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  1. 1.   How to recover from a bad start: adaptation of HIV-1 transcription start site mutants during serial passaging in culture
  2. Nikolaitchik,Olga; Chameettachal,Akhil; Islam,Mohammad Saiful; Keele,Brandon; Delviks-Frankenberry, Krista; Pathak,Vinay; Hu,Wei-Shau; Cheng,Zetao
  3. Journal of Virology. 2025, May 07; e0015925.
  1. 2.   Elements in the 5' Untranslated Region of Viral RNA Important for HIV Gag Recognition and Cross-Packaging
  2. Cheng,Zetao; Nikolaitchik,Olga; Duchon,Alice; Rawson, Jonathan M O; Pathak,Vinay; Hu,Wei-Shau
  3. Viruses. 2025, Apr 10; 17(4): 551.
  1. 3.   HIV-1 transcription start sites usage and its impact on unspliced RNA functions in people living with HIV
  2. Islam,Mohammad Saiful; Maldarelli,Frank; Nikolaitchik,Olga; Cheng,Zetao; Gorelick,Robert; Nikolaitchik, Maria A; Pathak,Vinay; Hu,Wei-Shau
  3. mBio. 2024, Dec 27; e0357624.
  1. 4.   Kinetic Studies on the Interaction of HIV-1 Gag Protein with the HIV-1 RNA Packaging Signal
  2. Rink,Connie; Kroupa, Tomas; Rein,Alan; Datta,Siddhartha
  3. Viruses. 2024, Sep 25; 16(10): 1517.
  1. 5.   HIV-1 usurps transcription start site heterogeneity of host RNA polymerase II to maximize replication fitness
  2. Nikolaitchik,Olga; Islam,Mohammad Saiful; Kitzrow,Jonathan; Duchon,Alice; Cheng,Zetao; Liu, Yang; Rawson, Jonathan M O; Shao,Wei; Nikolaitchik, Maria; Kearney,Mary; Maldarelli,Frank; Musier-Forsyth, Karin; Pathak,Vinay; Hu,Wei-Shau
  3. Proceedings of the National Academy of Sciences of the United States of America. 2023, Jun 06; 120(23): e2305103120.
  1. 6.   Adaptation of HIV-1/HIV-2 Chimeras with Defects in Genome Packaging and Viral Replication
  2. Rawson, Jonathan M O; Nikolaitchik,Olga; Yoo, Jennifer A; Somoulay, Xayathed; Brown, Matthew A; Mbuntcha Bogni, Franck S; Pathak,Vinay; Soheilian,Ferri; Slack, Ryan L; Sarafianos, Stefan G; Hu,Wei-Shau
  3. mBio. 2022, Aug 29; e0222022.
  1. 7.   Transcription Start Site Heterogeneity and Preferential Packaging of Specific Full-Length RNA Species Are Conserved Features of Primate Lentiviruses
  2. Rawson, Jonathan M O; Nikolaitchik,Olga; Shakya,Saurabh; Keele,Brandon; Pathak,Vinay; Hu,Wei-Shau
  3. Microbiology Spectrum. 2022, Jun 23; e0105322.
  1. 8.   Dataset of high-throughput ligand screening against the RNA Packaging Signals regulating Hepatitis B Virus nucleocapsid formation
  2. Abulwerdi, Fardokht; Fatehi, Farzad; Manfield, Iain W; Le Grice,Stuart; Schneekloth,Jay; Twarock, Reidun; Stockley, Peter G; Patel, Nikesh
  3. Data in Brief. 2022, Jun; 42: 108206.
  1. 9.   Dysregulation of Hepatitis B Virus Nucleocapsid Assembly in vitro by RNA-binding Small Ligands
  2. Patel, Nikesh; Abulwerdi, Fardokht; Fatehi, Farzad; Manfield, Iain; Le Grice,Stuart; Schneekloth,Jay; Twarock, Reidun; Stockley, Peter G
  3. Journal of Molecular Biology. 2022, Mar 24; 167557.
  1. 10.   Complete Genome Sequence of Herpes Simplex Virus 2 Strain G
  2. Chang,Weizhong; Jiao, Xiaoli; Sui,Hongyan; Goswami, Suranjana; Sherman,Brad; Fromont,Caroline; Caravaca-Guasch,Juan Manuel; Tran,Bao; Imamichi,Tomozumi
  3. Viruses. 2022, Mar 05; 14(3):
  1. 11.   Selective packaging of HIV-1 RNA genome is guided by the stability of 5 ' untranslated region polyA stem
  2. Nikolaitchik,Olga; Liu, Shuohui; Kitzrow, Jonathan P.; Liu, Yang; Rawson, Jonathan M. O.; Shakya, Saurabh; Cheng, Zetao; Pathak, Vinay K.; Hu, Wei-Shau; Musier-Forsyth, Karin
  3. Proceedings of the National Academy of Sciences of the United States of America . 2021, Dec 14; 118(50):
  1. 12.   Plasma Membrane Anchoring and Gag:Gag Multimerization on Viral RNA Are Critical Properties of HIV-1 Gag Required To Mediate Efficient Genome Packaging
  2. Duchon, Alice; Santos, Steven; Chen, Jianbo; Brown, Matthew; Nikolaitchik, Olga A.; Tai, Sheldon; Chao, Jeffrey A.; Freed,Eric; Pathak,Vinay; Hu, Wei-Shau
  3. mBio. 2021, Nov-Dec; 12(6):
  1. 13.   Unpaired Guanosines in the 5' Untranslated Region of HIV-1 RNA Act Synergistically to Mediate Genome Packaging
  2. Nikolaitchik,Olga; Somoulay, Xayathed; Rawson,Jonathan; Yoo, Jennifer A; Pathak,Vinay; Hu,Wei-Shau
  3. Journal of virology. 2020, NOV; 94(21): pii: JVI.00439-20.
  1. 14.   Biphasic Packing of DNA and Internal Proteins in Bacteriophage T4 Heads Revealed by Bubblegram Imaging
  2. Wu,Weimin; Cheng, Naiqian; Black, Lindsay W.; Dietz, Hendrik; Steven, Alasdair C.
  3. VIRUSES-BASEL. 2020, NOV; 12(11):
  1. 15.   Distinct Contributions of Different Domains within the HIV-1 Gag Polyprotein to Specific and Nonspecific Interactions with RNA
  2. Kroupa,Tomas; Datta,Siddhartha; Rein,Alan
  3. Viruses. 2020, Apr 02; 12(4): pii: v12040394.
  1. 16.   Visualizing the translation and packaging of HIV-1 full-length RNA
  2. Chen,Jianbo; Liu, Yang; Wu, Bin; Nikolaitchik,Olga; Mohan, Preeti R; Chen, Jiji; Pathak,Vinay; Hu,Wei-Shau
  3. Proceedings of the National Academy of Sciences of the United States of America. 2020, MAR 17; 117(11): 6145-6155.
  1. 17.   Molecular Basis of Encapsidation of Hepatitis C Virus Genome
  2. Shi, Scarlett; Suzuki, Tetsuro
  3. Frontiers in Microbiology. 2018, Mar 07; 9: 396.
  1. 18.   Mechanistic differences between HIV-1 and SIV nucleocapsid proteins and cross-species HIV-1 genomic RNA recognition.
  2. Post, Klara; Olson, Erik D; Naufer, M Nabuan; Gorelick, Robert J; Rouzina, Ioulia; Williams, Mark C; Musier-Forsyth, Karin; Levin, Judith G
  3. Retrovirology. 2016, Dec 29; 13(1): 89.
  1. 19.   A Boost for the Emerging Field of RNA Nanotechnology Report on the First International conference on RNA Nanotechnology
  2. Shukla, G. C.; Hague, F.; Tor, Y.; Wilhelmsson, L. M.; Toulme, J. J.; Isambert, H.; Guo, P. X.; Rossi, J. J.; Tenenbaum, S. A.; Shapiro, B. A.
  3. Acs Nano. 2011, May; 5(5): 3405-3418.
  1. 20.   Secondary Structure of the Mature Ex Virio Moloney Murine Leukemia Virus Genomic RNA Dimerization Domain
  2. Gherghe, C.; Leonard, C. W.; Gorelick, R. J.; Weeks, K. M.
  3. Journal of Virology. 2010, Jan; 84(2): 898-906.
  1. 21.   Revisiting Plus-Strand DNA Synthesis in Retroviruses and Long Terminal Repeat Retrotransposons: Dynamics of Enzyme: Substrate Interactions
  2. Fabris, D.; Marino, J. P.; Le Grice, S. F. J.
  3. Viruses-Basel. 2009, Dec; 1(3): 657-677.
  1. 22.   Retroviral Nucleocapsid Proteins Display Nonequivalent Levels of Nucleic Acid Chaperone Activity
  2. Stewart-Maynard, K. M.; Cruceanu, M.; Wang, F.; Vo, M. N.; Gorelick, R. J.; Williams, M. C.; Rouzina, I.; Musier-Forsyth, K.
  3. Journal of Virology. 2008 82(20): 10129-10142.
  1. 23.   Molecular determinants of HIV-1 intersubtype recombination potential
  2. Chin, M. P. S.; Chen, J. B.; Nikolaitchik, O. A.; Hu, W. S.
  3. Virology. 2007, Jul; 363(2): 437-446.
  1. 24.   Molecular mechanisms of simian immunodeficiency virus SIVagm RNA encapsidation
  2. Fu, W.; Prasad, V.; Chen, J. B.; Nikolaitchik, O.; Hu, W. S.
  3. Virology. 2007, Jun; 363(1): 210-219.
  1. 25.   High frequency of genetic recombination is a common feature of primate lentivirus replication
  2. Chen, J. B.; Powell, D.; Hu, W. S.
  3. Journal of Virology. 2006, Oct; 80(19): 9651-9658.
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