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  1. 1.   Affinity Tag-Free Purification of SARS-CoV-2 N Protein and Its Crystal Structure in Complex with ssDNA
  2. Maiti,Atanu; Matsuo,Hiroshi
  3. Biomolecules. 2024, Nov 30; 14(12):
  1. 2.   Kinetic Studies on the Interaction of HIV-1 Gag Protein with the HIV-1 RNA Packaging Signal
  2. Rink,Connie; Kroupa, Tomas; Rein,Alan; Datta,Siddhartha
  3. Viruses. 2024, Sep 25; 16(10): 1517.
  1. 3.   Multifaceted roles for STAT3 in gammaherpesvirus latency revealed through in vivo B cell knockout models
  2. Hogan, Chad H; Owens, Shana M; Reynoso, Glennys V; Liao, Yifei; Meyer,Thomas; Zelazowska, Monika A; Liu, Bin; Li, Xiaofan; Grosskopf, Anna K; Khairallah, Camille; Kirillov, Varvara; Reich, Nancy C; Sheridan, Brian S; McBride, Kevin M; Gewurz, Benjamin E; Hickman, Heather D; Forrest, J Craig; Krug, Laurie T
  3. mBio. 2024, Jan 03; e0299823.
  1. 4.   Natural history of Ebola virus disease in rhesus monkeys shows viral variant emergence dynamics and tissue-specific host responses
  2. Normandin, Erica; Triana, Sergio; Raju, Siddharth S; Lan, Tammy C T; Lagerborg, Kim; Rudy, Melissa; Adams, Gordon C; DeRuff, Katherine C; Logue, James; Liu, David; Strebinger, Daniel; Rao, Arya; Messer, Katelyn S; Sacks, Molly; Adams, Ricky D; Janosko, Krisztina; Kotliar, Dylan; Shah, Rickey; Crozier,Ian; Rinn, John L; Melé, Marta; Honko, Anna N; Zhang, Feng; Babadi, Mehrtash; Luban, Jeremy; Bennett, Richard S; Shalek, Alex K; Barkas, Nikolaos; Lin, Aaron E; Hensley, Lisa E; Sabeti, Pardis C; Siddle, Katherine J
  3. Cell Genomics. 2023, Dec 13; 3(12): 100440.
  1. 5.   Imaging the cellular response to an antigen tagged interstrand crosslinking agent
  2. Bellani, Marina A; Huang, Jing; Zhang, Jing; Gali,Himabindu; Thazhathveetil, Arun Kalliat; Pokharel, Durga; Majumdar, Ishani; Shaik, Althaf; Seidman, Michael M
  3. DNA Repair. 2023, Jun 09; 128: 103525.
  1. 6.   Reproducibility metrics for context-specific CRISPR screens
  2. Billmann, Maximilian; Ward, Henry N; Aregger,Michael; Costanzo, Michael; Andrews, Brenda J; Boone, Charles; Moffat, Jason; Myers, Chad L
  3. Cell Systems. 2023, May 17; 14(5): 418-422.e2.
  1. 7.   Cross-linking mass spectrometry for mapping protein complex topologies in situ
  2. Lee,Kitaik; O'Reilly,Francis
  3. Essays in Biochemistry. 2023, Feb 03;
  1. 8.   Structural basis for cell type specific DNA binding of C/EBPß: the case of cell cycle inhibitor p15INK4b promoter
  2. Lountos, George T; Cherry, Scott; Tropea, Joseph E; Wlodawer, Alexander; Miller, Maria
  3. Journal of Structural Biology. 2022, Nov 04; 214(4): 107918.
  1. 9.   Spatial and Functional Organization of Human Papillomavirus Replication Foci in the Productive Stage of Infection
  2. Khurana, Simran; Markowitz,Tovah; Kabat, Juraj; McBride, Alison A
  3. mBio. 2021, Dec 21; 12(6): e0268421.
  1. 10.   The tumor suppressor activity of DLC1 requires the interaction of its START domain with Phosphatidylserine, PLCD1, and Caveolin-1
  2. Sanchez-Solana, Beatriz; Wang, Dunrui; Qian, Xiaolan; Velayoudame, Parthibane; Simanshu,Dhirendra; Acharya,Jairaj; Lowy, Douglas R
  3. Molecular Cancer. 2021, Nov 02; 20(1):
  1. 11.   Structural studies of complexes of kallikrein 4 with wild-type and mutated forms of the Kunitz-type inhibitor BbKI
  2. Li,Mi; Srp, Jaroslav; Mares, Michael; Wlodawer,Alexander; Gustchina,Alla
  3. Acta crystallographica. Section D, Structural biology. 2021, Aug 1; 77(Pt 8): 1084-1098.
  1. 12.   How to package the RNA of HIV-1
  2. Kleinpeter,Alex; Freed,Eric
  3. eLife. 2020, Nov 17; 9: pii: e63585.
  1. 13.   The viral protein U (Vpu)-interacting host protein ATP6V0C down-regulates cell-surface expression of tetherin and thereby contributes to HIV-1 release
  2. Waheed,Abdul; Swiderski, Maya; Khan, Ali; Gitzen, Ariana; Majadly, Ahlam; Freed,Eric
  3. The Journal of Biological Chemistry. 2020, MAY 22; 295(21): 7327-7340.
  1. 14.   Dynamic Emergence of Mismatch Repair Deficiency Facilitates Rapid Evolution of Ceftazidime-Avibactam Resistance in Pseudomonas aeruginosa Acute Infection
  2. Khil, Pavel P; Dulanto Chiang, Augusto; Ho, Jonathan; Youn, Jung-Ho; Lemon, Jamie K; Gea-Banacloche, Juan; Frank, Karen M; Parta,Mark; Bonomo, Robert A; Dekker, John P
  3. mBio. 2019, Sep; 10(5): pii: e01822-19.
  1. 15.   Developments in integrative modeling with dynamical interfaces
  2. Ozdemir, E. Sila; Nussinov,Ruth; Gursoy, Attila; Keskin, Ozlem
  3. CURRENT OPINION IN STRUCTURAL BIOLOGY. 2019, Jun; 56: 11-17.
  1. 16.   Review: Precision medicine and driver mutations: Computational methods, functional assays and conformational principles for interpreting cancer drivers
  2. Nussinov,Ruth; Jang,Hyunbum; Tsai,Chung-Jung; Cheng, Feixiong
  3. PLoS computational biology. 2019, Mar; 15(3):
  1. 17.   Deducing putative ancestral forms of GNRA/receptor interactions from the ribosome
  2. Calkins, Erin R.; Zakrevsky,Paul; Keleshian, Vasken L.; Aguilar, Eduardo G.; Geary, Cody; Jaeger, Luc
  3. NUCLEIC ACIDS RESEARCH. 2019, Jan 10; 47(1): 480-494.
  1. 18.   Enterotoxigenic Escherichia coli-blood group A interactions intensify diarrheal severity
  2. Kumar, Pardeep; Kuhlmann, F. Matthew; Chakraborty, Subhra; Bourgeois, A. Louis; Foulke-Abel, Jennifer; Tumala, Brunda; Vickers, Tim J.; Sack, David A.; DeNearing, Barbara; Harro, Clayton D.; Wright, W. Shea; Gildersleeve, Jeffrey; Ciorba, Matthew A.; Santhanam, Srikanth; Porter, Chad K.; Gutierrez, Ramiro L.; Prouty, Michael G.; Riddle, Mark S.; Polino, Alexander; Sheikh, Alaullah; Donowitz, Mark; Fleckenstein, James M.
  3. JOURNAL OF CLINICAL INVESTIGATION. 2018, Aug 1; 128(8): 3298-3311.
  1. 19.   Biophysical and biological evaluation of optimized stapled peptide inhibitors of the linear ubiquitin chain assembly complex (LUBAC)
  2. Aguilar Alonso, Francisco; Whiting, Amanda L.; Kim, Ye Joon; Bernal, Federico
  3. BIOORGANIC & MEDICINAL CHEMISTRY. 2018, Mar 15; 26(6): 1179-1188.
  1. 20.   Prediction of Host-Pathogen Interactions for Helicobacter pylori by Interface Mimicry and Implications to Gastric Cancer
  2. Guven-Maiorov, Emine; Tsai, Chung-Jung; Ma, Buyong; Nussinov, Ruth
  3. Journal of molecular biology. 2017, Dec 8; 429(24): 3925-3941.
  1. 21.   Cryo-EM Structures Reveal Mechanism and Inhibition of DNA Targeting by a CRISPR-Cas Surveillance Complex
  2. Guo, Tai Wei; Bartesaghi, Alberto; Yang, Hui; Falconieri, Veronica; Rao, Prashant; Merk, Alan; Eng, Edward T; Raczkowski, Ashleigh M; Fox, Tara; Earl, Lesley A; Patel, Dinshaw J; Subramaniam, Sriram
  3. Cell. 2017, Oct 05; 171(2): 414-426.e12.
  1. 22.   A New Mixed All-Atom/Coarse-Grained Model: Application to Melittin Aggregation in Aqueous Solution
  2. Shelley, Mee Y.; SeIvan, Myvizhi Esai; Zhao, Jun; Babin, Volodymyr; Liao, Chenyi; Li, Jianing; Shelley, John C.
  3. JOURNAL OF CHEMICAL THEORY AND COMPUTATION. 2017, Aug; 13(8): 3881-3897.
  1. 23.   The DnaK Chaperone Uses Different Mechanisms To Promote and Inhibit Replication of Vibrio cholerae Chromosome 2
  2. Jha, Jyoti K; Li, Mi; Ghirlando, Rodolfo; Miller Jenkins, Lisa M; Wlodawer, Alexander; Chattoraj, Dhruba
  3. mBio. 2017, Apr 18; 8(2):
  1. 24.   Crystal Structure of a Complex of the Intracellular Domain of Interferon lambda Receptor 1 (IFNLR1) and the FERM/SH2 Domains of Human JAK1
  2. Zhang, D.; Wlodawer, A.; Lubkowski, J.
  3. Journal of Molecular Biology. 2016, 2016-11-20; 428(23): 4651-4668.
  1. 25.   How do dynamic cellular signals travel long distances?
  2. Nussinov, R.
  3. Molecular Biosystems. 2012, Jan 1; 8(1): 22-26.
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