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  1. 1.   ERK Allosteric Activation: The Importance of Two Ordered Phosphorylation Events
  2. Regev,Clil; Jang,Hyunbum; Nussinov,Ruth
  3. Journal of Molecular Biology. 2025, Apr 09; 169130.
  1. 2.   Modeling and Analysis of HIV-1 Pol Polyprotein as a Case Study for Predicting Large Polyprotein Structures
  2. Hao,Ming; Imamichi,Tomozumi; Chang,Weizhong
  3. International Journal of Molecular Sciences. 2024, Feb 02; 25(3):
  1. 3.   The P-Site Loop of the Universally Conserved Bacterial Ribosomal Protein L5 Is Required for Maintaining Both Translation Rate and Fidelity
  2. Bubunenko,Mikhail; Korepanov, Alexey P
  3. International Journal of Molecular Sciences. 2023, Sep 19; 24(18):
  1. 4.   Evolution of Thyroglobulin Loop Kinetics in EpCAM
  2. Chen, Serena H.; Bell,David
  3. LIFE-BASEL. 2021, Sep 03; 11(9):
  1. 5.   Phase-dependent transcranial magnetic stimulation of the lesioned hemisphere is accurate after stroke
  2. Hussain, Sara J; Hayward, William; Fourcand, Farah; Zrenner, Christoph; Ziemann, Ulf; Buch, Ethan R; Hayward, Margaret K; Cohen, Leonardo G
  3. Brain stimulation. 2020, SEP-OCT; 13(5): 1354-1357.
  1. 6.   Ligand accessibility to the HIV-1 Env co-receptor binding site can occur prior to CD4 engagement and is independent of viral tier category
  2. Boliar, Saikat; Patil, Shilpa; Shukla, Brihaspati N; Ghobbeh, Ali; Deshpande, Suprit; Chen, Weizao; Guenaga, Javier; Dimitrov, Dimiter S; Wyatt, Richard T; Chakrabarti, Bimal K
  3. Virology. 2018, Jun; 519: 99-105.
  1. 7.   Blind prediction of noncanonical RNA structure at atomic accuracy
  2. Watkins, Andrew M.; Geniesse, Caleb; Kladwang, Wipapat; Zakrevsky, Paul; Jaeger, Luc; Das, Rhiju
  3. Science Advances. 2018, May 25; 4(5): eaar5316.
  1. 8.   Structure of the yeast U2/U6 snRNA complex
  2. Burke, J. E.; Sashital, D. G.; Zuo, X. B.; Wang, Y. X.; Butcher, S. E.
  3. Rna-a Publication of the Rna Society. 2012, Apr; 18(4): 673-683.
  1. 9.   Multistrand RNA Secondary Structure Prediction and Nanostructure Design Including Pseudoknots
  2. Bindewald, E.; Afonin, K.; Jaeger, L.; Shapiro, B. A.
  3. Acs Nano. 2011, Dec; 5(12): 9542-9551.
  1. 10.   RNA Folding in Transcription Elongation Complex IMPLICATION FOR TRANSCRIPTION TERMINATION
  2. Lubkowska, L.; Maharjan, A. S.; Komissarova, N.
  3. Journal of Biological Chemistry. 2011, Sep; 286(36): 31576-31585.
  1. 11.   SHAPE analysis of the FIV Leader RNA reveals a structural switch potentially controlling viral packaging and genome dimerization
  2. Kenyon, J. C.; Tanner, S. J.; Legiewicz, M.; Phillip, P. S.; Rizvi, T. A.; Le Grice, S. F. J.; Lever, A. M. L.
  3. Nucleic Acids Research. 2011, Aug; 39(15): 6692-6704.
  1. 12.   Identification of Cis-Acting Elements in the 3 '-Untranslated Region of the Dengue Virus Type 2 RNA That Modulate Translation and Replication
  2. Manzano, M.; Reichert, E. D.; Polo, S.; Falgout, B.; Kasprzak, W.; Shapiro, B. A.; Padmanabhan, R.
  3. Journal of Biological Chemistry. 2011, Jun; 286(25): 22521-22534.
  1. 13.   Self-Assembling RNA Nanorings Based on RNAI/II Inverse Kissing Complexes
  2. Grabow, W. W.; Zakrevsky, P.; Afonin, K. A.; Chworos, A.; Shapiro, B. A.; Jaeger, L.
  3. Nano Letters. 2011, Feb; 11(2): 878-887.
  1. 14.   Novel Peptides Based on HIV-1 gp120 Sequence with Homology to Chemokines Inhibit HIV Infection in Cell Culture
  2. Chertov, O.; Zhang, N.; Chen, X.; Oppenheim, J. J.; Lubkowski, J.; McGrath, C.; Sowder, R. C.; Crise, B. J.; Malyguine, A.; Kutzler, M. A.; Steele, A. D.; Henderson, E. E.; Rogers, T. J.
  3. Plos One. 2011, Jan 11; 6(1): 10.
  1. 15.   Multivalent dendrimeric compounds containing carbohydrates expressed on immune cells inhibit infection by primary isolates of HIV-1
  2. Borges, A. R.; Wieczorek, L.; Johnson, B.; Benesi, A. J.; Brown, B. K.; Kensinger, R. D.; Krebs, F. C.; Wigdahl, B.; Blumenthal, R.; Puri, A.; McCutchan, F. E.; Birx, D. L.; Polonis, V. R.; Schengrund, C. L.
  3. Virology. 2010, Dec; 408(1): 80-88.
  1. 16.   The RNA Transport Element of the Murine musD Retrotransposon Requires Long-range Intramolecular Interactions for Function
  2. Legiewicz, M.; Zolotukhin, A. S.; Pilkington, G. R.; Purzycka, K. J.; Mitchell, M.; Uranishi, H.; Bear, J.; Pavlakis, G. N.; Le Grice, S. F. J.; Felber, B. K.
  3. Journal of Biological Chemistry. 2010, Dec; 285(53): 42097-42104.
  1. 17.   Rapid global structure determination of large RNA and RNA complexes using NMR and small-angle X-ray scattering
  2. Wang, Y. X.; Zuo, X. B.; Wang, J. B.; Yu, P.; Butcher, S. E.
  3. Methods. 2010, Oct; 52(2): 180-191.
  1. 18.   Repression of Id2 expression by Gfi-1 is required for B-cell and myeloid development
  2. Li, H. J.; Ji, M.; Klarmann, K. D.; Keller, J. R.
  3. Blood. 2010, Aug 19; 116(7): 1060-1069.
  1. 19.   Conformational coupling, bridge helix dynamics and active site dehydration in catalysis by RNA polymerase
  2. Seibold, S. A.; Singh, B. N.; Zhang, C. F.; Kireeva, M.; Domecq, C.; Bouchard, A.; Nazione, A. M.; Feig, M.; Cukier, R. I.; Coulombe, B.; Kashlev, M.; Hampsey, M.; Burton, Z. F.
  3. Biochimica Et Biophysica Acta-Gene Regulatory Mechanisms. 2010, Aug; 1799(8): 575-587.
  1. 20.   Delineation of the Preferences and Requirements of the Human Immunodeficiency Virus Type 1 Dimerization Initiation Signal by Using an In Vivo Cell-Based Selection Approach
  2. Hussein, I. T. M.; Ni, N.; Galli, A.; Chen, J. B.; Moore, M. D.; Hu, W. S.
  3. Journal of Virology. 2010, Jul; 84(13): 6866-6875.
  1. 21.   Vang-like protein 2 and Rac1 interact to regulate adherens junctions
  2. Lindqvist, M.; Horn, Z.; Bryja, V.; Schulte, G.; Papachristou, P.; Ajima, R.; Dyberg, C.; Arenas, E.; Yamaguchi, T. P.; Lagercrantz, H.; Ringstedt, T.
  3. Journal of Cell Science. 2010, Feb; 123(3): 472-483.
  1. 22.   Limb Development Takes a Measured Step Toward Systems Analysis
  2. Mackem, S.; Lewandoski, M.
  3. Science Signaling. 2009, May; 2(71): 4.
  1. 23.   Mechanism of sequence-specific pausing of bacterial RNA polymerase
  2. Kireeva, M. L.; Kashlev, M.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2009 106(22): 8900-8905.
  1. 24.   Endothelial monocyte activating polypeptide-II modulates endothelial cell responses by degrading hypoxia-inducible factor-1alpha through interaction with PSMA7, a component of the proteasome
  2. Tandle, A. T.; Calvani, M.; Uranchimeg, B.; Zahavi, D.; Melillo, G.; Libutti, S. K.
  3. Experimental Cell Research. 2009 315(11): 1850-1859.
  1. 25.   LIM homeobox transcription factors integrate signaling events that control three-dimensional limb patterning and growth
  2. Tzchori, I.; Day, T. F.; Carolan, P. J.; Zhao, Y.; Wassif, C. A.; Li, L.; Lewandoski, M.; Gorivodsky, M.; Love, P. E.; Porter, F. D.; Westphal, H.; Yang, Y.
  3. Development. 2009 136(8): 1375-1385.
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