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  1. 1.   Genome sequence, transcriptome, and annotation of rodent malaria parasite Plasmodium yoelii nigeriensis N67
  2. Zhang, Cui; Oguz,Cihan; Huse, Sue; Xia, Lu; Wu, Jian; Peng, Yu-Chih; Smith, Margaret; Chen, Jack; Long, Carole A; Lack,Justin; Su, Xin-Zhuan
  3. BMC Genomics. 2021, Apr 26; 22(1): 303.
  1. 2.   Characterization of and isolation methods for plant leaf nanovesicles and small extracellular vesicles
  2. Liu, Yuan; Wu, Sherry; Koo, Yeonjong; Yang, An; Dai, Yanwan; Khant,Htet; Osman, Samantha; Chowdhury, Mamur; Wei, Haichao; Li, Yang; Court, Karem; Hwang, Elaine; Wen, Yunfei; Dasari, Santosh Kumar; Nguyen, Michael; Tang, E Chia-Cheng; Chehab, E Wassim; De Val Alda,Natalia; Braam, Janet; Sood, Anil K
  3. Nanomedicine : nanotechnology, biology, and medicine. 2020, OCT; 29: 102271.
  1. 3.   Target identification among known drugs by deep learning from heterogeneous networks
  2. Zeng, Xiangxiang; Zhu, Siyi; Lu, Weiqiang; Liu, Zehui; Huang, Jin; Zhou, Yadi; Fang, Jiansong; Huang, Yin; Guo, Huimin; Li, Lang; Trapp, Bruce D.; Nussinov,Ruth; Eng, Charis; Loscalzo, Joseph; Cheng, Feixiong
  3. CHEMICAL SCIENCE. 2020, Feb 21; 11(7): 1775-1797.
  1. 4.   Involvement of the N Domain Residues E34, K35, and R38 in the Functionally Active Structure of Escherichia coli Lon Protease
  2. Andrianova, A. G.; Kudzhaev, A. M.; Abrikosova, V. A.; Gustchina,Alla; Smirnov, I. V.; Rotanova, T. V.
  3. Acta Naturae. 2020, Oct-Dec; 12(4): 86-97.
  1. 5.   Cancer biomarker discovery: Opportunities and pitfalls in analytical methods
  2. Issaq, H. J.; Waybright, T. J.; Veenstra, T. D.
  3. Electrophoresis. 2011, Apr; 32(9): 967-975.
  1. 6.   Insight into the Salivary Transcriptome and Proteome of Dipetalogaster maxima
  2. Assumpcao, T. C. F.; Charneau, S.; Santiago, P. B. M.; Francischetti, I. M. B.; Meng, Z. J.; Araujo, C. N.; Pham, V.; Queiroz, R. M. L.; de Castro, C. N.; Ricart, C. A.; Santana, J. M.; Ribeiro, J. M. C.
  3. Journal of Proteome Research. 2011, Feb; 10(2): 669-679.
  1. 7.   Proteomic Analysis of Nuclei Isolated from Cancer Cell Lines Treated with Indenoisoquinoline NSC 724998, a Novel Topoisomerase I Inhibitor
  2. Han, B. N.; Stockwin, L. H.; Hancock, C.; Yu, S. X.; Hollingshead, M. G.; Newton, D. L.
  3. Journal of Proteome Research. 2010, Aug 6; 9(8): 4016-4027.
  1. 8.   Electrophoresis and liquid chromatography/tandem mass spectrometry in disease biomarker discovery
  2. Issaq, H. J.; Blonder, J.
  3. Journal of Chromatography B-Analytical Technologies in the Biomedical and Life Sciences. 2009 877(13): 1222-1228.
  1. 9.   Similar binding sites and different partners: Implications to shared proteins in cellular pathways
  2. Keskin, O.; Nussinov, R.
  3. Structure. 2007, Mar; 15(3): 341-354.
  1. 10.   Multiplexed immunofluoreseence microscopy for the interrogation of cellular protein complexes
  2. Zhou, M.; Veenstra, T. D.
  3. Expert Review of Proteomics. 2006, Dec; 3(6): 581-583.
  1. 11.   Proteomic analysis of plasma membrane from hypoxia-adapted malignant melanoma
  2. Stockwin, L. H.; Blonder, J.; Bumke, M. A.; Lucas, D. A.; Chan, K. C.; Conrads, T. P.; Issaq, H. J.; Veenstra, T. D.; Newton, D. L.; Rybak, S. M.
  3. Journal of Proteome Research. 2006, Nov; 5(11): 2996-3007.
  1. 12.   Mass spectrometric analysis of formalin-fixed paraffin-embedded tissue: Unlocking the proteome within
  2. Hood, B. L.; Conrads, T. P.; Veenstra, T. D.
  3. Proteomics. 2006, Jul; 6(14): 4106-4114.
  1. 13.   Analysis of albumin-associated peptides and proteins from ovarian cancer patients
  2. Lowenthal, M. S.; Mehta, A. I.; Frogale, K.; Bandle, R. W.; Araujo, R. P.; Hood, B. L.; Veenstra, T. D.; Conrads, T. P.; Goldsmith, P.; Fishman, D.; Petricoin, E. F.; Liotta, L. A
  3. Clinical Chemistry. 2005, OCT; 51(10): 1933-1945.
  1. 14.   Cancer proteomics: many technologies, one goal
  2. Conrads, T. P.; Hood, B. L.; Petricoin, E. F.; Liotto, L. A.; Veenstra, T. D.
  3. Expert Review of Proteomics. 2005, Oct; 2(5): 693-703.
  1. 15.   Protein-protein interactions: organization, cooperativity and mapping in a bottom-up Systems Biology approach
  2. Keskin, O.; Ma, B. Y.; Rogale, K.; Gunasekaran, K.; Nussinov, R.
  3. Physical Biology. 2005, JUN; 2(2): S24-S35.
  1. 16.   Low molecular weight proteomic information distinguishes metastatic from benign pheochromocytoma
  2. Brouwers, F. M.; Petricoin, E. F.; Ksinantova, L.; Breza, J.; Rajapakse, V.; Ross, S.; Johann, D.; Mannelli, M.; Shulkin, B. L.; Kvetnansky, R.; Eisenhofer, G.; Walther, M. M.; Hitt, B. A.; Conrads, T. P.; Veenstra, T. D.; Mannion, D. P.; Wall, M. R.; Wolfe, G. M.; Fusaro, V. A.; Liotta, L. A.; Pacak, K.
  3. Endocrine-Related Cancer. 2005, JUN; 12(2): 263-272.
  1. 17.   Multidimensional separation of peptides for effective proteomic analysis
  2. Issaq, H. J.; Chan, K. C.; Janini, G. M.; Conrads, T. P.; Veenstra, T. D.
  3. Journal of Chromatography B-Analytical Technologies in the Biomedical and Life Sciences. 2005, MAR 5; 817(1): 35-47.
  1. 18.   Enrichment of low-molecular-weight proteins from biofluids for biomarker discovery
  2. Chertov, O.; Simpson, J. T.; Biragyn, A.; Conrads, T. P.; Veenstra, T. D.; Fisher, R. J.
  3. Expert Review of Proteomics. 2005, FEB; 2(1): 139-145.
  1. 19.   Investigation of the mouse serum proteome
  2. Hood, B. L.; Zhou, M.; Chan, K. C.; Lucas, D. A.; Kim, G. J.; Issaq, H. J.; Veenstra, T. D.; Conrads, T. P.
  3. Journal of Proteome Research. 2005, SEP-OCT; 4(5): 1561-1568.
  1. 20.   Wortmannin, a widely used phosphoinositide 3-kinase inhibitor, also potently inhibits mammalian polo-like kinase
  2. Liu, Y. S.; Shreder, K. R.; Gai, W. Z.; Corral, S.; Ferris, D. K.; Rosenblum, J. S.
  3. Chemistry & Biology. 2005, JAN; 12(1): 99-107.
  1. 21.   Biomarkers: Mining the biofluid proteome
  2. Veenstra, T. D.; Conrads, T. P.; Hood, B. L.; Avellino, A. M.; Ellenbogen, R. G.; Morrison, R. S.
  3. Molecular & Cellular Proteomics. 2005 4(4): 409-418.
  1. 22.   Quantitative profiling of the detergent-resistant membrane proteome of Iota-b toxin induced Vero cells
  2. Blonder, J.; Hale, M. L.; Chan, K. C.; Yu, L. R.; Lucas, D. A.; Conrads, T. P.; Zhou, M.; Popoff, M. R.; Issaq, H. J.; Stiles, B. G.; Veenstra, T. D.
  3. Journal of Proteome Research. 2005, MAR-APR; 4(2): 523-531.
  1. 23.   Proteomic patterns for early cancer detection
  2. Veenstra, T. D.; Prieto, D. A.; Conrads, T. P.
  3. Drug Discovery Today. 2004, OCT 15; 9(20): 889-897.
  1. 24.   Human ORFeome version 1.1: A platform for reverse proteomics
  2. Rual, J. F.; Hirozane-Kishikawa, T.; Hao, T.; Bertin, N.; Li, S. M.; Dricot, A.; Li, N.; Rosenberg, J.; Lamesch, P.; Vidalain, P. O.; Clingingsmith, T. R.; Hartley, J. L.; Esposito, D.; Cheo, D.; Moore, T.; Simmons, B.; Sequerra, R.; Bosak, S.; Doucette-Stamm, L.; Le Peuch, C.; Vandenhaute, J.; Cusick, M. E.; Albala, J. S.; Hill, D. E.; Vidal, M.
  3. Genome Research. 2004, OCT; 14(10B): 2128-2135.
  1. 25.   Global analysis of the cortical neuron proteome
  2. Yu, L. R.; Conrads, T. P.; Uo, T.; Kinoshita, Y.; Morrison, R. S.; Lucas, D. A.; Chan, K. C.; Blonder, J.; Issaq, H. J.; Veenstra, T. D.
  3. Molecular & Cellular Proteomics. 2004, SEP; 3(9): 896-907.
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