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  1. 1.   Genome-wide profiling of transcription factor activity in primary liver cancer using single-cell ATAC sequencing
  2. Craig, Amanda J; Silveira, Maruhen A Datsch; Ma, Lichun; Revsine, Mahler; Wang, Limin; Heinrich, Sophia; Rae, Zachary; Ruchinskas, Allison; Dadkhah,Kimia; Do, Whitney; Behrens, Shay; Mehrabadi, Farid R; Dominguez, Dana A; Forgues, Marshonna; Budhu, Anuradha; Chaisaingmongkol, Jittiporn; Hernandez, Jonathan M; Davis, Jeremy L; Tran,Bao; Marquardt, Jens U; Ruchirawat, Mathuros; Kelly, Michael; Greten, Tim F; Wang, Xin W
  3. Cell Reports. 2023, Nov 17; 42(11): 113446.
  1. 2.   Multi-omics: Differential expression of IFN-? results in distinctive mechanistic features linking chronic inflammation, gut dysbiosis, and autoimmune diseases
  2. Bae,Heekyong; Leung, Patrick S C; Hodge, Deborah L; Fenimore,John; Jeon, Seon-Min; Thovarai,Vishal; Dzutsev,Amiran; Welcher, Andrew A; Boedigheimer, Michael; Damore, Michael A; Choi, Myung-Sook; Fravell, Richard A; Trinchieri,Giorgio; Gershwin, M Eric; Young,Howard
  3. Journal of autoimmunity. 2020, JUL; 111: 102436.
  1. 3.   Target identification among known drugs by deep learning from heterogeneous networks
  2. Zeng, Xiangxiang; Zhu, Siyi; Lu, Weiqiang; Liu, Zehui; Huang, Jin; Zhou, Yadi; Fang, Jiansong; Huang, Yin; Guo, Huimin; Li, Lang; Trapp, Bruce D.; Nussinov,Ruth; Eng, Charis; Loscalzo, Joseph; Cheng, Feixiong
  3. CHEMICAL SCIENCE. 2020, Feb 21; 11(7): 1775-1797.
  1. 4.   Allostery in Its Many Disguises: From Theory to Applications
  2. Wodak, Shoshana J.; Paci, Emanuele; Dokholyan, Nikolay; Berezovsky, Igor N.; Horovitz, Amnon; Li, Jing; Hilser, Vincent J.; Behar, Ivet; Karanicolas, John; Stock, Gerhard; Hamm, Peter; Stote, Roland H.; Eberhardt, Jerome; Chebaro, Yassmine; Dejaegere, Annick; Cecchini, Marco; Changeux, Jean-Pierre; Bolhuis, Peter G.; Vreede, Jocelyne; Faccioli, Pietro; Orioli, Simone; Ravasio, Riccardo; Yen, Le; Brito, Carolina; Wyart, Matthieu; Gkeka, Paraskevi; Rivalta, Ivan; Palermo, Giulia; Mccammon, J. Andrew; Panecka-Hofman, Joanna; Wade, Rebecca C.; Di Pizio, Antonella; Niv, Masha Y.; Nussinov,Ruth; Tsai,Chung-Jung; Jang,Hyunbum; Padhorny, Dzmitry; Kozakov, Dima; Mcleish, Tom
  3. Structure (London, England : 1993). 2019, Apr 2; 27(4): 566-578.
  1. 5.   Rapid and efficient reprogramming of somatic cells to induced pluripotent stem cells by retinoic acid receptor gamma and liver receptor homolog 1
  2. Wang, W.; Yang, J.; Liu, H.; Lu, D.; Chen, X. F.; Zenonos, Z.; Campos, L. S.; Rad, R.; Guo, G.; Zhang, S. J.; Bradley, A.; Liu, P. T.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2011, Nov; 108(45): 18283-18288.
  1. 6.   Arginine Methylation by PRMT5 at a Naturally Occurring Mutation Site Is Critical for Liver Metabolic Regulation by Small Heterodimer Partner
  2. Kanamaluru, D.; Xiao, Z.; Fang, S. S.; Choi, S. E.; Kim, D. H.; Veenstra, T. D.; Kemper, J. K.
  3. Molecular and Cellular Biology. 2011, Apr; 31(7): 1540-1550.
  1. 7.   FXR Acetylation Is Normally Dynamically Regulated by p300 and SIRT1 but Constitutively Elevated in Metabolic Disease States
  2. Kemper, J. K.; Xiao, Z.; Ponugoti, B.; Miao, J.; Fang, S.; Kanamaluru, D.; Tsang, S.; Wu, S. Y.; Chiang, C. M.; Veenstra, T. D.
  3. Cell Metabolism. 2009 10(5): 392-404.
  1. 8.   Bile acid signaling pathways increase stability of Small Heterodimer Partner (SHP) by inhibiting ubiquitin-proteasomal degradation
  2. Miao, J.; Xiao, Z.; Kanamaluru, D.; Min, G.; Yau, P. M.; Veenstra, T. D.; Ellis, E.; Strom, S.; Suino-Powell, K.; Xu, H. E.; Kemper, J. K.
  3. Genes & Development. 2009 23(8): 986-996.
  1. 9.   The chemical defensome: Environmental sensing and response genes in the Strongylocentrotus purpuratus genome
  2. Goldstone, J. V.; Hamdoun, A.; Cole, B. J.; Howard-Ashby, M.; Nebert, D. W.; Scally, M.; Dean, M.; Epel, D.; Hahn, M. E.; Stegeman, J. J.
  3. Developmental Biology. 2006, Dec; 300(1): 366-384.
  1. 10.   Coactivators and corepressors of NF-kappa B in I kappa Beta alpha gene promoter
  2. Gao, Z. G.; Chiao, P.; Zhang, X.; Zhang, X. H.; Lazar, M. A.; Seto, E.; Young, H. A.; Ye, J. P.
  3. Journal of Biological Chemistry. 2005, JUN 3; 280(22): 21091-21098.
  1. 11.   Nuclear receptors as negative modulators of STAT3 in multiple myeloma
  2. Wang, L. H.; Yang, X. Y.; Zhang, X. H.; Farrar, W. L.
  3. Cell Cycle. 2005, FEB; 4(2): 242-245.
  1. 12.   Enhanced acetaminophen toxicity by activation of the pregnane X receptor
  2. Guo, G. L.; Moffit, J. S.; Ward, J. M.; Aleksunes, L. A.; Slitt, A. L.; Kliewer, S. A.; Manautou, J. E.; Gonzalez, F. J.
  3. Toxicological Sciences. 2004, DEC; 82(2): 374-380.
  1. 13.   Diminished hepatocellular proliferation in mice humanized for the nuclear receptor peroxisome proliferator-activated receptor alpha
  2. Cheung, C.; Akiyama, T. E.; Ward, J. M.; Nicol, C. J.; Feigenbaum, L.; Vinson, C.; Gonzalez, F. J.
  3. Cancer Research. 2004 64(11): 3849-3854.
  1. 14.   Complementary roles of farnesoid X receptor, pregnane X receptor, and constitutive androstane receptor in protection against bile acid toxicity
  2. Guo, G. L.; Lambert, G.; Negishi, M.; Ward, J. M.; Brewer, H. B.; Kliewer, S. A.; Gonzalez, F. J.; Sinal, C. J.
  3. Journal of Biological Chemistry. 2003 278(46): 45062-45071.
  1. 15.   Human immunodeficiency virus type 1 (HIV-1) accessory protein Vpr induces transcription of the HIV-1 and glucocorticoid- responsive promoters by binding directly to p300/CBP coactivators
  2. Kino, T.; Gragerov, A.; Slobodskaya, O.; Tsopanomichalou, M.; Chrousos, G. P.; Pavlakis, G. N.
  3. Journal of Virology. 2002 76(19): 9724-9734.
  1. 16.   AP-1 transrepressing retinoic acid does not deplete coactivators or AP-1 monomers but may target specific Jun or Fos containing dimers
  2. Suzukawa, K.; Colburn, N. H.
  3. Oncogene. 2002 21(14): 2181-2190.
  1. 17.   Characterization of chenodeoxycholic acid as an endogenous antagonist of the G-coupled formyl peptide receptors
  2. Chen, X.; Yang, D.; Shen, W.; Dong, H. F.; Wang, J. M.; Oppenheim, J. J.; Howard, O. M. Z.
  3. Inflammation Research. 2000 49(12): 744-755.
  1. 18.   The HIV-1 virion-associated protein Vpr is a coactivator of the human glucocorticoid receptor
  2. Kino, T.; Gragerov, A.; Kopp, J. B.; Stauber, R. H.; Pavlakis, G. N.; Chrousos, G. P.
  3. Journal of Experimental Medicine. 1999 189(1): 51-61.
  1. 19.   Chromosomal Mapping of the Human and Murine Orphan Receptors Err-Alpha (Esrra) and Err-Beta (Esrrb) and Identification of a Novel Human Err-Alpha-Related Pseudogene
  2. Sladek, R.; Beatty, B.; Squire, J.; Copeland, N. G.; Gilbert, D. J.; Jenkins, N. A.; Giguere, V.
  3. Genomics. 1997 45(2): 320-326.
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