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  1. 1.   What Markov State Models Can and Cannot Do: Correlation versus Path-Based Observables in Protein-Folding Models
  2. Suarez Alvarez,Ernesto; Wiewiora, Rafal P.; Wehmeyer, Chris; Noe, Frank; Chodera, John D.; Zuckerman, Daniel M.
  3. Journal of chemical theory and computation. 2021, May 11; 17(5): 3119-3133.
  1. 2.   Structural determinants of tobacco vein mottling virus protease substrate specificity
  2. Sun, P.; Austin, B. P.; Tozser, J.; Waugh, D. S.
  3. Protein Science. 2010, Nov; 19(11): 2240-2251.
  1. 3.   Periodicity, planarity, and pixel (3P): A program using the intrinsic residual dipolar coupling periodicity-to-peptide plane correlation and phi/psi angles to derive protein backbone structures
  2. Wang, J.; Walsh, J. D.; Kuszewski, J.; Wang, Y. X.
  3. Journal of Magnetic Resonance. 2007, Nov; 189(1): 90-103.
  1. 4.   Data mining of NCI's anticancer screening database reveals mitochondrial complex I inhibitors cytotoxic to leukemia cell lines
  2. Glover, C. J.; Rabow, A. A.; Isgor, Y. G.; Shoemaker, R. H.; Covell, D. G.
  3. Biochemical Pharmacology. 2007, Feb; 73(3): 331-340.
  1. 5.   EMatch: Discovery of high resolution structural homologues of protein domains in intermediate resolution cryo-EM maps
  2. Lasker, K.; Dror, O.; Shatsky, M.; Nussinov, R.; Wolfson, H. J.
  3. Ieee-Acm Transactions on Computational Biology and Bioinformatics. 2007, Jan-Mar; 4(1): 28-39.
  1. 6.   EMatch: an efficient method for aligning atomic resolution subunits into intermediate-resolution cryo-EM maps of large macromolecular assemblies
  2. Dror, O.; Lasker, K.; Nussinov, R.; Wolfson, H.
  3. Acta Crystallographica Section D-Biological Crystallography. 2007, Jan; 63: 42-49.
  1. 7.   Chromosome painting in the manatee supports Afrotheria and Paenungulata
  2. Kellogg, M. E.; Burkett, S.; Dennis, T. R.; Stone, G.; Gray, B. A.; McGuire, P. M.; Zori, R. T.; Stanyon, R.
  3. Bmc Evolutionary Biology. 2007, Jan; 7
  1. 8.   Molecular replacement with pseudosymmetry and model dissimilarity: a case study
  2. Jaskolski, M.; Li, M.; Laco, G.; Gustchina, A.; Wlodawer, A.
  3. Acta Crystallographica Section D-Biological Crystallography. 2006, FEB; 62(Part 2): 208-215.
  1. 9.   Molecular architecture and ligand recognition determinants for T4 RNA ligase
  2. El Omari, K.; Ren, J.; Bird, L. E.; Bona, M. K.; Klarmann, G.; Legrice, S. F. J.; Stammers, D. K.
  3. Journal of Biological Chemistry. 2006, JAN 20; 281(3): 1573-1579.
  1. 10.   A novel RING-type ubiquitin ligase breast cancer-associated gene 2 correlates with outcome in invasive breast cancer
  2. Burger, A. M.; Gao, Y. G.; Amemiya, Y.; Kahn, H. J.; Kitching, R.; Yang, Y. L.; Sun, P.; Narod, S. A.; Hanna, W. M.; Seth, A. K.
  3. Cancer Research. 2005, NOV 15; 65(22): 10401-10412.
  1. 11.   The case for selection at CCR5-Delta 32
  2. Sabeti, P. C.; Walsh, E.; Schaffner, S. F.; Varilly, P.; Fry, B.; Hutcheson, H. B.; Cullen, M.; Mikkelsen, T. S.; Roy, J.; Patterson, N.; Cooper, R.; Reich, D.; Altshuler, D.; O'Brien, S.; Lander, E. S.
  3. Plos Biology. 2005, NOV; 3(11): 1963-1969.
  1. 12.   Determining a helical protein structure using peptide pixels
  2. Walsh, J. D.; Kuszweski, J.; Wang, Y. X.
  3. Journal of Magnetic Resonance. 2005, NOV; 177(1): 155-159.
  1. 13.   Periodicity, planarity, residual dipolar coupling, and structures
  2. Walsh, J. D.; Wang, Y. X.
  3. Journal of Magnetic Resonance. 2005, MAY; 174(1): 152-162.
  1. 14.   The linkage disequilibrium maps of three human chromosomes across four populations reflect their demographic history and a common underlying recombination pattern
  2. De La Vega, F. M.; Isaac, H.; Collins, A.; Scafe, C. R.; Halldorsson, B. V.; Su, X. P.; Lippert, R. A.; Wang, Y.; Laig-Webster, M.; Koehler, R. T.; Ziegle, J. S.; Wogan, L. T.; Stevens, J. F.; Leinen, K. M.; Olson, S. J.; Guegler, K. J.; You, X. Q.; Xu, L. H.; Hemken, H. G.; Kalush, F.; Itakura, M.; Zheng, Y.; de The, G.; O'Brien, S. J.; Clark, A. G.; Istrail, S.; Hunkapiller, M. W.; Spier, E. G.; Gilbert, D. A.
  3. Genome Research. 2005, APR; 15(4): 454-462.
  1. 15.   Inherited motor neuron disease in domestic cats: A model of spinal muscular atrophy
  2. He, Q. C.; Lowrie, C.; Shelton, G. D.; Castellani, R. J.; Menotti-Raymond, M.; Murphy, W.; O'Brien, S. J.; Swanson, W. F.; Fyee, J. C.
  3. Pediatric Research. 2005, MAR; 57(3): 324-330.
  1. 16.   Discovery of protein substructures in EM maps
  2. Lasker, K.; Dror, O.; Nussinov, R.; Wolfson, H.
  3. Algorithms in bioinformatics. 2005; 3692 : 423-434.
  1. 17.   Multi-directional chromosome painting maps homologies between species belonging to three genera of New World monkeys and humans
  2. Stanyon, R.; Bigoni, F.; Slaby, T.; Muller, S.; Stone, G.; Bonvicino, C. R.; Neusser, M.; Seuanez, H. N.
  3. Chromosoma. 2004, DEC; 113(6): 305-315.
  1. 18.   A structural similarity analysis of double-helical DNA
  2. Gardiner, E. J.; Hunter, C. A.; Lu, X. J.; Willett, P.
  3. Journal of Molecular Biology. 2004, OCT 29; 343(4): 879-889.
  1. 19.   Looking for cancer clues in publicly accessible databases
  2. Medjahed, D.; Lemkin, P. F.; Smythers, G. W.; Munroe, D. J.
  3. Comparative and Functional Genomics. 2004 5(2): 196-200.
  1. 20.   A germ-line insertion in the Birt-Hogg-Dube (BHD) gene gives rise to the Nihon rat model of inherited renal cancer
  2. Okimoto, K.; Sakurai, J.; Kobayashi, T.; Mitani, H.; Hirayama, Y.; Nickerson, M. L.; Warren, M. B.; Zbar, B.; Schmidt, L. S.; Hino, O.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2004 101(7): 2023-2027.
  1. 21.   SMUCKLER/TIM4 is a distinct member of TIM family expressed by stromal cells of secondary lymphoid tissues and associated with lymphotoxin signaling
  2. Shakhov, A. N.; Rybtsov, S.; Tumanov, A. V.; Shulenin, S.; Dean, M.; Kuprash, D. V.; Nedospasov, S. A.
  3. European Journal of Immunology. 2004 34(2): 494-503.
  1. 22.   Genetic control of myreloproliferation in BXH-2 mice
  2. Turcotte, K.; Gauthier, S.; Mitsos, L. M.; Shustik, C.; Copeland, N. G.; Jenkins, N. A.; Fournet, J. C.; Jolicoeur, P.; Gros, P.
  3. Blood. 2004 103(6): 2343-2350.
  1. 23.   Periodicity in residual dipolar couplings and nucleic acid structures
  2. Walsh, J. D.; Cabello-Villegas, J.; Wang, Y. X.
  3. Journal of the American Chemical Society. 2004 126(7): 1938-1939.
  1. 24.   Ultrahigh resolution drug design I: Details of interactions in human aldose reductase-inhibitor complex at 0.66 angstrom
  2. Howard, E. I.; Sanishvili, R.; Cachau, R. E.; Mitschler, A.; Chevrier, B.; Barth, P.; Lamour, V.; Van Zandt, M.; Sibley, E.; Bon, C.; Moras, D.; Schneider, T. R.; Joachimiak, A.; Podjarny, A.
  3. Proteins-Structure Function and Bioinformatics. 2004 55(4): 792-804.
  1. 25.   Chromosome painting in the long-tailed field mouse provides insights into the ancestral murid karyotype
  2. Stanyon, R.; Yang, F.; Morescalchi, A. M.; Galleni, L.
  3. Cytogenetic and Genome Research. 2004 105(2-4): 406-411.
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