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  1. 1.   Probabilistic single-particle cryo-EM ab initio 3D reconstruction in SIMPLE
  2. Van, Cong T S; Reboul, Cyril F; Caesar, Joseph J E; Meana-Pañeda, Rubén; Lountos,George; Deme, Justin C; Bryant, Owain J; Johnson, Steven; Piczak, Claire T; Valkov, Eugene; Lea, Susan M; Elmlund, Hans
  3. Acta Crystallographica. Section D, Structural biology. 2025, Aug 01;
  1. 2.   Antiproliferative Cassaine Diterpenoid Amines from the Leaves and Twigs of the Traditional Thai Medicinal Plant Erythrophleum teysmannii (Kurz) Craib
  2. Orfanoudaki,Maria; Wang,Dongdong; Du,Lin; Ruchirawat, Somsak; Kittakoop, Prasat; Grkovic,Tanja; Mahidol, Chulabhorn; O'Keefe,Barry
  3. Journal of Ethnopharmacology. 2025, Jun 25; 352: 120167.
  1. 3.   Programmed death-1 inhibition increases vaccine-induced T-cell infiltration in patients with prostate cancer
  2. Lassoued, Wiem; Madan, Ravi A; Xue, Elisabetta; Burnett, Daniel; Canubas, Kenneth D; Bailey, Shania; Marté, Jennifer L; Tsai, Yo-Ting; Donahue, Renee N; Turkbey, Ismail Baris; Papanicolau-Sengo, Antonios; Williams, Moniquea; Hankin, Amy; Manukyan,Manuk; Manu, Michell; Kang, Zhigang; Pritchard, Colin; Dahut, William; Karzai, Fatima; Schlom, Jeffrey; Sater, Sam; Pinto, Peter; Gulley, James L
  3. Journal for Immunotherapy of Cancer. 2025, Jun 22; 13(6):
  1. 4.   5hmC enhances PARP trapping and restores PARP inhibitor sensitivity in chemoresistant BRCA1/2-deficient cells
  2. Kharat, Suhas S; Mishra,Arun; Sengodan,Satheesh; Dierman, Dillon; Fox, Stephen D; Chazin, Walter J; Sharan,Shyam
  3. The Journal of Biological Chemistry. 2025, Jun 19; 110393.
  1. 5.   SARS-CoV-2 Receptor Binding Domain (RBD) Protein-Protein Conjugate Induces Similar or Better Antibody Responses as Spike mRNA in Rhesus Macaques
  2. Scaria, Puthupparampil V; Rowe, Christopher G; Kosik, Ivan; Hu, Zhe; Renn, Jonathan P; Alani, Nada; Kemanli, Pinar; Orr-Gonzalez, Sachy; Lambert, Lynn E; Adeyemi, Kayode; Doritchamou, Justin Y A; Barnafo, Emma K; Rausch, Kelly M; Muslinkina, Liya; Morrison, Robert D; Todd, John-Paul; Esposito,Dominic; Lees, Andrew; Yewdell, Jonathan; Duffy, Patrick E
  3. Vaccines. 2025, Jun 17; 13(6): 648.
  1. 6.   CRISPR screens and quantitative proteomics reveal remodeling of the aryl hydrocarbon receptor-driven proteome through PARP7 activity
  2. Gorelik, Andrii; Paulo, Joao A; Schroeter, Christina B; Lad, Melanie; Shurr, Abigail; Mastrokalou, Chara; Siddiqi, Samrah; Suyari, Osamu; Brognard,John; Walter, David; Matthews, Jason; Palmer, Timothy M; Gygi, Steven P; Ahel, Ivan
  3. Proceedings of the National Academy of Sciences of the United States of America. 2025, Jun 17; 122(24): e2424985122.
  1. 7.   Unraveling the mechanism of RNA duplex unwinding by DEAD-box helicase DDX3X: Insights into Cooperativity and roles of protomers
  2. Dharavath, Sudhaker; Song, He; Ji, Xinhua
  3. Biochemical and Biophysical Research Communications. 2025, Jun 13; 777: 152206.
  1. 8.   Benzosuberene and Tetracyclic Analogues as Colchicine Site Inhibitors of Tubulin Polymerization
  2. VanNatta, Jennifer M; Carlson, Graham J; Niu, Haichan; Bai, Ruoli; Wanniarachchi, Hashini I; Schuetze, Regan; Trawick, Mary Lynn; Hamel,Ernest; Mason, Ralph P; Pinney, Kevin G
  3. ACS Medicinal Chemistry Letters. 2025, Jun 12; 16(6): 1098-1107.
  1. 9.   Monotherapy with antibody 1C3 partially protects Ebola virus-exposed macaques
  2. Worwa, Gabriella; Davis, Carl W; Klim, Sarah E; Turcinovic, Jacquelyn; Agans, Krystle N; Borisevich, Viktoriya; Geisbert, Joan B; Cross, Robert W; Crane, Anya; Holbrook, Michael R; Sanchez-Lockhart, Mariano; Kugelman, Jeffrey R; Patino Galindo, Juan A; Geisbert, Thomas W; Ahmed, Rafi; Kuhn, Jens H; Ollmann Saphire, Erica; Palacios, Gustavo; Crozier,Ian
  3. Journal of Virology. 2025, Jun 10; e0029625.
  1. 10.   Large Congenital Melanocytic Nevus With LMNA::NTRK1 Fusion: Expanding Targeted Therapy Options for Congenital Nevi and Melanoma
  2. Nagarkar, Akanksha; Turbeville, Jackson; Hinshaw, Molly A; LeBoit, Philip E; Gagan, Jeffrey; Raffeld, Mark; Aldape, Kenneth; Shah, Niharika; Barr, Frederic G; Xi, Liqiang; Lee, Ina; Ferrone, Christina K; Pack, Svetlana D; Kaplan, Rosandra; Malone, Mary Frances Wedekind; Yohe,Marielle; Sargen, Michael R
  3. Journal of Cutaneous Pathology. 2025, Jun 03;
  1. 11.   A Biosynthetic and Taxonomic Atlas of the Global Lichen Holobiont
  2. Waterworth, Samantha C; Egbert, Susan; Sorensen, John; O'Keefe,Barry; Beutler,John
  3. Environmental Microbiology. 2025, Jun; 27(6): e70112.
  1. 12.   Association between prediagnostic serum metabolites and pancreatic ductal adenocarcinoma risk in two prospective cohorts
  2. Zhang, Ting; Moore, Steven C; Fu, Sheng; Wang,Xiaoyu; Albanes, Demetrius; Weinstein, Stephanie J; Yu, Kai; Stolzenberg-Solomon, Rachael Z
  3. International Journal of Cancer. 2025, May 22;
  1. 13.   m276-SL-PBD eradicates tumors and instigates long-lasting tumor-free survival in Merkel cell carcinoma preclinical models
  2. Kunika, Mikaela D; Kannan, Aarthi; Velasco, Graham J; Feng,Yang; Seaman,Steven; Das, Bhaba K; Pham, Dillon; Lambrecht, Nils; Zhao, Haibo; St Croix,Bradley; Gao, Ling
  3. iScience. 2025, May 16; 28(5): 112436.
  1. 14.   Sesquiterpene Coumarin Ethers and Phenylpropanoids from the Roots of Ferula drudeana, the Putative Anatolian Ecotype of the Silphion Plant
  2. Kuran, Fadil Kaan; Senadeera, Sarath P D; Wang,Dongdong; Hwang,Jiyeon; Goncharova,Ekaterina; Wilson,Jennifer; Wamiru, Antony; Wilson,Brice; Pruett, Nathanael; Du,Lin; Hoang, Chuong D; Beutler,John; Miski, Mahmut
  3. Molecules (Basel, Switzerland). 2025, Apr 25; 30(9): 1916.
  1. 15.   Protein Phosphatase 1 Regulatory Subunit PNUTS Prevents CENP-A Mislocalization and Chromosomal Instability
  2. Balachandra, Vinutha; Thomas, Makenzie; Shrestha, Roshan L; Sethi, Subhash Chandra; Chari,Rajagopal; Lin, Shinjen; Chih-Chien Cheng, Ken; Karpova, Tatiana S; Caplen, Natasha J; Basrai, Munira A
  3. Molecular and Cellular Biology. 2025, Apr 24; 1-13.
  1. 16.   Optimization of the PROTAC linker region of the proteasome substrate receptor hRpn13 rationalized structural modeling with molecular dynamics
  2. Lu,Xiuxiu; Sabbasani, Venkata R; Walters,Kylie; Swenson, Rolf E; Walters,Kylie
  3. The Journal of Biological Chemistry. 2025, Apr 18; 108520.
  1. 17.   A monomeric envelope glycoprotein cytoplasmic tail is sufficient for HIV-1 Gag lattice trapping and incorporation
  2. Groves, Nicholas S; Clark, Austin R; Aguilar, Rebekah S; Hikichi,Yuta; Kostenko, Anastasiia; Bruns, Merissa M; Aron, Alegra T; Freed,Eric; van Engelenburg, Schuyler B
  3. Journal of virology. 2025, Apr 15; e0210524.
  1. 18.   Duplicate entries in the Protein Data Bank: how to detect and handle them
  2. Wlodawer,Alexander; Dauter, Zbigniew; Rubach, Pawel; Minor, Wladek; Jaskolski, Mariusz; Jiang, Ziqiu; Jeffcott, William; Anosova, Olga; Kurlin, Vitaliy
  3. Acta Crystallographica. Section D, Structural Biology. 2025, Apr 01;
  1. 19.   Discovery of potent and selective PROTACs for the protein kinase LZK for the treatment of head and neck cancer
  2. Katerji,Meghri; Bergman, Knickole L; Lindberg, Eric; Rubin,Maxine; Funk, Amy L; Woodroofe, Carolyn C; Nyswaner, Katherine; Karpinska, Kamila; Serwa, Remigiusz; Marusiak, Anna; Swenson, Rolf E; Brognard,John
  3. The Journal of Biological Chemistry. 2025, Mar 27; 108452.
  1. 20.   HTLV-1 p13 Protein Hijacks Macrophage Polarization and Promotes T-Cell Recruitment
  2. Moles, Ramona; Omsland, Maria; Pise-Masison, Cynthia A; Subleski,Jeffrey; McVicar,Daniel; Sarkis, Sarkis; Gutowska, Anna; Schifanella, Luca; Doster, Melvin; Washington-Parks, Robyn; Ciminale, Vincenzo; Franchini, Genoveffa
  3. Viruses. 2025, Mar 26; 17(4): 471.
  1. 21.   The human oral microbiome and risk of colorectal cancer within three prospective cohort studies in the United States
  2. Vogtmann, Emily; Yano, Yukiko; Zouiouich, Semi; Hua,Xing; Wan, Yunhu; Purandare, Vaishnavi; Li, Shilan; Dagnall,Casey; Jones, Kristine; Hicks,Belynda; Hutchinson,Amy; Caporaso, J Gregory; Wheeler, William; Huang, Wen-Yi; Freedman, Neal D; Sandler, Dale P; Beane Freeman, Laura E; Liao, Linda M; Gail, Mitchell H; Shi, Jianxin; Abnet, Christian C; Sinha, Rashmi
  3. Cancer. 2025, Mar 15; 131(6): e35802.
  1. 22.   Noncanonical circRNA biogenesis driven by alpha and gamma herpesviruses
  2. Dremel, Sarah E; Koparde,Vishal; Arbuckle, Jesse H; Hogan, Chad H; Kristie, Thomas M; Krug, Laurie T; Conrad, Nicholas K; Ziegelbauer, Joseph M
  3. The EMBO Journal. 2025, Mar 03;
  1. 23.   A robust fluorogenic substrate for chikungunya virus protease (nsP2) activity
  2. Makhaik, Sparsh; Rut, Wioletta; Choudhary, Shruti; Upadhyay, Tulsi; Hao, Chenzhou; Westberg, Michael; Bobst, Cedric; Yoo,Euna; Fejzo, Jasna; Lin, Michael Z; Bogyo, Matthew; Thompson, Paul; Drag, Marcin; Hardy, Jeanne A
  3. Protein Science : a publication of the Protein Society. 2025, Mar; 34(3): e70069.
  1. 24.   Isolation and structure elucidation of Dm-CVNH, a new cyanovirin-N homolog with activity against SARS-CoV-2 and HIV-1
  2. Orfanoudaki,Maria; Krumpe,Lauren; Shenoy, Shilpa R; Wilson,Jennifer; Guszczynski, Tad; Henrich,Curtis; Temme,Joel; Gildersleeve,Jeffrey; Molina-Molina, Elisa; Erkizia, Itziar; Blanco, Julià; Izquierdo-Useros, Nuria; Montiero, Fabio; Tanuri, Amilcar; Rech, Elibio; O'Keefe,Barry
  3. The Journal of Biological Chemistry. 2025, Feb 14; 108319.
  1. 25.   Modulation of the Substrate Preference of a MYST Acetyltransferase by a Scaffold Protein
  2. Sengupta, Raghuvir N; Brodsky, Oleg; Bingham, Patrick; Diehl, Wade C; Ferre, RoseAnn; Greasley, Samantha E; Johnson, Eric; Kraus, Michelle; Lieberman, Whitney; Meier,Jordan; Paul, Thomas A; Maegley, Karen A
  3. The Journal of Biological Chemistry. 2025, Feb 03; 108262.
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