. Tarazona-Santos, E.; Fabbri, C.; Yeager, M.; Magalhaes, W. C.; Burdett, L.; Crenshaw, A.; Pettener, D.; Chanock, S. J.
  3. Plos One. 2010, Mar; 5(3): 10.
  1. 12.   Lens epithelium-derived growth factor fusion proteins redirect HIV-1 DNA integration
  2. Ferris, A. L.; Wu, X. L.; Hughes, C. M.; Stewart, C.; Smith, S. J.; Milne, T. A.; Wang, G. G.; Shun, M. C.; Allis, C. D.; Engelman, A.; Hughes, S. H.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2010, Feb 16; 107(7): 3135-3140.
  1. 13.   Lsh Mediated RNA Polymerase II Stalling at HoxC6 and HoxC8 Involves DNA Methylation
  2. Tao, Y. G.; Xi, S. C.; Briones, V.; Muegge, K.
  3. Plos One. 2010, Feb; 5(2): e9163.
  1. 14.   Extensive variation between inbred mouse strains due to endogenous L1 retrotransposition
  2. Akagi, K.; Li, J. F.; Stephens, R. M.; Volfovsky, N.; Symer, D. E.
  3. Genome Research. 2008 18(6): 869-880.
  1. 15.   Discovery of novel tumor suppressor p53 response elements using information theory
  2. Lyakhov, I. G.; Krishnamachari, A.; Schneider, T. D.
  3. Nucleic Acids Research. 2008 36(11): 3828-3833.
  1. 16.   Validation of the performance of a comprehensive genotyping assay panel of single nucleotide polymorphisms in drug metabolism enzyme genes
  2. Welch, R. A.; Lazaruk, K.; Haque, K. A.; Hyl, F.; Xiao, N. Q.; Wronka, L.; Burdett, L.; Chanock, S. J.; Ingber, D.; De La Vega, F. M.; Yeager, M.
  3. Human Mutation. 2008 29(5): 750-756.
  1. 17.   A mutation in KIR3DS1 that results in truncation and lack of cell surface expression
  2. Martin, M. P.; Pascal, V.; Yeager, M.; Phair, J.; Kirk, G. D.; Hoots, K.; O'Brien, S. J.; Anderson, S. K.; Carrington, M.
  3. Immunogenetics. 2007, Oct; 59(10): 823-829.
  1. 18.   cis sequence effects on gene expression
  2. Bergen, A. W.; Baccarelli, A.; McDaniel, T. K.; Kuhn, K.; Pfeiffer, R.; Kakol, J.; Bender, P.; Jacobs, K.; Packer, B.; Chanock, S. J.; Yeager, M.
  3. Bmc Genomics. 2007, Aug; 8
  1. 19.   Transduction of rhesus macaque hematopoietic stem and progenitor cells with avian sarcoma and leukosis viral vectors
  2. Hu, J. Q.; Ferris, A.; Larochelle, A.; Krouse, A. E.; Metzger, M. E.; Donahue, R. E.; Hughes, S. H.; Dunbar, C. E.
  3. Human Gene Therapy. 2007, Aug; 18(8): 691-700.
  1. 20.   ISHAPE: new rapid and accurate software for haplotyping
  2. Delaneau, O.; Coulonges, C.; Boelle, P. Y.; Nelson, G.; Spadoni, J. L.; Zagury, J. F.
  3. Bmc Bioinformatics. 2007, Jun; 8
  1. 21.   Hairpin- and cruciform-mediated chromosome breakage: causes and consequences in eukaryotic cells
  2. Lobachev, K. S.; Rattray, A.; Narayanan, V.
  3. Frontiers in Bioscience. 2007, May; 12: 4208-4220.
  1. 22.   A high-resolution HLA and SNP haplotype map for disease association studies in the extended human MHC
  2. de Bakker, P. I. W.; McVean, G.; Sabeti, P. C.; Miretti, M. M.; Green, T.; Marchini, J.; Ke, X. Y.; Monsuur, A. J.; Whittaker, P.; Delgado, M.; Morrison, J.; Richardson, A.; Walsh, E. C.; Gao, X. J.; Galver, L.; Hart, J.; Hafler, D. A.; Pericak-Vance, M.; Todd, J. A.; Daly, M. J.; Trowsdale, J.; Wijmenga, C.; Vyse, T. J.; Beck, S.; Murray, S. S.; Carrington, M.; Gregory, S.; Deloukas, P.; Rioux, J. D.
  3. Nature Genetics. 2006, Oct; 38(10): 1166-1172.
  1. 23.   Extended haplotypes in the complement factor H (CFH) and CFH-related (CFHR) family of genes protect against age-related macular degeneration: Characterization, ethnic distribution and evolutionary implications
  2. Hageman, G. S.; Hancox, L. S.; Taiber, A. J.; Gehrs, K. M.; Anderson, D. H.; Johnson, L. V.; Radeke, M. J.; Kavanagh, D.; Richards, A.; Atkinson, J.; Meri, S.; Bergeron, J.; Zernant, J.; Merriam, J.; Gold, B.; Allikmets, R.; Dean, Michael; Grp, A. M. D. C. S.
  3. Annals of Medicine. 2006 38(8): 592-604.
  1. 24.   Genetic analysis of completely sequenced disease-associated MHC haplotypes identifies shuffling of segments in recent human history
  2. Traherne, J. A.; Horton, R.; Roberts, A. N.; Miretti, M.; Hurles, M. E.; Stewart, C. A.; Ashurst, J. L.; Atrazhev, A. M.; Coggill, P.; Palmer, S.; Almeida, J.; Sims, S.; Wilming, L. G.; Rogers, J.; de Jong, P. J.; Carrington, M.; Elliott, J. F.; Sawcer, S.; Todd, J. A.; Trowsdale, J.; Beck, S.
  3. Plos Genetics. 2006, Jan; 2(1): 81-92.
  1. 25.   The RIO kinases: An atypical protein kinase family required for ribosome biogenesis and cell cycle progression
  2. Laronde-Leblanc, N.; Wlodawer, A.
  3. Biochimica Et Biophysica Acta-Proteins and Proteomics. 2005, DEC 30; 1754(1-2, Sp. Iss.): 14-24.
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