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  1. 1.   A patient-derived cell model for malignant transformation in IDH-mutant glioma
  2. Kim, Olga; Sergi, Zach; Yu, Guangyang; Yamamoto, Kazutoshi; Quezado, Martha; Abdullaev, Zied; Crooks, Danel R; Kishimoto, Shun; Li, Qi; Lu, Peng; Blackman, Burchelle; Andresson,Thorkell; Wu,Xiaolin; Tran,Bao; Wei, Jun S; Zhang, Wei; Zhang, Meili; Song, Hua; Khan, Javed; Krishna, Murali C; Brender, Jeffrey R; Wu, Jing
  3. Acta Neuropathologica Communications. 2024, Sep 10; 12(1): 148.
  1. 2.   Comparison of somatic mutation landscapes in Chinese versus European breast cancer patients
  2. Zhu, Bin; Joo, Lijin; Zhang, Tongwu; Koka, Hela; Lee, DongHyuk; Shi, Jianxin; Lee, Priscilla; Wang, Difei; Wang, Feng; Chan, Wing-Cheong; Law, Sze Hong; Tsoi, Yee-Kei; Tse, Gary M; Lai, Shui Wun; Wu, Cherry; Yang, Shuyuan; Yang Chan, Emily Ying; Shan Wong, Samuel Yeung; Wang, Mingyi; Song, Lei; Jones, Kristine; Zhu, Bin; Hutchinson, Amy; Hicks, Belynda; Prokunina-Olsson, Ludmila; Garcia-Closas, Montserrat; Chanock, Stephen; Tse, Lap Ah; Yang, Xiaohong R
  3. HGG Advances. 2021, Dec 3; 3(1): 100076.
  1. 3.   Aligning Tumor Mutational Burden (TMB) quantification across diagnostic platforms: Phase 2 of the Friends of Cancer Research TMB Harmonization Project
  2. Vega, Diana Merino; Yee, Laura M; McShane, Lisa M; Williams,Mickey; Chen,Li; Vilimas, Tomas; Fabrizio, David; Funari, Vincent; Newberg, Justin; Bruce, Lauryn Keeler; Chen, Shu-Jen; Baden, Jonathan; Barrett, J Carl; Beer, Philip; Butler, Matthew; Cheng, Jen-Hao; Conroy, Jeffrey; Cyanam, Dinesh; Eyring, Kenneth; Garcia, Elizabeth; Green, George; Gregersen, Vivi Raundahl; Hellmann, Matthew D; Keefer, Laurel A; Lasiter, Laura; Lazar, Alexander J; Li, Ming-Chung; Macconaill, Laura E; Meier, Kristen; Mellert, Hestia; Pabla, Sarabjot; Pallavajjalla, Aparna; Pestano, Gary; Salgado, Roberto; Samara, Raed; Sokol, Ethan S; Stafford, Phillip; Budczies, Jan; Stenzinger, Albrecht; Tom, Warren; Valkenburg, Kenneth C; Wang, XiaoZhe; Weigman, Victor; Xie, Mingchao; Xie, Qian; Zehir, Ahmet; Zhao, Chen; Zhao, Yingdong; Stewart, Mark D; Allen, Jeff
  3. Annals of oncology : official journal of the European Society for Medical Oncology. 2021, Dec; 32(12): 1626-1636.
  1. 4.   Genomic and evolutionary classification of lung cancer in never smokers
  2. Zhang, Tongwu; Joubert, Philippe; Ansari-Pour, Naser; Zhao, Wei; Hoang, Phuc H.; Lokanga, Rachel; Moye, Aaron L.; Rosenbaum, Jennifer; Gonzalez-Perez, Abel; Martinez-Jimenez, Francisco; Castro, Andrea; Muscarella, Lucia Anna; Hofman, Paul; Consonni, Dario; Pesatori, Angela C.; Kebede, Michael; Li, Mengying; Rothberg, Bonnie E. Gould; Peneva, Iliana; Schabath, Matthew B.; Poeta, Maria Luana; Costantini, Manuela; Hirsch, Daniela; Heselmeyer-Haddad, Kerstin; Hutchinson,Amy; Olanich, Mary; Lawrence,Scott; Lenz,Petra; Duggan, Maire; Bhawsar, Praphulla M. S.; Sang, Jian; Kim, Jung; Mendoza, Laura; Saini, Natalie; Klimczak, Leszek J.; Islam, S. M. Ashiqul; Otlu, Burcak; Khandekar, Azhar; Cole,Nathan; Stewart, Douglas R.; Choi, Jiyeon; Brown, Kevin M.; Caporaso, Neil E.; Wilson, Samuel H.; Pommier, Yves; Lan, Qing; Rothman, Nathaniel; Almeida, Jonas S.; Carter, Hannah; Ried, Thomas; Kim, Carla F.; Lopez-Bigas, Nuria; Garcia-Closas, Montserrat; Shi, Jianxin; Bosse, Yohan; Zhu, Bin; Gordenin, Dmitry A.; Alexandrov, Ludmil B.; Chanock, Stephen J.; Wedge, David C.; Landi, Maria Teresa
  3. Nature genetics. 2021, Sep; 53(9): 1348-1359.
  1. 5.   Tracing Lung Cancer Risk Factors Through Mutational Signatures in Never-Smokers
  2. Landi, Maria Teresa; Synnott, Naoise C.; Rosenbaum, Jennifer; Zhang, Tongwu; Zhu, Bin; Shi, Jianxin; Zhao, Wei; Kebede, Michael; Sang, Jian; Choi, Jiyeon; Mendoza, Laura; Pacheco, Marwil; Hicks, Belynda; Caporaso, Neil E.; Abubakar, Mustapha; Gordenin, Dmitry A.; Wedge, David C.; Alexandrov, Ludmil B.; Rothman, Nathaniel; Lan, Qing; Garcia-Closas, Montserrat; Chanock, Stephen J.
  3. American Journal of Epidemiology. 2021, Jun; 190(6): 962-976.
  1. 6.   Prostate cancer evolution from multilineage primary to single lineage metastases with implications for liquid biopsy
  2. Woodcock, D J; Riabchenko, E; Taavitsainen, S; Kankainen, M; Gundem, G; Brewer, D S; Ellonen, P; Lepistö, M; Golubeva, Y A; Warner,Andrew; Tolonen, T; Jasu, J; Isaacs, W B; Emmert-Buck, M R; Nykter, M; Visakorpi, T; Bova, G S; Wedge, D C
  3. Nature communications. 2020, OCT 8; 11(1): 5070.
  1. 7.   Establishing guidelines to harmonize tumor mutational burden (TMB): in silico assessment of variation in TMB quantification across diagnostic platforms: phase I of the Friends of Cancer Research TMB Harmonization Project
  2. Merino, Diana M; McShane, Lisa M; Fabrizio, David; Funari, Vincent; Chen, Shu-Jen; White, James R; Wenz, Paul; Baden, Jonathan; Barrett, J Carl; Chaudhary, Ruchi; Chen,Li; Chen, Wangjuh Sting; Cheng, Jen-Hao; Cyanam, Dinesh; Dickey, Jennifer S; Gupta, Vikas; Hellmann, Matthew; Helman, Elena; Li, Yali; Maas, Joerg; Papin, Arnaud; Patidar,Rajesh; Quinn, Katie J; Rizvi, Naiyer; Tae, Hongseok; Ward, Christine; Xie, Mingchao; Zehir, Ahmet; Zhao, Chen; Dietel, Manfred; Stenzinger, Albrecht; Stewart, Mark; Allen, Jeff
  3. Journal for immunotherapy of cancer. 2020, Mar; 8(1): pii: e000147..
  1. 8.   Nivolumab Is Effective in Mismatch Repair-Deficient Noncolorectal Cancers: Results From Arm Z1D-A Subprotocol of the NCI-MATCH (EAY131) Study
  2. Azad, Nilofer S; Gray, Robert J; Overman, Michael J; Schoenfeld, Jonathan D; Mitchell, Edith P; Zwiebel, James A; Sharon, Elad; Streicher, Howard; Li, Shuli; McShane, Lisa M; Rubinstein, Larry; Patton, David R; Williams,Mickey; Coffey,Brent; Hamilton, Stanley R; Bahary, Nathan; Suga, J Marie; Hatoum, Hassan; Abrams, Jeffrey S; Conley, Barbara A; Arteaga, Carlos L; Harris, Lyndsay; O'Dwyer, Peter J; Chen, Alice P; Flaherty, Keith T
  3. Journal of clinical oncology : official journal of the American Society of Clinical Oncology. 2020, JAN 20; 38(3): 214-+.
  1. 9.   Structural insights into the mechanism of double strand break formation by Hermes, a hAT family eukaryotic DNA transposase
  2. Hickman, Alison B.; Voth, Andrea; Ewis, Hosam; Li, Xianghong; Craig, Nancy L.; Dyda, Fred
  3. NUCLEIC ACIDS RESEARCH. 2018, NOV 2; 46(19): 10286-10301.
  1. 10.   Biochemical and biological studies of mouse APOBEC3
  2. Nair, S.; Sanchez-Martinez, S.; Ji, X.; Rein, A.
  3. Journal of Virology. 2014, Apr; 88(7): 3850-60.
  1. 11.   Mechanisms of Allergen-Antibody Interaction of Cockroach Allergen Bla g 2 with Monoclonal Antibodies That Inhibit IgE Antibody Binding
  2. Glesner, J.; Wunschmann, S.; Li, M.; Gustchina, A.; Wlodawer, A.; Himly, M.; Chapman, M. D.; Pomes, A.
  3. Plos One. 2011, Jul; 6(7): 11.
  1. 12.   The RNA Transport Element of the Murine musD Retrotransposon Requires Long-range Intramolecular Interactions for Function
  2. Legiewicz, M.; Zolotukhin, A. S.; Pilkington, G. R.; Purzycka, K. J.; Mitchell, M.; Uranishi, H.; Bear, J.; Pavlakis, G. N.; Le Grice, S. F. J.; Felber, B. K.
  3. Journal of Biological Chemistry. 2010, Dec; 285(53): 42097-42104.
  1. 13.   A Custom 148 Gene-Based Resequencing Chip and the SNP Explorer Software: New Tools to Study Antibody Deficiency
  2. Wang, H. Y.; Gopalan, V.; Aksentijevich, I.; Yeager, M.; Ma, C. A.; Mohamoud, Y. A.; Quinones, M.; Matthews, C.; Boland, J.; Niemela, J. E.; Torgerson, T. R.; Giliani, S.; Uzel, G.; Orange, J. S.; Shapiro, R.; Notarangelo, L.; Ochs, H. D.; Fleisher, T.; Kastner, D.; Chanock, S. J.; Jain, A.
  3. Human Mutation. 2010, Sep; 31(9): 1080-1088.
  1. 14.   A Succession of Mechanisms Stimulate Efficient Reconstituted HIV-1 Minus Strand Strong Stop DNA Transfer
  2. Song, M.; Balakrishnan, M.; Gorelick, R. J.; Bambara, R. A.
  3. Biochemistry. 2009 48(8): 1810-1819.
  1. 15.   Role of the HIV gp120 conserved domain 5 in processing and viral entry
  2. Sen, J.; Jacobs, A.; Caffrey, M.
  3. Biochemistry. 2008 47(30): 7788-7795.
  1. 16.   Neurocalcin delta modulation of ROS-GC1, a new model of Ca2+ signaling
  2. Venkataraman, V.; Duda, T.; Ravichandran, S.; Sharma, R. K.
  3. Biochemistry. 2008 47(25): 6590-6601.
  1. 17.   TGFBR3 loss and consequences in prostate cancer
  2. Sharifi, N.; Hurt, E. M.; Kawasaki, B. T.; Farrar, W. L.
  3. Prostate. 2007, Feb; 67(3): 301-311.
  1. 18.   Binding characteristics of IFN-alpha subvariants to IFNAR2-EC and influence of the 6-histidine tag
  2. Schmeisser, H.; Kontsek, P.; Esposito, D.; Gillette, W.; Schreiber, G.; Zoon, K. C.
  3. Journal of Interferon and Cytokine Research. 2006, Dec; 26(12): 866-876.
  1. 19.   Constitutive activation of Akt contributes to the pathogenesis and survival of mantle cell lymphoma
  2. Rudelius, M.; Pittaluga, S.; Nishizuka, S.; Pham, T. H. T.; Fend, F.; Jaffe, E. S.; Quintanilla-Martinez, L.; Raffeld, M.
  3. Blood. 2006, Sep; 108(5): 1668-1676.
  1. 20.   Dynamic behavior of the telomerase RNA hairpin structure and its relationship to dyskeratosis congenita
  2. Yingling, Y. G.; Shapiro, B. A.
  3. Journal of Molecular Biology. 2005, APR 22; 348(1): 27-42.
  1. 21.   Vpr protein of human immunodeficiency virus type 1 binds to 14-3-3 proteins and facilitates complex formation with Cdc25C: Implications for cell cycle arrest
  2. Kino, T.; Gragerov, A.; Valentin, A.; Tsopanomihalou, M.; Ilyina-Gragerova, G.; Erwin-Cohen, R.; Chrousos, G. P.; Pavlakis, G. N.
  3. Journal of Virology. 2005, MAR; 79(5): 2780-2787.
  1. 22.   Mutational analysis of the DEAD-box RNA helicase eIF4AII characterizes its interaction with transformation suppressor Pdcd4 and eIF4GI
  2. Zakowicz, H.; Yang, H. S.; Stark, C.; Wlodawer, A.; Laronde-Leblanc, N.; Colburn, N. H.
  3. Rna-a Publication of the Rna Society. 2005, MAR; 11(3): 261-274.
  1. 23.   Structural and functional analysis of the RNA transport element, a member of an extensive family present in the mouse genome
  2. Smulevitch, S.; Michalowski, D.; Zolotukhin, A. S.; Schneider, R.; Bear, J.; Roth, P.; Pavlakis, G. N.; Felber, B. K.
  3. Journal of Virology. 2005, FEB; 79(4): 2356-2365.
  1. 24.   siRNA, miRNA and HIV: promises and challenges
  2. Yeung, M. L.; Bennasser, Y.; Le, S. Y.; Jeang, K. T.
  3. Cell Research. 2005, NOV-DEC; 15(11-12): 935-946.
  1. 25.   Mutations in the RNase H primer grip domain of murine leukemia virus reverse transcriptase decrease efficiency and accuracy of plus-strand DNA transfer
  2. Mbisa, J. L.; Nikolenko, G. N.; Pathak, V. K.
  3. Journal of Virology. 2005, JAN; 79(1): 419-427.
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