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  1. 1.   Affinity Tag-Free Purification of SARS-CoV-2 N Protein and Its Crystal Structure in Complex with ssDNA
  2. Maiti,Atanu; Matsuo,Hiroshi
  3. Biomolecules. 2024, Nov 30; 14(12):
  1. 2.   Two hearts beat as one: the debate over RAS dimers continues
  2. Stephen,Andy
  3. Trends in Biochemical Sciences. 2024, Nov; 49(11): 933-935.
  1. 3.   Glycemic Control in Diabetic Patients Improved Overall Lung Cancer Survival across Diverse Populations
  2. Wu, Yi-Hung; Luke,Brian; Wu, Xiao-Cheng; Lee, J Jack; Yi, Yong; Okpechi,Samuel; Gause,Barry; Mehta, Paras; Sherman, Steven I; Ochoa, Augusto; Dmitrovsky,Ethan; Liu,Xi
  3. JNCI Cancer Spectrum. 2024, Sep 12;
  1. 4.   Longitudinal analysis of the lung proteome reveals persistent repair months after mild to moderate COVID-19
  2. Kanth, Shreya M; Huapaya, Julio A; Gairhe, Salina; Wang, Honghui; Tian, Xin; Demirkale, Cumhur Y; Hou, Chunyan; Ma, Junfeng; Kuhns,Doug; Fink,Dani; Malayeri, Ashkan; Turkbey, Evrim; Harmon, Stephanie A; Chen, Marcus Y; Regenold, David; Lynch, Nicolas F; Ramelli, Sabrina; Li, Willy; Krack, Janell; Kuruppu, Janaki; Lionakis, Michail S; Strich, Jeffrey R; Davey, Richard; Childs, Richard; Chertow, Daniel S; Kovacs, Joseph A; Parizi, Parizad Torabi-; Suffredini, Anthony F
  3. Cell Reports. Medicine. 2024, Jul 16; 5(7): 101642.
  1. 5.   Mosaic quadrivalent influenza vaccine single nanoparticle characterization
  2. Yang, Rong Sylvie; Traver, Maria; Barefoot, Nathan; Stephens, Tyler; Alabanza, Casper; Manzella-Lapeira, Javier; Zou, Guozhang; Wolff, Jeremy; Li, Yile; Resto, Melissa; Shadrick, William; Yang, Yanhong; Ivleva, Vera B; Tsybovsky,Yaroslav; Carlton, Kevin; Brzostowski, Joseph; Gall, Jason G; Lei, Q Paula
  3. Scientific Reports. 2024, Feb 24; 14(1): 4534.
  1. 6.   Lessons learned: establishing a CLIA-equivalent laboratory for targeted mass spectrometry assays - navigating the transition from research to clinical practice
  2. Han, Chia-Li; Lai, Chi-Ting; Reyes, Aaron James; Yang, Hao-Chin; Lu, Jin-Ying; Shih, Shyang-Rong; Chen, Kuen-Yuan; Hoofnagle, Andrew N; Yu, Sung-Liang; Bocik, William; Hiltke, Tara; Chiu, Huan-Chi; Wan, Ching-Yi; Rodriguez, Henry; Zhang, Victoria; Chen, Yu-Ju
  3. Clinical Proteomics. 2024, Feb 22; 21(1): 12.
  1. 7.   A proteomic atlas of glypican-3 interacting partners: Identification of alpha-fetoprotein and other extracellular proteins as potential immunotherapy targets in liver cancer
  2. Zhang, Yi-Fan; Lin, Shaoli; Zhen, Xiao; Ho, Mitchell
  3. Proteoglycan Research. 2024, Oct-Dec; 2(4):
  1. 8.   SARS-CoV-2 papain-like protease (PLpro) plays multiple roles in regulating cellular proteins in the endoplasmic reticulum
  2. Yang,Mei; Mariano,Jennifer; Su, Rebecca; Smith, Christopher E; Das,Sudipto; Gill, Catherine; Andresson,Thorkell; Loncarek,Jadranka; Tsai,Yien Che; Weissman,Allan
  3. The Journal of Biological Chemistry. 2023, Dec; 299(12): 105346.
  1. 9.   Host, reproductive, and lifestyle factors in relation to quantitative histologic metrics of the normal breast
  2. Abubakar, Mustapha; Klein, Alyssa; Fan, Shaoqi; Lawrence,Scott; Mutreja,Karun; Henry, Jill E; Pfeiffer, Ruth M; Duggan, Maire A; Gierach, Gretchen L
  3. Breast Cancer Research : BCR. 2023, Aug 15; 25(1): 97.
  1. 10.   Pan-cancer analysis of post-translational modifications reveals shared patterns of protein regulation
  2. Geffen, Yifat; Anand, Shankara; Akiyama, Yo; Yaron, Tomer M; Song, Yizhe; Johnson, Jared L; Govindan, Akshay; Babur, Özgün; Li, Yize; Huntsman, Emily; Wang, Liang-Bo; Birger, Chet; Heiman, David I; Zhang, Qing; Miller, Mendy; Maruvka, Yosef E; Haradhvala, Nicholas J; Calinawan, Anna; Belkin, Saveliy; Kerelsky, Alexander; Clauser, Karl R; Krug, Karsten; Satpathy, Shankha; Payne, Samuel H; Mani, D R; Gillette, Michael A; Dhanasekaran, Saravana M; Thiagarajan,Mathangi; Mesri, Mehdi; Rodriguez, Henry; Robles, Ana I; Carr, Steven A; Lazar, Alexander J; Aguet, François; Cantley, Lewis C; Ding, Li; Getz, Gad
  3. Cell. 2023, Aug 09;
  1. 11.   Neoplastic cell enrichment of tumor tissues using coring and laser microdissection for proteomic and genomic analyses of pancreatic ductal adenocarcinoma
  2. Li, Qing Kay; Hu, Yingwei; Chen, Lijun; Schnaubelt, Michael; Cui Zhou, Daniel; Li, Yize; Lu, Rita Jui-Hsien; Thiagarajan,Mathangi; Hostetter, Galen; Newton, Chelsea J; Jewell, Scott D; Omenn, Gil; Robles, Ana I; Mesri, Mehdi; Bathe, Oliver F; Zhang, Bing; Ding, Li; Hruban, Ralph H; Chan, Daniel W; Zhang, Hui
  3. Clinical proteomics. 2022, Oct 20; 19(1): 36.
  1. 12.   Antiretroviral drug exposure in lymph nodes is heterogeneous and drug dependent
  2. Rosen, Elias P; Deleage,Claire; White, Nicole; Sykes, Craig; Edwards,Catherine; Adamson, Lourdes; Luciw, Paul; Estes, Jacob D; Kashuba, Angela D M
  3. Journal of the International AIDS Society. 2022, Apr; 25(4): e25895.
  1. 13.   Measured body size and serum estrogen metabolism in postmenopausal women: the Ghana Breast Health Study
  2. Geczik, Ashley M; Falk, Roni T; Xu,Xia; Ansong, Daniel; Yarney, Joel; Wiafe-Addai, Beatrice; Edusei, Lawrence; Dedey, Florence; Vanderpuye, Verna; Titiloye, Nicholas; Adjei, Ernest; Aitpillah, Francis; Osei-Bonsu, Ernest; Oppong, Joseph; Biritwum, Richard; Nyarko, Kofi; Wiafe, Seth; Awuah, Baffour; Clegg-Lamptey, Joe-Nat; Ahearn, Thomas U; Figueroa, Jonine; Garcia-Closas, Montserrat; Brinton, Louise A; Trabert, Britton
  3. Breast Cancer Research : BCR. 2022, Jan 26; 24(1):
  1. 14.   Machine learning-driven multiscale modeling reveals lipid-dependent dynamics of RAS signaling proteins
  2. Ingólfsson, Helgi I; Neale, Chris; Carpenter, Timothy S; Shrestha,Rebika; López, Cesar A; Tran, Timothy H; Oppelstrup, Tomas; Bhatia, Harsh; Stanton, Liam G; Zhang, Xiaohua; Sundram, Shiv; Di Natale, Francesco; Agarwal, Animesh; Dharuman, Gautham; Kokkila Schumacher, Sara I L; Turbyville,Tommy; Gulten, Gulcin; Van, Que N; Goswami, Debanjan; Jean-Francois, Frantz; Agamasu, Constance; Chen, De; Hettige, Jeevapani J; Travers, Timothy; Sarkar, Sumantra; Surh, Michael P; Yang, Yue; Moody, Adam; Liu, Shusen; Van Essen, Brian C; Voter, Arthur F; Ramanathan, Arvind; Hengartner, Nicolas W; Simanshu, Dhirendra K; Stephen, Andrew G; Bremer, Peer-Timo; Gnanakaran, S; Glosli, James N; Lightstone, Felice C; McCormick, Frank; Nissley, Dwight V; Streitz, Frederick H
  3. Proceedings of the National Academy of Sciences of the United States of America. 2022, Jan 04; 119(1):
  1. 15.   Huntingtin structure is orchestrated by HAP40 and shows a polyglutamine expansion-specific interaction with exon 1
  2. Harding, Rachel J.; Deme,Justin; Hevler, Johannes F.; Tamara, Sem; Lemak, Alexander; Cantle, Jeffrey P.; Szewczyk, Magdalena M.; Begeja, Nola; Goss, Siobhan; Zuo, Xiaobing; Loppnau, Peter; Seitova, Alma; Hutchinson, Ashley; Fan,Lixin; Truant, Ray; Schapira, Matthieu; Carroll, Jeffrey B.; Heck, Albert J. R.; Lea, Susan M.; Arrowsmith, Cheryl H.
  3. Communications Biology . 2021, Dec 8; 4(1):
  1. 16.   Targeted Mass Spectrometry Enables Multiplexed Quantification of Immunomodulatory Proteins in Clinical Biospecimens
  2. Whiteaker, Jeffrey R; Lundeen, Rachel A; Zhao, Lei; Schoenherr, Regine M; Burian, Aura; Huang, Dongqing; Voytovich, Ulianna; Wang, Tao; Kennedy, Jacob J; Ivey, Richard G; Lin, Chenwei; Murillo, Oscar D; Lorentzen, Travis D; Thiagarajan,Mathangi; Colantonio,Simona; Caceres,Tessa; Roberts,Rhonda; Knotts,Joseph; Reading,Joshua; Kaczmarczyk,Jan; Richardson, Christopher W; Garcia-Buntley,Stephanie; Bocik,William; Hewitt, Stephen M; Murray, Karen E; Do, Nhan; Brophy, Mary; Wilz, Stephen W; Yu, Hongbo; Ajjarapu, Samuel; Boja, Emily; Hiltke, Tara; Rodriguez, Henry; Paulovich, Amanda G
  3. Frontiers in immunology. 2021, Nov 11; 12
  1. 17.   Development and validation of an LC-MS/MS generic assay platform for small molecule drug bioanalysis
  2. Parise, Robert A; Covey, Joseph M; Hollingshead,Melinda; Srivastava,Apurva; Synold, Timothy W; Beumer, Jan H
  3. Journal of pharmaceutical and biomedical analysis. 2021, Sep 5; 203: 114185.
  1. 18.   Refining the N-Termini of the SARS-CoV-2 Spike Protein and Its Discrete Receptor-Binding Domain
  2. D'Ippolito,Robert; Drew,Matt; Mehalko,Jennifer; Snead,Kelly; Wall,Vanessa; Putman,Zoe; Esposito,Dom; Dehart,Caroline
  3. Journal of proteome research. 2021, Sep 3; 20: 4427-4434.
  1. 19.   A Molecular Networking Strategy: High-Throughput Screening and Chemical Analysis of Brazilian Cerrado Plant Extracts against Cancer Cells
  2. Cortelo, Patricia C.; Demarque, Daniel P.; Dusi, Renata G.; Albernaz, Lorena C.; Braz-Filho, Raimundo; Goncharova, Ekaterina I.; Bokesch, Heidi R.; Gustafson, Kirk R.; Beutler, John A.; Espindola, Laila S.
  3. Cells. 2021, Mar; 10(3):
  1. 20.   Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy
  2. Krug, Karsten; Jaehnig, Eric J; Satpathy, Shankha; Blumenberg, Lili; Karpova, Alla; Anurag, Meenakshi; Miles, George; Mertins, Philipp; Geffen, Yifat; Tang, Lauren C; Heiman, David I; Cao, Song; Maruvka, Yosef E; Lei, Jonathan T; Huang, Chen; Kothadia, Ramani B; Colaprico, Antonio; Birger, Chet; Wang, Jarey; Dou, Yongchao; Wen, Bo; Shi, Zhiao; Liao, Yuxing; Wiznerowicz, Maciej; Wyczalkowski, Matthew A; Chen, Xi Steven; Kennedy, Jacob J; Paulovich, Amanda G; Thiagarajan,Mathangi; Kinsinger, Christopher R; Hiltke, Tara; Boja, Emily S; Mesri, Mehdi; Robles, Ana I; Rodriguez, Henry; Westbrook, Thomas F; Ding, Li; Getz, Gad; Clauser, Karl R; Fenyö, David; Ruggles, Kelly V; Zhang, Bing; Mani, D R; Carr, Steven A; Ellis, Matthew J; Gillette, Michael A
  3. Cell. 2020, NOV 25; 183(5): 1436-+.
  1. 21.   HIV-1 Gag protein with or without p6 specifically dimerizes on the viral RNA packaging signal
  2. Sarni, Samantha; Biswas,Banhi; Liu, Shuohui; Olson, Erik D.; Kitzrow, Jonathan P.; Rein,Alan; Wysocki, Vicki H.; Musier-Forsyth, Karin
  3. JOURNAL OF BIOLOGICAL CHEMISTRY. 2020, OCT 16; 295(42): 14391-14401.
  1. 22.   Networks of HIV-1 Envelope Glycans Maintain Antibody Epitopes in the Face of Glycan Additions and Deletions
  2. Seabright, Gemma E; Cottrell, Christopher A; van Gils, Marit J; D'addabbo, Alessio; Harvey, David J; Behrens, Anna-Janina; Allen, Joel D; Watanabe, Yasunori; Scaringi, Nicole; Polveroni, Thomas M; Maker, Allison; Vasiljevic, Snezana; De Val Alda,Natalia; Sanders, Rogier W; Ward, Andrew B; Crispin, Max
  3. Structure (London, England : 1993). 2020, AUG 4; 28(8): 897-+.
  1. 23.   Metabolic Syndrome, Physical Activity, and Inflammation: A Cross-Sectional Analysis of 110 Circulating Biomarkers in Japanese Adults
  2. Van Alsten, Sarah C.; Rabkin, Charles S.; Sawada, Norie; Shimazu, Taichi; Charvat, Hadrien; Yamaji, Taiki; Inoue, Manami; Kemp,Troy; Pinto,Ligia; Camargo, M. Constanza; Tsugane, Shoichiro; Song, Minkyo
  3. CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION. 2020, AUG; 29(8): 1639-1646.
  1. 24.   Proteogenomic Characterization Reveals Therapeutic Vulnerabilities in Lung Adenocarcinoma
  2. Gillette, Michael A; Satpathy, Shankha; Cao, Song; Dhanasekaran, Saravana M; Vasaikar, Suhas V; Krug, Karsten; Petralia, Francesca; Li, Yize; Liang, Wen-Wei; Reva, Boris; Krek, Azra; Ji, Jiayi; Song, Xiaoyu; Liu, Wenke; Hong, Runyu; Yao, Lijun; Blumenberg, Lili; Savage, Sara R; Wendl, Michael C; Wen, Bo; Li, Kai; Tang, Lauren C; MacMullan, Melanie A; Avanessian, Shayan C; Kane, M Harry; Newton, Chelsea J; Cornwell, MacIntosh; Kothadia, Ramani B; Ma, Weiping; Yoo, Seungyeul; Mannan, Rahul; Vats, Pankaj; Kumar-Sinha, Chandan; Kawaler, Emily A; Omelchenko, Tatiana; Colaprico, Antonio; Geffen, Yifat; Maruvka, Yosef E; da Veiga Leprevost, Felipe; Wiznerowicz, Maciej; Gümüs, Zeynep H; Veluswamy, Rajwanth R; Hostetter, Galen; Heiman, David I; Wyczalkowski, Matthew A; Hiltke, Tara; Mesri, Mehdi; Kinsinger, Christopher R; Boja, Emily S; Omenn, Gilbert S; Chinnaiyan, Arul M; Rodriguez, Henry; Li, Qing Kay; Jewell, Scott D; Thiagarajan,Mathangi; Getz, Gad; Zhang, Bing; Fenyö, David; Ruggles, Kelly V; Cieslik, Marcin P; Robles, Ana I; Clauser, Karl R; Govindan, Ramaswamy; Wang, Pei; Nesvizhskii, Alexey I; Ding, Li; Mani, D R; Carr, Steven A
  3. Cell. 2020, Jul 09; 182(1): 200-225.e35.
  1. 25.   Homogeneous Oligomers of Pro-apoptotic BAX Reveal Structural Determinants of Mitochondrial Membrane Permeabilization
  2. Hauseman, Zachary J; Harvey, Edward P; Newman, Catherine E; Wales, Thomas E; Bucci, Joel C; Mintseris, Julian; Schweppe, Devin K; David, Liron; Fan,Lixin; Cohen, Daniel T; Herce, Henry D; Mourtada, Rida; Ben-Nun, Yael; Bloch, Noah B; Hansen, Scott B; Wu, Hao; Gygi, Steven P; Engen, John R; Walensky, Loren D
  3. Molecular cell. 2020, JUL 2; 79(1): 68-+.
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