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  1. 1.   Topological structure determination of RNA using small angle X-ray scattering
  2. Bhandari, Yuba; Fan, Lixin; Fang, Xianyang; Zaki, George; Stahlberg, Eric; Jiang, Wei; Schwieters, Charles D; Stagno, Jason; Wang, Yun-Xing
  3. Journal of molecular biology. 2017, Nov 24; 429(23): 3635-3649.
  1. 2.   Initiation complex dynamics direct the transitions between distinct phases of early HIV reverse transcription
  2. Liu, S. X.; Harada, B. T.; Miller, J. T.; Le Grice, S. F. J.; Zhuang, X. W.
  3. Nature Structural & Molecular Biology. 2010, Dec; 17(12): 1453-U83.
  1. 3.   Graphical exploratory data analysis of RNA secondary structure dynamics predicted by the massively parallel genetic algorithm
  2. Shapiro, B. A.; Kasprzak, W.; Grunewald, C.; Aman, J.
  3. Journal of Molecular Graphics & Modelling. 2006, Dec; 25(4): 514-531.
  1. 4.   Correlated mutations: Advances and limitations. A study on fusion proteins and on the cohesin-dockerin families
  2. Halperin, I.; Wolfson, H.; Nussinov, R.
  3. Proteins-Structure Function and Bioinformatics. 2006, Jun; 63(4): 832-845.
  1. 5.   Structural differentiation of the HIV-1 poly(A) signals
  2. Gee, A. H.; Kasprzak, W.; Shapiro, B. A.
  3. Journal of Biomolecular Structure & Dynamics. 2006, FEB; 23(4): 417-428.
  1. 6.   A base-specific recognition signal in the 5 ' consensus sequence of rotavirus plus-strand RNAs promotes replication of the double-stranded RNA genome segments
  2. Tortorici, M. A.; Shapiro, R. A.; Patton, J. T.
  3. Rna-a Publication of the Rna Society. 2006, JAN; 12(1): 133-146.
  1. 7.   RNA secondary structure prediction from sequence alignments using a network of k-nearest neighbor classifiers
  2. Bindewald, E.; Shapiro, B. A.
  3. Rna-a Publication of the Rna Society. 2006 12(3): 342-352.
  1. 8.   Structural and functional analysis of the RNA transport element, a member of an extensive family present in the mouse genome
  2. Smulevitch, S.; Michalowski, D.; Zolotukhin, A. S.; Schneider, R.; Bear, J.; Roth, P.; Pavlakis, G. N.; Felber, B. K.
  3. Journal of Virology. 2005, FEB; 79(4): 2356-2365.
  1. 9.   Structural polymorphism of the HIV-1 leader region explored by computational methods
  2. Kasprzak, W.; Bindewald, E.; Shapiro, B. A.
  3. Nucleic Acids Research. 2005 33(22): 7151-7163.
  1. 10.   In the beginning: Initiation of minus strand DNA synthesis in retroviruses and LTR-containing retrotransposons
  2. Le Grice, S. F. J.
  3. Biochemistry. 2003 42(49): 14349-14355.
  1. 11.   Discovering well-ordered folding patterns in nucleotide sequences
  2. Le, S. Y.; Chen, J. H.; Konings, D.; Maizel, J. V.
  3. Bioinformatics. 2003 19(3): 354-361.
  1. 12.   Mutating conserved residues in the ribonuclease H domain of Ty3 reverse transcriptase affects specialized cleavage events
  2. Lener, D.; Budihas, S. R.; Le Grice, S. F. J.
  3. Journal of Biological Chemistry. 2002 277(29): 26486-26495.
  1. 13.   A data mining approach to discover unusual folding regions in genome sequences
  2. Le, S. Y.; Liu, W. M.; Maizel, J. V.
  3. Knowledge-Based Systems. 2002 15(4, Special Issue): 243-250.
  1. 14.   Local thermodynamic stability scores are well represented by a non-central student's t distribution
  2. Le, S. Y.; Liu, W. M.; Chen, J. H.; Maizel, J. V.
  3. Journal of Theoretical Biology. 2001 210(4): 411-423.
  1. 15.   Structural determinants of murine leukemia virus reverse transcriptase that affect the frequency of template switching
  2. Svarovskaia, E. S.; Delviks, K. A.; Hwang, C. K.; Pathak, V. K.
  3. Journal of Virology. 2000 74(15): 7171-7178.
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