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  1. 1.   Relative domain orientation of the L289K HIV-1 reverse transcriptase monomer
  2. Xi, Zhaoyong; Ilina, Tatiana V; Guerrero, Michel; Fan,Lixin; Sluis-Cremer, Nicolas; Wang,Yun-Xing; Ishima, Rieko
  3. Protein Science : a publication of the Protein Society. 2022, May; 31(5): e4307.
  1. 2.   nightshift: A Python program for plotting simulated NMR spectra from assigned chemical shifts from the Biological Magnetic Resonance Data Bank
  2. Fucci,Ian; Byrd,Robert
  3. Protein Science. 2021, Sep 13;
  1. 3.   Magnetic Resonance Imaging-Targeted and Systematic Biopsy for Detection of Grade Progression in Patients on Active Surveillance for Prostate Cancer
  2. Yerram, Nitin K.; Long, Lori; O'Connor, Luke P.; Wang, Alex Z.; Ahdoot, Michael; Lebastchi, Amir H.; Gurram, Sandeep; Zeng, Johnathan; Chalfin, Heather; Harmon,Stephanie; Mehralivand, Sherif; Merino, Maria J.; Parnes, Howard L.; Choyke, Peter L.; Shih, Joanna; Wood, Bradford J.; Turkbey, Baris; Pinto, Peter A.
  3. The Journal of Urology. 2021, May; 205(5): 1352-1358.
  1. 4.   Changes in Magnetic Resonance Imaging Using the Prostate Cancer Radiologic Estimation of Change in Sequential Evaluation Criteria to Detect Prostate Cancer Progression for Men on Active Surveillance
  2. O'Connor, Luke P; Wang, Alex Z; Yerram, Nitin K; Long, Lori; Ahdoot, Michael; Lebastchi, Amir H; Gurram, Sandeep; Zeng, Johnathan; Harmon,Stephanie; Mehralivand, Sherif; Merino, Maria J; Parnes, Howard L; Choyke, Peter L; Shih, Joanna H; Wood, Bradford J; Turkbey, Baris; Pinto, Peter A
  3. European Urology Oncology. 2021, Apr ; 4(2): 227-234.
  1. 5.   An Unusual Pattern of Premature Cervical Spine Degeneration in STAT3-LOF
  2. Mitchell, Amelia L.; Urban,Amanda; Freeman, Alexandra F.; Hammoud, Dima A.
  3. Journal of clinical immunology. 2021, Apr; 41(3): 576-584.
  1. 6.   PIRADS Category as a Predictor of Progression to Unfavorable Risk Prostate Cancer in Men on Active Surveillance
  2. Wang, Alex Z; O'Connor, Luke P; Yerram, Nitin K; Long, Lori; Zeng, Johnathan; Mehralivand, Sherif; Harmon,Stephanie; Lebastchi, Amir H; Ahdoot, Michael; Gomella, Patrick T; Gurram, Sandeep; Choyke, Peter L; Merino, Maria J; Shih, Joanna H; Wood, Bradford J; Turkbey, Baris; Pinto, Peter A
  3. The Journal of urology. 2020, DEC; 204(6): 1229-1234.
  1. 7.   Uncovering a membrane-distal conformation of KRAS available to recruit RAF to the plasma membrane
  2. Van,Que; López, Cesar A; Tonelli, Marco; Taylor,Troy; Niu, Ben; Stanley, Christopher B; Bhowmik, Debsindhu; Tran,Tim; Frank,Peter; Messing,Simon; Alexander,Patrick; Scott, Daniel; Ye, Xiaoying; Drew,Matt; Chertov,Oleg; Lösche, Mathias; Ramanathan, Arvind; Gross, Michael L; Hengartner, Nicolas W; Westler, William M; Markley, John L; Simanshu,Dhirendra; Nissley,Dwight; Gillette, William K; Esposito,Dom; McCormick, Frank; Gnanakaran, S; Heinrich, Frank; Stephen, Andrew G
  3. Proceedings of the National Academy of Sciences of the United States of America. 2020, SEP 29; 117(39): 24258-24268.
  1. 8.   A terminal alpha 3-galactose modification regulates an E3 ubiquitin ligase subunit in Toxoplasma gondii
  2. Mandalasi, Msano; Kim, Hyun W.; Thieker, David; Sheikh, M. Osman; Gas-Pascual, Elisabet; Rahman,Kazi; Zhao, Peng; Daniel, Nitin G.; van der Wel, Hanke; Ichikawa, H. Travis; Glushka, John N.; Wells, Lance; Woods, Robert J.; Wood, Zachary A.; West, Christopher M.
  3. JOURNAL OF BIOLOGICAL CHEMISTRY. 2020, JUL 3; 295(27): 9223-9243.
  1. 9.   The Use of Large-Particle Aerosol Exposure to Nipah Virus to Mimic Human Neurological Disease Manifestations in the African Green Monkey
  2. Lee, Ji Hyun; Hammoud, Dima A; Cong, Yu; Huzella, Louis M; Castro, Marcelo A; Solomon,Jeffrey; Laux, Joseph; Lackemeyer, Matthew; Bohannon, J Kyle; Rojas, Oscar; Byrum, Russ; Adams, Ricky; Ragland, Danny; St Claire, Marisa; Munster, Vincent; Holbrook, Michael R
  3. The Journal of infectious diseases. 2020, MAY 1; 221(Supp. 4): S419-S430.
  1. 10.   LC-MS/MS assay coupled with carboxylic acid magnetic bead affinity capture to quantitatively measure cationic host defense peptides (HDPs) in complex matrices with application to preclinical pharmacokinetic studies
  2. O'Neill,Maura; Chan,King; Jaynes, Jesse M; Knotts, Zachary; Xu,Xia; Abisoye-Ogunniyan, Abisola; Guerin,Theresa; Schlomer,Jerome; Li, Dandan; Cary, Jeffrey W; Rajasekaran, Kanniah; Yates, Clayton; Kozlov,Serguei; Andresson,Thorkell; Rudloff, Udo
  3. Journal of pharmaceutical and biomedical analysis. 2020, Mar 20; 181: 113093.
  1. 11.   Dynamic Imaging of LDH Inhibition in Tumors Reveals Rapid In Vivo Metabolic Rewiring and Vulnerability to Combination Therapy
  2. Oshima, Nobu; Ishida, Ryo; Kishimoto, Shun; Beebe, Kristin; Brender, Jeffrey R; Yamamoto, Kazutoshi; Urban, Daniel; Rai, Ganesha; Johnson, Michelle S; Benavides, Gloria; Squadrito, Giuseppe L; Crooks, Dan; Jackson, Joseph; Joshi, Abhinav; Mott, Bryan T; Shrimp, Jonathan H; Moses, Michael A; Lee, Min-Jung; Yuno, Akira; Lee, Tobie D; Hu, Xin; Anderson, Tamara; Kusewitt, Donna; Hathaway, Helen H; Jadhav, Ajit; Picard, Didier; Trepel, Jane B; Mitchell, James B; Stott,Gordon; Moore,Bill; Simeonov, Anton; Sklar, Larry A; Norenberg, Jeffrey P; Linehan, W Marston; Maloney, David J; Dang, Chi V; Waterson, Alex G; Hall, Matthew; Darley-Usmar, Victor M; Krishna, Murali C; Neckers, Leonard M
  3. Cell reports. 2020, Feb 11; 30(6): 1798-1810.e4.
  1. 12.   Fast and accurate brain T-2 relaxation time quantification in animal models calibrated using gel phantoms and in vivo data suitable for imaging at a biosafety level 4 environment
  2. Castro, Marcelo A.; Laux, Joseph; Friel, Harry; Solomon,Jeffrey; Byrum, Russell; Rojas, Oscar; Thomasson, David; Bollinger, Laura; Hammoud, Dima; Lee, Ji Hyun
  3. MEDICAL IMAGING 2020: PHYSICS OF MEDICAL IMAGING. 2020, 11312 1131233.
  1. 13.   A multiparametric magnetic resonance imaging-based virtual reality surgical navigation tool for robotic-assisted radical prostatectomy
  2. Mehralivand, Sherif; Kolagunda, Abhishek; Hammerich, Kai; Sabarwal, Vikram; Harmon,Stephanie; Sanford, Thomas; Gold, Samuel; Hale, Graham; Romero, Vladimir Valera; Bloom, Jonathan; Merino, Maria J; Wood, Bradford J; Kambhamettu, Chandra; Choyke, Peter L; Pinto, Peter A; Türkbey, Baris
  3. Turkish journal of urology. 2019, Sep 01; 45(5): 357-365.
  1. 14.   Structural basis and mechanism of the unfolding-induced activation of HdeA, a bacterial acid response chaperone
  2. Yu, Xing-Chi; Hu, Yunfei; Ding, Jienv; Li, Hongwei; Jin, Changwen
  3. JOURNAL OF BIOLOGICAL CHEMISTRY. 2019, Mar 1; 294(9): 3192-3206.
  1. 15.   Peptide-MHC (pMHC) binding to a human antiviral T cell receptor induces long-range allosteric communication between pMHC- and CD3-binding sites
  2. Rangarajan, Sneha; He, Yanan; Chen, Yihong; Kerzic, Melissa C.; Ma,Buyong; Gowthaman, Ragul; Pierce, Brian G.; Nussinov,Ruth; Mariuzza, Roy A.; Orban, John
  3. JOURNAL OF BIOLOGICAL CHEMISTRY. 2018, Oct 12; 293(41): 15991-16005.
  1. 16.   PROSTATEx Challenges for computerized classification of prostate lesions from multiparametric magnetic resonance images
  2. Armato, Samuel G; Huisman, Henkjan; Drukker, Karen; Hadjiiski, Lubomir; Kirby, Justin; Petrick, Nicholas; Redmond, George; Giger, Maryellen L; Cha, Kenny; Mamonov, Artem; Kalpathy-Cramer, Jayashree; Farahani, Keyvan
  3. Journal of medical imaging (Bellingham, Wash.). 2018, Oct; 5(4): 044501.
  1. 17.   Cholecystokinin Receptor-Targeted Polyplex Nanoparticle Inhibits Growth and Metastasis of Pancreatic Cancer
  2. Burks, Julian; Nadella, Sandeep; Mahmud, Abdullah; Mankongpaisarnrung, Charoen; Wang, Juan; Hahm, Jong-In; Tucker, Robin D; Shivapurkar, Narayan; Stern, Steve; Smith, Jill P
  3. Cellular and Molecular Gastroenterology and Hepatology. 2018, Mar 07; 6(1): 17-32.
  1. 18.   Conformational dynamics of the TTD-PHD histone reader module of the UHRF1 epigenetic regulator reveals multiple histone-binding states, allosteric regulation, and druggability
  2. Houliston, R Scott; Lemak, Alexander; Iqbal, Aman; Ivanochko, Danton; Duan, Shili; Kaustov, Lilia; Ong, Michelle S; Fan, Lixin; Senisterra, Guillermo; Brown, Peter J; Wang, Yun-Xing; Arrowsmith, Cheryl H
  3. Journal of Biological Chemistry. 2017, Dec 22; 292(51): 20947-20959.
  1. 19.   Flexible-Body Motions of Calmodulin and the Farnesylated Hypervariable Region Yield a High-Affinity Interaction Enabling K-Ras4B Membrane Extraction.
  2. Jang, Hyunbum; Banerjee, Avik; Chavan, Tanmay; Gaponenko, Vadim; Nussinov, Ruth
  3. The Journal of biological chemistry. 2017, Jul 28; 292(30): 12544-12559.
  1. 20.   MR and optical imaging of early micrometastases in lymph nodes: triple labeling with nano-sized agents yielding distinct signals
  2. Kosaka, N.; Bernardo, M.; Mitsunaga, M.; Choyke, P. L.; Kobayashi, H.
  3. Contrast Media & Molecular Imaging. 2012, Mar; 7(2): 247-253.
  1. 21.   MRI of localized prostate cancer: coming of age in the PSA era
  2. Turkbey, B.; Bernardo, M.; Merino, M. J.; Wood, B. J.; Pinto, P. A.; Choyke, P. L.
  3. Diagnostic and Interventional Radiology. 2012, Jan-Feb; 18(1): 34-45.
  1. 22.   Trafficking of a Dual-Modality Magnetic Resonance and Fluorescence Imaging Superparamagnetic Iron Oxide-Based Nanoprobe to Lymph Nodes
  2. Bumb, A.; Regino, C. A. S.; Egen, J. G.; Bernardo, M.; Dobson, P. J.; Germain, R. N.; Choyke, P. L.; Brechbiel, M. W.
  3. Molecular Imaging and Biology. 2011, Dec; 13(6): 1163-1172.
  1. 23.   An NMR strategy for fragment-based ligand screening utilizing a paramagnetic lanthanide probe
  2. Saio, T.; Ogura, K.; Shimizu, K.; Yokochi, M.; Burke, T. R.; Inagaki, F.
  3. Journal of Biomolecular Nmr. 2011, Nov; 51(3): 395-408.
  1. 24.   Multiparametric 3T Prostate Magnetic Resonance Imaging to Detect Cancer: Histopathological Correlation Using Prostatectomy Specimens Processed in Customized Magnetic Resonance Imaging Based Molds
  2. Turkbey, B.; Mani, H.; Shah, V.; Rastinehad, A. R.; Bernardo, M.; Pohida, T.; Pang, Y. X.; Daar, D.; Benjamin, C.; McKinney, Y. L.; Trivedi, H.; Chua, C.; Bratslavsky, G.; Shih, J. H.; Linehan, W. M.; Merino, M. J.; Choyke, P. L.; Pinto, P. A.
  3. Journal of Urology. 2011, Nov; 186(5): 1818-1824.
  1. 25.   Polymorphic Triple beta-Sheet Structures Contribute to Amide Hydrogen/Deuterium (H/D) Exchange Protection in the Alzheimer Amyloid beta 42 Peptide
  2. Ma, B. Y.; Nussinov, R.
  3. Journal of Biological Chemistry. 2011, Sep; 286(39): 34244-34253.
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