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  1. 1.   Divergent populations of HIV-infected naïve and memory CD4+ T-cell clones in children on antiretroviral therapy
  2. Katusiime, Mary Grace; Neer,Victoria; Guo, Shuang; Patro,Sean; Wang,Wenjie; Luke,Brian; Capoferri,Adam; Wu,Xiaolin; Horner, Anna M; Rausch,Jason; Chahroudi, Ann; Mavigner, Maud; Kearney,Mary
  3. The Journal of Clinical Investigation. 2025, Mar 06;
  1. 2.   Data imbalance in drug response prediction: multi-objective optimization approach in deep learning setting
  2. Narykov, Oleksandr; Zhu, Yitan; Brettin, Thomas; Evrard,Yvonne; Partin, Alexander; Xia, Fangfang; Shukla, Maulik; Vasanthakumari, Priyanka; Doroshow, James H; Stevens, Rick L
  3. Briefings in Bioinformatics. 2025, Mar 04; 26(2):
  1. 3.   The integrated stress response regulates 18S nonfunctional rRNA decay in mammals
  2. Coria,Aaztli; Shah,Akruti; Shafieinouri,Mohammad; Taylor, Sarah J; Orgebin,Emilien; Guiblet,Wilfried; Miller,Jennifer; Sharma, Indra Mani; Wu, Colin Chih-Chien
  3. Molecular Cell. 2025, Feb 07;
  1. 4.   Proteomic and serologic assessments of responses to mRNA-1273 and BNT162b2 vaccines in human recipient sera
  2. Hickey,Thomas; Mudunuri,Uma; Hempel,Heidi; Kemp,Troy; Roche,Nancy; Talsania, Keyur; Sellers, Brian A; Cherry, James M; Pinto,Ligia
  3. Frontiers in Immunology. 2025, Jan 27; 15: 1502458.
  1. 5.   Fun in the sun: ribosomes defend against UV irradiation
  2. Coria,Aaztli; Orgebin,Emilien; Wu,Colin
  3. Trends in Cell Biology. 2025, Jan 16;
  1. 6.   Single-cell transcriptional analysis of murine norovirus infection in a human intestinal cell line
  2. Matsushima, Yuki; Levenson, Eric A; Chaimongkol, Natthawan; Harris, Loyall; Zhao,Yongmei; Turan,Sevilay; Otaizo-Carrasquero, Francisco; Ganesan, Sundar; Hornick, Katherine M; Martens, Craig; Sosnovtsev, Stanislav V; Green, Kim Y
  3. Journal of Virology. 2024, Oct 30; e0161724.
  1. 7.   "A randomized double-blinded trial to assess recurrence of systemic allergic reactions following COVID-19 mRNA vaccination"
  2. Khalid, Muhammad B; Zektser, Ellen; Chu,Eric; Li, Min; Utoh, Joanna; Ryan, Patrick; Loving, Hanna S; Harb, Roa; Kattappuram, Robbie; Chatman, Lindsay; Hartono, Stella; Claudio-Etienne, Estefania; Sun, Guangping; Feener, Edward P; Li, Zhongbo; Lai, Samuel K; Le, Quang; Schwartz, Lawrence B; Lyons, Jonathan J; Komarow, Hirsh; Zhou, Zhao-Hua; Raza, Haniya; Pao, Maryland; Laky, Karen; Holland, Steven M; Brittain, Erica; Frischmeyer-Guerrerio, Pamela A
  3. The journal of Allergy and Clinical Immunology. . 2024, Jun; 153(6): 1634-1646.
  1. 8.   Metabolism-focused CRISPR screen unveils mitochondrial pyruvate carrier 1 as a critical driver for PARP inhibitor resistance in lung cancer
  2. Furusawa, Takashi; Cavero, Renzo; Liu, Yue; Li, Haojian; Xu,Xia; Andresson,Thorkell; Reinhold, William; White, Olivia; Boufraqech, Myriem; Meyer,Thomas; Hartmann, Oliver; Diefenbacher, Markus E; Pommier, Yves; Weyemi, Urbain
  3. Molecular Carcinogenesis. 2024, Feb 27;
  1. 9.   Viral and Host Factors Are Associated With Mortality in Hospitalized Patients With COVID-19
  2. Aggarwal, Neil R; Nordwall, Jacquie; Braun, Dominique L; Chung, Lucy; Coslet, Jordan; Der, Tatyana; Eriobu, Nnakelu; Ginde, Adit A; Hayanga, Awori J; Highbarger, Helene; Holodniy, Mark; Horcajada, Juan P; Jain, Mamta K; Kim, Kami; Laverdure, Sylvain; Lundgren, Jens; Natarajan, Ven; Nguyen, Hien H; Pett, Sarah L; Phillips, Andrew; Poulakou, Garyphallia; Price, David A; Robinson, Philip; Rogers, Angela J; Sandkovsky, Uriel; Shaw-Saliba, Katy; Sturek, Jeffrey M; Trautner, Barbara W; Waters, Michael; Reilly, Cavan
  3. Clinical Infectious Diseases : an official publication of the Infectious Diseases Society of America. 2024, Feb 20;
  1. 10.   A Comprehensive Investigation of Active Learning Strategies for Conducting Anti-Cancer Drug Screening
  2. Vasanthakumari, Priyanka; Zhu, Yitan; Brettin, Thomas; Partin, Alexander; Shukla, Maulik; Xia, Fangfang; Narykov, Oleksandr; Weil,Michael; Stevens, Rick L
  3. Cancers. 2024, Jan 26; 16(3):
  1. 11.   Transcriptionally-active "defective" HIV-1 proviruses and their association with immunological non-response to antiretroviral therapy
  2. Scrimieri, Francesca; Bastian, Estella; Smith, Mindy; Rehm, Catherine A; Morse, Caryn; Kuruppu, Janaki; McLaughlin, Mary; Chang,Weizhong; Sereti, Irini; Kovacs, Joseph A; Lane, H Clifford; Imamichi, Hiromi
  3. The Journal of Infectious Diseases. 2024, Jan 16;
  1. 12.   Immune cell phenotype and function patterns across the life course in individuals from rural Uganda
  2. Nalwoga, Angela; Nakibuule, Marjorie; Roshan,Romin; Kwizera Mbonye, Moses; Miley,Wendell; Whitby,Denise; Newton, Robert; Rochford, Rosemary; Cose, Stephen
  3. Frontiers in Immunology. 2024 15: 1356635.
  1. 13.   Extraordinary Titer and Broad Anti-SARS-CoV-2 Neutralization Induced by Stabilized RBD Nanoparticles from Strain BA.5
  2. Wang, Zhantong; Zhang, Baoshan; Ou, Li; Qiu, Qi; Wang, Lingshu; Bylund, Tatsiana; Kong, Wing-Pui; Shi, Wei; Tsybovsky,Yaroslav; Wu, Lingyuan; Zhou, Qiong; Chaudhary, Ridhi; Choe, Misook; Dickey, Thayne H; El Anbari, Mohammed; Olia, Adam S; Rawi, Reda; Teng, I-Ting; Wang, Danyi; Wang, Shuishu; Tolia, Niraj H; Zhou, Tongqing; Kwong, Peter D
  3. Vaccines. 2023, Dec 28; 12(1):
  1. 14.   HIV-1 Transcription Inhibition Using Small RNA-Binding Molecules
  2. Khatkar, Pooja; Mensah, Gifty; Ning, Shangbo; Cowen, Maria; Kim, Yuriy; Williams, Anastasia; Abulwerdi, Fardokht A; Zhao, Yunjie; Zeng, Chen; Le Grice, Stuart F J; Kashanchi, Fatah
  3. Pharmaceuticals (Basel, Switzerland). 2023, Dec 25; 17(1):
  1. 15.   Integration of Computational Docking into Anti-Cancer Drug Response Prediction Models
  2. Narykov, Oleksandr; Zhu, Yitan; Brettin, Thomas; Evrard,Yvonne; Partin, Alexander; Shukla, Maulik; Xia, Fangfang; Clyde, Austin; Vasanthakumari, Priyanka; Doroshow, James H; Stevens, Rick L
  3. Cancers. 2023, Dec 21; 16(1):
  1. 16.   Enhancing Anti-SARS-CoV-2 Neutralizing Immunity by Genetic Delivery of Enveloped Virus-like Particles Displaying SARS-CoV-2 Spikes
  2. Yang, Yongping; Kong, Wing-Pui; Liu, Cuiping; Ruckwardt, Tracy J; Tsybovsky,Yaroslav; Wang, Lingshu; Wang, Shuishu; Biner, Daniel W; Chen, Man; Liu, Tracy; Merriam, Jonah; Olia, Adam S; Ou, Li; Qiu, Qi; Shi, Wei; Stephens,Tyler; Yang, Eun Sung; Zhang, Baoshan; Zhang, Yi; Zhou, Qiong; Rawi, Reda; Koup, Richard A; Mascola, John R; Kwong, Peter D
  3. Vaccines. 2023, Aug 31; 11(9):
  1. 17.   A Zpr1 co-chaperone mediates folding of eukaryotic translation elongation factor 1A via a GTPase cycle
  2. McQuown, Alexander J; Nelliat, Anjali R; Reif, Dvir; Sabbarini, Ibrahim M; Membreno, Britnie Santiago; Wu,Colin; Denic, Vladimir
  3. Molecular Cell. 2023, Aug 16; 81(17): 3108-3122.
  1. 18.   Pan-cancer analysis of post-translational modifications reveals shared patterns of protein regulation
  2. Geffen, Yifat; Anand, Shankara; Akiyama, Yo; Yaron, Tomer M; Song, Yizhe; Johnson, Jared L; Govindan, Akshay; Babur, Özgün; Li, Yize; Huntsman, Emily; Wang, Liang-Bo; Birger, Chet; Heiman, David I; Zhang, Qing; Miller, Mendy; Maruvka, Yosef E; Haradhvala, Nicholas J; Calinawan, Anna; Belkin, Saveliy; Kerelsky, Alexander; Clauser, Karl R; Krug, Karsten; Satpathy, Shankha; Payne, Samuel H; Mani, D R; Gillette, Michael A; Dhanasekaran, Saravana M; Thiagarajan,Mathangi; Mesri, Mehdi; Rodriguez, Henry; Robles, Ana I; Carr, Steven A; Lazar, Alexander J; Aguet, François; Cantley, Lewis C; Ding, Li; Getz, Gad
  3. Cell. 2023, Aug 09;
  1. 19.   SMYD3 represses tumor-intrinsic interferon response in HPV-negative squamous cell carcinoma of the head and neck
  2. Nigam, Nupur; Bernard, Benjamin; Sevilla, Samantha; Kim, Sohyoung; Dar, Mohd Saleem; Tsai, Daniel; Robbins, Yvette; Burkitt, Kyunghee; Sievers, Cem; Allen, Clint T; Bennett, Richard L; Tettey, Theophilus T; Carter, Benjamin; Rinaldi, Lorenzo; Lingen, Mark W; Sater, Houssein; Edmondson, Elijah F; Moshiri, Arfa; Saeed, Abbas; Cheng, Hui; Luo, Xiaolin; Brennan, Kevin; Koparde, Vishal; Chen, Chen; Das, Sudipto; Andresson,Thorkell; Abdelmaksoud,Abdalla; Murali, Madhavi; Sakata, Seiji; Takeuchi, Kengo; Chari,Raj; Nakamura, Yusuke; Uppaluri, Ravindra; Sunwoo, John B; Van Waes, Carter; Licht, Jonathan D; Hager, Gordon L; Saloura, Vassiliki
  3. Cell Reports. 2023, Jul 17; 42(7): 112823.
  1. 20.   IL-4, IL-13 and IFN-gamma induced genes in highly purified human neutrophils
  2. Kummola, Laura; Salomaa, Tanja; Ortutay, Zsuzsanna; Savan, Ram; Young,Howard; Junttila, Ilkka S
  3. Cytokine. 2023, Feb 19; 164: 156159.
  1. 21.   Vaccination Ameliorates Cellular Inflammatory Responses in SARS-CoV-2 Breakthrough Infections
  2. Huapaya, Julio A; Higgins, Jeanette; Kanth, Shreya; Demirkale, Cumhur; Gairhe, Salina; Aboye, Etsubdink A; Regenold, David; Sahagun, S J; Pastor, Gloria; Swaim, Doris; Dewar,Robin; Rehman,Tauseef; Highbarger,Helene; Lallemand,Perrine; Laverdure,Sylvain; Adelsberger, Joseph; Rupert,Adam; Li, Willy; Krack, Janell; Teferi, Gebeyehu; Kuruppu, Janaki; Strich, Jeffrey R; Davey, Richard; Childs, Richard; Chertow, Daniel; Kovacs, Joseph A; Barnett, Christopher; Torabi-Parizi, Parizad; Suffredini, Anthony F
  3. The Journal of Infectious Diseases. 2023, Feb 18;
  1. 22.   Step-dose IL-7 treatment promotes systemic expansion of T cells and alters immune cell landscape in blood and lymph nodes
  2. Pandit,Hrishikesh; Valentin, Antonio; Angel, Matthew; Deleage,Claire; Bergamaschi, Cristina; Bear,Jenifer; Sowder, Raymond; Felber,Barbara; Pavlakis,George
  3. iScience. 2023, Feb 17; 26(2): 105929.
  1. 23.   Zinc-finger protein Zpr1 is a bespoke chaperone essential for eEF1A biogenesis
  2. Sabbarini, Ibrahim M; Reif, Dvir; McQuown, Alexander J; Nelliat, Anjali R; Prince, Jeffrey; Santiago Membreno,Britnie; Wu,Colin; Murray, Andrew W; Denic, Vladimir
  3. Molecular Cell. 2023, Jan 19; 83(2): 252-265.
  1. 24.   3'-[18F]fluoro-3'-deoxythymidine ([18F]FLT) Positron Emission Tomography as an In Vivo Biomarker of inhibition of CDK 4/6-Rb pathway by Palbociclib in a patient derived bladder tumor
  2. Tatum, James L; Kalen,Joseph; Jacobs, Paula M; Riffle,Lisa; James,Amy; Thang,Lai; Sanders,Chelsea; Hollingshead,Melinda; Basuli, Falguni; Shi, Jianfeng; Doroshow, James H
  3. Journal of Translational Medicine. 2022, Aug 18; 20(1): 375.
  1. 25.   Immune correlates of HIV-1 reservoir cell decline in early-treated infants
  2. Hartana, Ciputra Adijaya; Garcia-Broncano, Pilar; Rassadkina, Yelizaveta; Lian, Xiaodong; Jiang, Chenyang; Einkauf, Kevin B; Maswabi, Kenneth; Ajibola, Gbolahan; Moyo, Sikhulile; Mohammed, Terence; Maphorisa, Comfort; Makhema, Joseph; Yuki,Yuko; Martin,Pat; Bennett, Kara; Jean-Philippe, Patrick; Viard,Mathias; Hughes, Michael D; Powis, Kathleen M; Carrington,Mary; Lockman, Shahin; Gao, Ce; Yu, Xu G; Kuritzkes, Daniel R; Shapiro, Roger; Lichterfeld, Mathias
  3. Cell Reports. 2022, Jul 19; 40(3): 111126.
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