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  1. 1.   Crystal structure of N-{N-[N-acetyl-(S)-leuc-yl]-(S)-leuc-yl}norleucinal (ALLN), an inhibitor of proteasome
  2. Czerwinski, Andrzej; Basava, Channa; Dauter, Miroslawa; Dauter, Zbigniew
  3. Acta crystallographica. Section E, Crystallographic communications. 2015, Mar 01; 71(Pt 3): 254-7.
  1. 2.   Structure of a eukaryotic RNase III postcleavage complex reveals a double-ruler mechanism for substrate selection
  2. Liang, Y. H.; Lavoie, M.; Comeau, M. A.; Abou Elela, S.; Ji, X.
  3. Molecular Cell. 2014, 8-May; 54(3): 431-44.
  1. 3.   Crystal structures of beta-1,4-galactosyltransferase 7 enzyme reveal conformational changes and substrate binding
  2. Tsutsui, Y.; Ramakrishnan, B.; Qasba, P. K.
  3. Journal of Biological Chemistry. 2013, 1-Nov; 288(44): 31963-70.
  1. 4.   Structural mimicry of CD4 by a cross-reactive HIV-1 neutralizing antibody with CDR-H2 and H3 containing unique motifs
  2. Prabakaran, P.; Gan, J. H.; Wu, Y. Q.; Zhang, M. Y.; Dimitrov, D. S.; Ji, X. H.
  3. Journal of Molecular Biology. 2006, MAR 17; 357(1): 82-99.
  1. 5.   Structural and dynamical classification of RNA single-base bulges for nanostructure design
  2. Hastings, W. A.; Yingling, Y. G.; Chirikjian, G. S.; Shapiro, B. A.
  3. Journal of Computational and Theoretical Nanoscience. 2006, FEB; 3(1): 63-77.
  1. 6.   Structure-based discovery of a boronic acid bioisostere of combretastatin A-4
  2. Kong, Y.; Grembecka, J.; Edler, M. C.; Hamel, E.; Mooberry, S. L.; Sabat, M.; Rieger, J.; Brown, M. L.
  3. Chemistry & Biology. 2005, SEP; 12(9): 1007-1014.
  1. 7.   Energy landscape of amyloidogenic peptide oligomerization by parallel-tempering molecular dynamics simulation: Significant role of Asn ladder
  2. Tsai, H. H.; Reches, M.; Tsai, C. J.; Gunasekaran, K.; Gazit, E.; Nussinov, R.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2005, JUN 7; 102(23): 8174-8179.
  1. 8.   Binding affinity difference induced by the stereochemistry of the sulfoxide bridge of the cyclic peptide inhibitors of Grb2-SH2 domain: NMR studies for the structural origin
  2. Shi, Y. H.; Song, Y. L.; Lin, D. H.; Tan, J. Z.; Roller, P. P.; Li, Q.; Long, Y. Q.; Song, G. Q.
  3. Biochemical and Biophysical Research Communications. 2005, MAY 20; 330(4): 1254-1261.
  1. 9.   Dynamic behavior of the telomerase RNA hairpin structure and its relationship to dyskeratosis congenita
  2. Yingling, Y. G.; Shapiro, B. A.
  3. Journal of Molecular Biology. 2005, APR 22; 348(1): 27-42.
  1. 10.   Mutation of arginine 228 to lysine enhances the glucosyltransferase activity of bovine beta-1,4-galactosyltransferase I
  2. Ramakrishnan, B.; Boeggeman, E.; Qasba, P. K.
  3. Biochemistry. 2005, MAR 8; 44(9): 3202-3210.
  1. 11.   A comparative study of amyloid fibril formation by residues 15-19 of the human calcitonin hormone: A single beta-sheet model with a small hydrophobic core
  2. Haspel, N.; Zanuy, D.; Ma, B. Y.; Wolfson, H.; Nussinov, R.
  3. Journal of Molecular Biology. 2005, FEB 4; 345(5): 1213-1227.
  1. 12.   Favorable scaffolds: proteins with different sequence, structure and function may associate in similar ways
  2. Keskin, O.; Nussinov, R.
  3. Protein Engineering Design & Selection. 2005, JAN; 18(1): 11-24.
  1. 13.   Small nonphosphorylated Grb2-SH2 domain antagonists evaluated by surface resonance plasmon technology
  2. Lung, F. D. T.; Chang, C. W.; Chong, M. C.; Liou, C. C.; Li, P.; Peach, M. L.; Nicklaus, M. C.; Lou, B. S.; Roller, P. P.
  3. Peptide Science (Biopolymers). 2005 80(5): 628-635.
  1. 14.   Crystal structure of human glutathione S-transferase A3-3 and mechanistic implications for its high steroid isomerase activity
  2. Gu, Y. J.; Guo, J. X.; Pal, A.; Pan, S. S.; Zimniak, P.; Singh, S. V.; Ji, X. H.
  3. Biochemistry. 2004, DEC 21; 43(50): 15673-15679.
  1. 15.   Protein-protein interactions: Hot spots and structurally conserved residues often locate in complemented pockets that pre-organized in the unbound states: Implications for docking
  2. Li, X.; Keskin, O.; Ma, B. Y.; Nussinov, R.; Liang, J.
  3. Journal of Molecular Biology. 2004, NOV 26; 344(3): 781-795.
  1. 16.   Conformationally constrained analogues of diacylglycerol (DAG). 23. Hydrophobic ligand-protein interactions versus ligand-lipid interactions of DAG-lactones with protein kinase C (PK-C)
  2. Tamamura, H.; Sigano, D. M.; Lewin, N. E.; Peach, M. L.; Nicklaus, M. C.; Blumberg, P. M.; Marquez, V. E.
  3. Journal of Medicinal Chemistry. 2004, SEP 23; 47(20): 4858-4864.
  1. 17.   Different roles of electrostatics in heat and in cold: Adaptation by citrate synthase
  2. Kumar, S.; Nussinov, R.
  3. Chembiochem. 2004 5(3): 280-290.
  1. 18.   Modeling of serine protease prototype reactions with the flexible effective fragment potential quantum mechanical/molecular mechanical method
  2. Nemukhin, A. V.; Grigorenko, B. L.; Rogov, A. V.; Topol, I. A.; Burt, S. K.
  3. Theoretical Chemistry Accounts. 2004 111(1): 36-48.
  1. 19.   De novo design and characterization of a helical hairpin eicosapeptide: Emergence of an anion receptor in the linker region
  2. Rudresh; Ramakumar, S.; Ramagopal, U. A.; Inai, Y.; Goel, S.; Sahal, D.
  3. Structure. 2004 12(3): 389-396.
  1. 20.   PCR amplification of DNA containing non-standard base pairs by variants of reverse transcriptase from Human Immunodeficiency Virus-1
  2. Sismour, A. M.; Lutz, S.; Park, J. H.; Lutz, M. J.; Boyer, P. L.; Hughes, S. H.; Benner, S. A.
  3. Nucleic Acids Research. 2004 32(2): 728-735.
  1. 21.   Ultrahigh resolution drug design I: Details of interactions in human aldose reductase-inhibitor complex at 0.66 angstrom
  2. Howard, E. I.; Sanishvili, R.; Cachau, R. E.; Mitschler, A.; Chevrier, B.; Barth, P.; Lamour, V.; Van Zandt, M.; Sibley, E.; Bon, C.; Moras, D.; Schneider, T. R.; Joachimiak, A.; Podjarny, A.
  3. Proteins-Structure Function and Bioinformatics. 2004 55(4): 792-804.
  1. 22.   Energy landscape and dynamics of the beta-hairpin G peptide and its isomers: Topology and sequences
  2. Ma, B. Y.; Nussinov, R.
  3. Protein Science. 2003 12(9): 1882-1893.
  1. 23.   Hydrogen bonds in human ubiquitin reflected in temperature coefficients of amide protons
  2. Cierpicki, T.; Zhukov, I.; Byrd, R. A.; Otlewski, J.
  3. Journal of Magnetic Resonance. 2002 157(2): 178-180.
  1. 24.   Short-strong hydrogen bonds and a low barrier transition state for the proton transfer reaction in RNase A catalysis: a quantum chemical study
  2. Vishveshwara, S.; Madhusudhan, M. S.; Maizel, J. V.
  3. Biophysical Chemistry. 2001 89(2-3): 105-117.
  1. 25.   Structural complexity and population analysis of hydrogen-bonded networks in proteins
  2. Arteca, G. A.; Luo, X.
  3. Theochem-Journal of Molecular Structure. 2000 501: 479-493.
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