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  1. 1.   Comparative Genomic Hybridization (CGH) in New World Monkeys (Primates) Reveals the Distribution of Repetitive Sequences in Cebinae and Callitrichinae
  2. Milioto, Vanessa; Arizza, Vincenzo; Vizzini, Aiti; Perelman, Polina L; Roelke-Parker,Melody; Dumas, Francesca
  3. Biology. 2024, Dec 29; 14(1):
  1. 2.   TPPP-BRD9 Fusion-Related Gallbladder Carcinomas are Frequently Associated with Intracholecystic Neoplasia, Neuroendocrine Carcinoma, and a Distinctive Small Tubular-Type Adenocarcinoma Commonly Accompanied with a Syringomatous Pattern
  2. Pehlivanoglu, Burcin; Araya, Juan Carlos; Lawrence,Scott; Roa, Juan Carlos; Balci, Serdar; Andersen, Jesper B; Rashid, Asif; Hsing, Ann W; Zhu, Bin; Gao, Yu-Tang; Koshiol, Jill; Adsay, Volkan
  3. Human Pathology. 2024, Jul 05; 150: 67-73.
  1. 3.   Dietary Patterns, Apolipoprotein L1 Risk Genotypes, and CKD Outcomes Among Black Adults in the Reasons for Geographic and Racial Differences in Stroke (REGARDS) Cohort Study
  2. Ilori, Titilayo O; Brooks, Marquita S; Desai, Parin N; Cheung, Katharine L; Judd, Suzanne E; Crews, Deidra C; Cushman, Mary; Winkler,Cheryl; Shlipak, Michael G; Kopp, Jeffrey B; Naik, Rakhi P; Estrella, Michelle M; Gutiérrez, Orlando M; Kramer, Holly
  3. Kidney Medicine. 2023, May; 5(5): 100621.
  1. 4.   Sonic hedgehog is not a limb morphogen but acts as a trigger to specify all digits in mice
  2. Zhu, Jianjian; Patel,Rashmi; Trofka, Anna; Harfe, Brian D; Mackem,Susan
  3. Developmental Cell. 2022, Aug 13; 57(17): 2048-2062.
  1. 5.   Targeted Deep Sequencing of Bladder Tumors Reveals Novel Associations between Cancer Gene Mutations and Mutational Signatures with Major Risk Factors
  2. Koutros, Stella; Rao, Nina; Moore, Lee E.; Nickerson, Michael L.; Lee, Donghyuk; Zhu, Bin; Pardo, Larissa A.; Baris, Dalsu; Schwenn, Molly; Johnson, Alison; Jones,Kristine; Garcia-Closas, Montserrat; Prokunina-Olsson, Ludmila; Silverman, Debra T.; Rothman, Nathaniel; Dean,Michael
  3. CLINICAL CANCER RESEARCH. 2021, Jul; 27(13): 3725-3733.
  1. 6.   Lack of transgenerational effects of ionizing radiation exposure from the Chernobyl accident
  2. Yeager,Meredith; Machiela, Mitchell J.; Kothiya, Prachi; Dean,Michael; Bodelon, Clara; Suman, Shalabh; Wang,Mingyi; Mirabello, Lisa; Nelson, Chase W.; Zhou,Weiyin; Palmer, Cameron; Ballew, Bari; Colli, Leandro M.; Freedman, Neal D.; Dagnall,Casey; Hutchinson,Amy; Vij, Vibha; Maruvka, Yosi; Hatch, Maureen; Illienko, Iryna; Belayev, Yuri; Nakamura, Nori; Chumak, Vadim; Bakhanova, Elena; Belyi, David; Kryuchkov, Victor; Golovanov, Ivan; Gudzenko, Natalia; Cahoon, Elizabeth K.; Albert, Paul; Drozdovitch, Vladimir; Little, Mark P.; Mabuchi, Kiyohiko; Stewart, Chip; Getz, Gad; Bazyka, Dimitry; de Gonzalez, Amy Berrington; Chanock, Stephen J.
  3. Science (New York, N.Y.). 2021, May 14; 372(6543): 725-729.
  1. 7.   Using whole-exome sequencing and protein interaction networks to prioritize candidate genes for germline cutaneous melanoma susceptibility
  2. Yepes, Sally; Tucker, Margaret A.; Koka, Hela; Xiao, Yanzi; Jones,Kristine; Vogt,Aurelie; Burdette, Laurie; Luo,Wen; Zhu,Bin; Hutchinson,Amy; Yeager,Meredith; Hicks,Belynda; Freedman, Neal D.; Chanock, Stephen J.; Goldstein, Alisa M.; Yang, Xiaohong R.
  3. SCIENTIFIC REPORTS. 2020, OCT 14; 10(1):
  1. 8.   The frequency of Ras mutations in cancer
  2. Prior, Ian A; Hood, Fiona E; Hartley,Jim
  3. Cancer research. 2020, JUL 15; 80(14): 2969-2974.
  1. 9.   Genetic and epigenetic intratumor heterogeneity impacts prognosis of lung adenocarcinoma
  2. Hua, Xing; Zhao, Wei; Pesatori, Angela C.; Consonni, Dario; Caporaso, Neil E.; Zhang, Tongwu; Zhu, Bin; Wang,Mingyi; Jones,Kristine; Hicks,Belynda; Song,Lei; Sampson, Joshua; Wedge, David C.; Shi, Jianxin; Landi, Maria Teresa
  3. NATURE COMMUNICATIONS. 2020, MAY 18; 11(1):
  1. 10.   Frequency of Pathogenic Germline Variants in Cancer-Susceptibility Genes in Patients With Osteosarcoma
  2. Mirabello, Lisa; Zhu, Bin; Koster, Roelof; Karlins,Eric; Dean, Michael; Yeager,Meredith; Gianferante, Matthew; Spector, Logan G; Morton, Lindsay M; Karyadi, Danielle; Robison, Leslie L; Armstrong, Gregory T; Bhatia, Smita; Song, Lei; Pankratz, Nathan; Pinheiro, Maisa; Gastier-Foster, Julie M; Gorlick, Richard; de Toledo, Silvia Regina Caminada; Petrilli, Antonio S; Patino-Garcia, Ana; Lecanda, Fernando; Gutierrez-Jimeno, Miriam; Serra, Massimo; Hattinger, Claudia; Picci, Piero; Scotlandi, Katia; Flanagan, Adrienne M; Tirabosco, Roberto; Amary, Maria Fernanda; Kurucu, Nilgün; Ilhan, Inci Ergurhan; Ballinger, Mandy L; Thomas, David M; Barkauskas, Donald A; Mejia-Baltodano, Gerardo; Valverde, Patricia; Hicks,Belynda; Zhu,Bin; Wang,Mingyi; Hutchinson,Amy; Tucker, Margaret; Sampson, Joshua; Landi, Maria T; Freedman, Neal D; Gapstur, Susan; Carter, Brian; Hoover, Robert N; Chanock, Stephen J; Savage, Sharon A
  3. JAMA oncology. 2020, Mar 19; 6(5): 724-734.
  1. 11.   Cancer classification of single cell gene expression data by neural network
  2. Kim, Bong-Hyun; Yu, Kijin; Lee, Peter C W
  3. Bioinformatics (Oxford, England). 2020, MAR 1; 36(5): 1360-1366.
  1. 12.   Two high-risk susceptibility loci at 6p25.3 and 14q32.13 for Waldenstrom macroglobulinemia
  2. McMaster, Mary L.; Berndt, Sonja; Zhang, Jianqing; Slager, Susan L.; Li,Shengchao; Vajdic, Claire M.; Smedby, Karin E.; Yan, Huihuang; Birmann, Brenda M.; Brown, Elizabeth E.; Smith, Alex; Kleinstern, Geffen; Fansler, Mervin M.; Mayr, Christine; Zhu,Bin; Chung,Charles; Park, Ju-Hyun; Burdette, Laurie; Hicks,Belynda; Hutchinson,Amy; Teras, Lauren R.; Adami, Hans-Olov; Bracci, Paige M.; McKay, James; Monnereau, Alain; Link, Brian K.; Vermeulen, Roel C. H.; Ansell, Stephen M.; Maria, Ann; Diver, W. Ryan; Melbye, Mads; Ojesina, Akinyemi; Kraft, Peter; Boffetta, Paolo; Clavel, Jacqueline; Giovannucci, Edward; Besson, Caroline M.; Canzia, Federico; Travis, Ruth C.; Vineis, Paolo; Weiderpass, Elisabete; Montalvan, Rebecca; Wang, Zhaoming; Yeager,Meredith; Becker, Nikolaus; Benavente, Yolanda; Brennan, Paul; Foretova, Lenka; Maynadie, Marc; Nieters, Alexandra; de Sanjose, Silvia; Staines, Anthony; Conde, Lucia; Riby, Jacques; Glimelius, Bengt; Hjalgrim, Henrik; Pradhan, Nisha; Feldman, Andrew L.; Novak, Anne J.; Lawrence, Charles; Bassig, Bryan A.; Lan, Qing; Zheng, Tongzhang; North, Kari E.; Tinker, Lesley F.; Cozen, Wendy; Severson, Richard K.; Hofmann, Jonathan N.; Zhang, Yawei; Jackson, Rebecca D.; Morton, Lindsay M.; Purdue, Mark P.; Chatterjee, Nilanjan; Offit, Kenneth; Cerhan, James R.; Chanock, Stephen J.; Rothman, Nathaniel; Vijai, Joseph; Goldin, Lynn R.; Skibola, Christine F.; Caporaso, Neil E.
  3. NATURE COMMUNICATIONS. 2018, OCT 10; 9(1): 4182.
  1. 13.   Alarmins and immunity
  2. Yang, De; Han, Zhen; Oppenheim, Joost
  3. Immunological Reviews. 2017, Nov; (1): 41-56.
  1. 14.   John Saunders' ZPA, Sonic hedgehog and digit identity - How does it really all work?
  2. Zhu, Jianjian; Mackem, Susan
  3. Developmental Biology. 2017, Sep 15; 429(2 Special Issue): 391-400.
  1. 15.   Data Descriptor: Matched computed tomography segmentation and demographic data for oropharyngeal cancer radiomics challenges
  2. Elhalawani, Hesham; Mohamed, Abdallah S. R.; White, Aubrey L.; Zafereo, James; Wong, Andrew J.; Berends, Joel E.; AboHashem, Shady; Williams, Bowman; Aymard, Jeremy M.; Kanwar, Aasheesh; Perni, Subha; Rock, Crosby D.; Cooksey, Luke; Campbell, Shauna; Ding, Yao; Lai, Stephen Y.; Marai, Elisabeta G.; Vock, David; Canahuate, Guadalupe M.; Freymann, John; Farahani, Keyvan; Kalpathy-Cramer, Jayashree; Fuller, Clifton D.
  3. SCIENTIFIC DATA. 2017, Jul 04; 4
  1. 16.   The population genetics of quechuas, the largest native south american group: Autosomal sequences, SNPs, and microsatellites evidence high level of diversity
  2. Scliar, M. O.; Soares-Souza, G. B.; Chevitarese, J.; Lemos, L.; Magalhaes, W. C. S.; Fagundes, N. J.; Bonatto, S. L.; Yeager, M.; Chanock, S. J.; Tarazona-Santos, E.
  3. American Journal of Physical Anthropology. 2012, Mar; 147(3): 443-451.
  1. 17.   Treatment of breast cancer cells with DNA demethylating agents leads to a release of Pol II stalling at genes with DNA-hypermethylated regions upstream of TSS
  2. Tao, Y. G.; Liu, S.; Briones, V.; Geiman, T. M.; Muegge, K.
  3. Nucleic Acids Research. 2011, Dec; 39(22): 9508-9520.
  1. 18.   Species-specific responses of Late Quaternary megafauna to climate and humans
  2. Lorenzen, E. D.; Nogues-Bravo, D.; Orlando, L.; Weinstock, J.; Binladen, J.; Marske, K. A.; Ugan, A.; Borregaard, M. K.; Gilbert, M. T. P.; Nielsen, R.; Ho, S. Y. W.; Goebel, T.; Graf, K. E.; Byers, D.; Stenderup, J. T.; Rasmussen, M.; Campos, P. F.; Leonard, J. A.; Koepfli, K. P.; Froese, D.; Zazula, G.; Stafford, T. W.; Aaris-Sorensen, K.; Batra, P.; Haywood, A. M.; Singarayer, J. S.; Valdes, P. J.; Boeskorov, G.; Burns, J. A.; Davydov, S. P.; Haile, J.; Jenkins, D. L.; Kosintsev, P.; Kuznetsova, T.; Lai, X. L.; Martin, L. D.; McDonald, H. G.; Mol, D.; Meldgaard, M.; Munch, K.; Stephan, E.; Sablin, M.; Sommer, R. S.; Sipko, T.; Scott, E.; Suchard, M. A.; Tikhonov, A.; Willerslev, R.; Wayne, R. K.; Cooper, A.; Hofreiter, M.; Sher, A.; Shapiro, B.; Rahbek, C.; Willerslev, E.
  3. Nature. 2011, Nov; 479(7373): 359-U195.
  1. 19.   Analysis of the ABCA4 Gene by Next-Generation Sequencing
  2. Zernant, J.; Schubert, C.; Im, K. M.; Burke, T.; Brown, C. M.; Fishman, G. A.; Tsang, S. H.; Gouras, P.; Dean, M.; Allikmets, R.
  3. Investigative Ophthalmology & Visual Science. 2011, Oct; 52(11): 8479-8487.
  1. 20.   Frequent mutations of chromatin remodeling genes in transitional cell carcinoma of the bladder
  2. Gui, Y. T.; Guo, G. W.; Huang, Y.; Hu, X. D.; Tang, A. F.; Gao, S. J.; Wu, R. H.; Chen, C.; Li, X. X.; Zhou, L.; He, M. H.; Li, Z. S.; Sun, X. J.; Jia, W. L.; Chen, J. N.; Yang, S. M.; Zhou, F. J.; Zhao, X. K.; Wan, S. Q.; Ye, R.; Liang, C. Z.; Liu, Z. S.; Huang, P. D.; Liu, C. X.; Jiang, H.; Wang, Y.; Zheng, H. C.; Sun, L.; Liu, X. W.; Jiang, Z. M.; Feng, D. F.; Chen, J.; Wu, S.; Zou, J.; Zhang, Z. F.; Yang, R. L.; Zhao, J.; Xu, C. J.; Yin, W. H.; Guan, Z. C.; Ye, J. X.; Zhang, H.; Li, J. X.; Kristiansen, K.; Nickerson, M. L.; Theodorescu, D.; Li, Y. R.; Zhang, X. Q.; Li, S. G.; Wang, J.; Yang, H. M.; Cai, Z. M.
  3. Nature Genetics. 2011, Sep; 43(9): 875-U84.
  1. 21.   Analysis of Mutants With Altered Shh Activity and Posterior Digit Loss Supports a Biphasic Model for Shh Function as a Morphogen and Mitogen
  2. Zhu, J. J.; Mackem, S.
  3. Developmental Dynamics. 2011, May; 240(5): 1303-1310.
  1. 22.   Similarity in Recombination Rate Estimates Highly Correlates with Genetic Differentiation in Humans
  2. Laayouni, H. L. H.; Montanucci, L.; Sikora, M.; Mele, M.; Dall'Olio, G. M.; Lorente-Galdos, B.; McGee, K. M.; Graffelman, J.; Awadalla, P.; Bosch, E.; Comas, D.; Navarro, A.; Calafell, F.; Casals, F.; Bertranpetit, J.
  3. Plos One. 2011, Mar; 6(3): 8.
  1. 23.   Identifying functional miRNA-mRNA regulatory modules with correspondence latent dirichlet allocation
  2. Liu, B.; Liu, L.; Tsykin, A.; Goodall, G. J.; Green, J. E.; Zhu, M.; Kim, C. H.; Li, J. Y.
  3. Bioinformatics. 2010, Dec; 26(24): 3105-3111.
  1. 24.   Protein expression profiles distinguish between experimental invasive pulmonary aspergillosis and Pseudomonas pneumonia
  2. Gonzales, D. A.; De Torre, C.; Wang, H. H.; Devor, C. B.; Munson, P. J.; Ying, S. X.; Kern, S. J.; Petraitiene, R.; Levens, D. L.; Walsh, T. J.; Suffredini, A. F.
  3. Proteomics. 2010, Dec; 10(23): 4270-4280.
  1. 25.   MyD88-mediated signaling prevents development of adenocarcinomas of the colon: role of interleukin 18
  2. Salcedo, R.; Worschech, A.; Cardone, M.; Jones, Y.; Gyulai, Z.; Dai, R. M.; Wang, E. N.; Ma, W.; Haines, D.; O'HUigin, C.; Marincola, F. M.; Trinchieri, G.
  3. Journal of Experimental Medicine. 2010, Aug 2; 207(8): 1625-1636.
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