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  1. 1.   Gene network landscape of mouse splenocytes reveals integrin complex as the A151 ODN-responsive hub molecule in the immune transcriptome
  2. Yazar, Volkan; Yilmaz, Ismail Cem; Bulbul, Artun; Klinman, Dennis M; Gursel, Ihsan
  3. Molecular Therapy. Nucleic Acids. 2023, Mar 14; 31: 553-565.
  1. 2.   The dimeric form of bacterial L-asparaginase YpAI is fully active
  2. Strzelczyk,Pawel; Zhang,Di; Alexandratos,Jerry; Piszczek, Grzegorz; Wlodawer,Alexander; Lubkowski,Jacek
  3. The FEBS Journal. 2022, Sep 24;
  1. 3.   Antisense transcription from lentiviral gene targeting linked to an integrated stress response in colorectal cancer cells
  2. Ha, Taekyu; DiPrima, Michael; Koparde,Vishal; Jailwala,Parthav; Ohnuki, Hidetaka; Feng, Jing-Xin; Palangat, Murali; Larson, Daniel; Tosato, Giovanna
  3. Molecular Therapy. Nucleic Acids. 2022, Jun 14; 28: 877-891.
  1. 4.   Myelination induces axonal hotspots of synaptic vesicle fusion that promote sheath growth
  2. Almeida, Rafael G; Williamson, Jill M; Madden, Megan E; Early, Jason J; Voas,Matthew; Talbot, William S; Bianco, Isaac H; Lyons, David A
  3. Current biology : CB. 2021, Sep 13; 31(17): 3743-3754.e5.
  1. 5.   Cytosolic d-type CpG-oligonucleotides induce a type I interferon response by activating the cGAS-STING signaling pathway
  2. Bode, Christian; Poth, Jens M.; Fox, Mario; Schulz, Susanne; Klinman, Dennis M.; Latz, Eicke; Steinhagen, Folkert
  3. European Journal of Immunology. 2021, May 12; 51(7): 1686-1697.
  1. 6.   Homogeneous Oligomers of Pro-apoptotic BAX Reveal Structural Determinants of Mitochondrial Membrane Permeabilization
  2. Hauseman, Zachary J; Harvey, Edward P; Newman, Catherine E; Wales, Thomas E; Bucci, Joel C; Mintseris, Julian; Schweppe, Devin K; David, Liron; Fan,Lixin; Cohen, Daniel T; Herce, Henry D; Mourtada, Rida; Ben-Nun, Yael; Bloch, Noah B; Hansen, Scott B; Wu, Hao; Gygi, Steven P; Engen, John R; Walensky, Loren D
  3. Molecular cell. 2020, JUL 2; 79(1): 68-+.
  1. 7.   Targeting the Oncogenic Long Non-coding RNA SLNCR1 by Blocking Its Sequence-Specific Binding to the Androgen Receptor
  2. Schmidt, Karyn; Weidmann, Chase A; Hilimire, Thomas A; Yee, Elaine; Hatfield, Breanne M; Schneekloth,Jay; Weeks, Kevin M; Novina, Carl D
  3. Cell reports. 2020, Jan 14; 30(2): 541-554.e5.
  1. 8.   Assaying Homodimers of NF-?B in Live Single Cells
  2. Martin, Erik W; Chakraborty, Sayantan; Presman, Diego M; Tomassoni Ardori,Francesco; Oh, Kyu-Seon; Kaileh, Mary; Tessarollo,Lino; Sung, Myong-Hee
  3. Frontiers in immunology. 2019, Nov 7; 10: 2609.
  1. 9.   Organization of Farnesylated, Carboxymethylated KRAS4B on Membranes
  2. Barklis, Eric; Stephen,Andy; Staubus, August O; Barklis, Robin Lid; Alfadhli, Ayna
  3. Journal of molecular biology. 2019, SEP 6; 431(19): 3706-3717.
  1. 10.   Atomistic-level study of the interactions between hIAPP protofibrils and membranes: Influence of pH and lipid composition
  2. Qian, Zhenyu; Zou, Yu; Zhang, Qingwen; Chen, Peijie; Ma, Buyong; Wei, Guanghong; Nussinov, Ruth
  3. Biochimica et Biophysica Acta. 2018, Sep; 1860(9): 1818-1825.
  1. 11.   Safety, Tolerability, and Pharmacokinetics of Radavirsen (AVI-7100), an Antisense Oligonucleotide Targeting Influenza A M1/M2 translation.
  2. Beigel, John; Voell, Jocelyn; Muñoz, Paula; Kumar, Parag; Brooks, Kristina M; Zhang, Jianbo; Iversen, Patrick; Heald, Alison; Wong, Michael; Davey, Richard T
  3. British journal of clinical pharmacology. 2017, Sep 20;
  1. 12.   Graphite-Templated Amyloid Nanostructures Formed by a Potential Pentapeptide Inhibitor for Alzheimer's Disease: A Combined Study of Real-Time Atomic Force Microscopy and Molecular Dynamics Simulations
  2. Li, Na; Jang, Hyunbum; Yuan, Ming; Li, Wanrong; Yun, Xiaolin; Lee, Joon; Du, Qiqige; Nussinov, Ruth; Hou, Jiahua; Lal, Ratnesh; Zhang, Feng
  3. Langmuir. 2017, Jul 11; 33(27): 6647-6656.
  1. 13.   Performance comparison of SNP detection tools with illumina exome sequencing data--an assessment using both family pedigree information and sample-matched SNP array data
  2. Yi, M.; Zhao, Y.; Jia, L.; He, M.; Kebebew, E.; Stephens, R. M.
  3. Nucleic Acids Research. 2014, Jul; 42(12): e101.
  1. 14.   Suppressive oligodeoxynucleotides reduce lung cancer susceptibility in mice with silicosis
  2. Bode, C.; Kinjo, T.; Alvord, W. G.; Klinman, D. M.
  3. Carcinogenesis. 2014, May; 35(5): 1078-83.
  1. 15.   Intratumoral Injection of CpG Oligonucleotides Induces the Differentiation and Reduces the Immunosuppressive Activity of Myeloid-Derived Suppressor Cells
  2. Shirota, Y.; Shirota, H.; Klinman, D. M.
  3. Journal of Immunology. 2012, Feb; 188(4): 1592-1599.
  1. 16.   Polymorphic Triple beta-Sheet Structures Contribute to Amide Hydrogen/Deuterium (H/D) Exchange Protection in the Alzheimer Amyloid beta 42 Peptide
  2. Ma, B. Y.; Nussinov, R.
  3. Journal of Biological Chemistry. 2011, Sep; 286(39): 34244-34253.
  1. 17.   Polymorphism of amyloid beta peptide in different environments: implications for membrane insertion and pore formation
  2. Arce, F. T.; Jang, H. B.; Ramachandran, S.; Landon, P. B.; Nussinov, R.; Lal, R.
  3. Soft Matter. 2011, Jun 7; 7(11): 5267-5273.
  1. 18.   The acceleration of wound healing in primates by the local administration of immunostimulatory CpG oligonucleotides
  2. Yamamoto, M.; Sato, T.; Beren, J.; Verthelyi, D.; Klinman, D. M.
  3. Biomaterials. 2011, Jun; 32(18): 4238-4242.
  1. 19.   Integrating the intrinsic conformational preferences of noncoded alpha-amino acids modified at the peptide bond into the Noncoded Amino acids Database
  2. Revilla-Lopez, G.; Rodriguez-Ropero, F.; Curco, D.; Torras, J.; Calaza, M. I.; Zanuy, D.; Jimenez, A. I.; Cativiela, C.; Nussinov, R.; Aleman, C.
  3. Proteins-Structure Function and Bioinformatics. 2011, Jun; 79(6): 1841-1852.
  1. 20.   CpG-conjugated apoptotic tumor cells elicit potent tumor-specific immunity
  2. Shirota, H.; Klinman, D. M.
  3. Cancer Immunology Immunotherapy. 2011, May; 60(5): 659-669.
  1. 21.   Symmetry-Based Self-assembled Nanotubes Constructed Using Native Protein Structures: The Key Role of Flexible Linkers
  2. Buch, I.; Tsai, C. J.; Wolfson, H. J.; Nussinov, R.
  3. Protein and Peptide Letters. 2011, Apr; 18(4): 362-372.
  1. 22.   CpG DNA as a vaccine adjuvant
  2. Bode, C.; Zhao, G.; Steinhagen, F.; Kinjo, T.; Klinman, D. M.
  3. Expert Review of Vaccines. 2011, Apr; 10(4): 499-511.
  1. 23.   Anti-Human Embryonic Stem Cell Monoclonal Antibody Hesca-2 Binds to a Glycan Epitope Commonly Found on Carcinomas
  2. Shoreibah, M. G.; Jackson, C. L.; Price, P. W.; Meagher, R.; Godwin, A. K.; Cai, Q.; Gildersleeve, J. C.
  3. Stem Cells and Development. 2011, Mar; 20(3): 515-525.
  1. 24.   Conserved Intramolecular Disulfide Bond Is Critical to Trafficking and Fate of ATP-binding Cassette (ABC) Transporters ABCB6 and Sulfonylurea Receptor 1 (SUR1)/ABCC8
  2. Fukuda, Y.; Aguilar-Bryan, L.; Vaxillaire, M.; Dechaume, A.; Wang, Y.; Dean, M.; Moitra, K.; Bryan, J.; Schuetz, J. D.
  3. Journal of Biological Chemistry. 2011, Mar; 286(10): 8481-8492.
  1. 25.   The Unique Alzheimer's beta-Amyloid Triangular Fibril Has a Cavity along the Fibril Axis under Physiological Conditions
  2. Miller, Y.; Ma, B. Y.; Nussinov, R.
  3. Journal of the American Chemical Society. 2011, Mar; 133(8): 2742-2748.
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