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  1. 1.   Impacts of the SOAT1 genetic variants and protein expression on HBV-related hepatocellular carcinoma
  2. Chen, Yulong; Yang, Xunjun; Chen, Yao; Chen, Guorong; Winkler,Cheryl; An,Ping; Lyu, Jianxin
  3. BMC cancer. 2021, May 26; 21(1):
  1. 2.   Host and Viral Genetic Variation in HBV-Related Hepatocellular Carcinoma
  2. An, Ping; Xu, Jinghang; Yu, Yanyan; Winkler, Cheryl
  3. FRONTIERS IN GENETICS. 2018, Jul 19; 9
  1. 3.   Comprehensive and Integrated Genomic Characterization of Adult Soft Tissue Sarcomas
  2. Lazar, Alexander J.; McLellan, Michael D.; Bailey, Matthew H.; Miller, Christopher A.; Appelbaum, Elizabeth L.; Cordes, Matthew G.; Fronick, Catrina C.; Fulton, Lucinda A.; Fulton, Robert S.; Mardis, Elaine R.; Schmidt, Heather K.; Wong, Winghing; Wilson, Richard K.; Yellapantula, Venkata; Radenbaugh, Amie J.; Hoadley, Katherine A.; Hayes, D. Neil; Parker, Joel S.; Wilkerson, Matthew D.; Auman, J. Todd; Balu, Saianand; Bodenheimer, Tom; Hoyle, Alan P.; Jefferys, Stuart R.; Jones, Corbin D.; Lehmann, Kjong-Van; Meng, Shaowu; Mieczkowski, Piotr A.; Mose, Lisle E.; Perou, Charles M.; Roach, Jeffrey; Senbabaoglu, Yasin; Shi, Yan; Simons, Janae V.; Skelly, Tara; Soloway, Matthew G.; Tan, Donghui; Veluvolu, Umadevi; Davis, Ian J.; Hepperla, Austin J.; Brohl, Andrew S.; Kasaian, Katayoon; Mungall, Karen; Sadeghi, Sara; Barthel, Floris P.; Verhaak, Roel; Hu, Xin; Chibon, Frederic; Cherniack, Andrew D.; Shih, Juliann; Beroukhim, Rameen; Meyerson, Matthew; Cibulskis, Carrie; Gabriel, Stacey B.; Saksena, Gordon; Schumacher, Steven E.; Bailey, Matthew H.; Gao, Qingsong; Wong, Winghing; Wyczalkowski, Matthew; Bowlby, Reanne; Robertson, A. Gordon; Ally, Adrian; Balasundaram, Miruna; Brooks, Denise; Carlsen, Rebecca; Chuah, Eric; Dhalla, Noreen; Holt, Robert A.; Jones, Steven J. M.; Lee, Darlene; Li, Irene; Ma, Yussanne; Marra, Marco A.; Mayo, Michael; Moore, Richard A.; Mungall, Andrew J.; Parker, Joel S.; Schein, Jacqueline E.; Sipahimalani, Payal; Tam, Angela; Thiessen, Nina; Wong, Tina; Danilova, Ludmila; Cope, Leslie; Baylin, Stephen B.; Bootwalla, Moiz S.; Lai, Phillip H.; Laird, Peter W.; Maglinte, Dennis T.; Van Den Berg, David J.; Weisenberger, Daniel J.; Wrangle, John; Drill, Esther; Shen, Ronglai; Iype, Lisa; Reynolds, Sheila M.; Shmulevich, Ilya; Yau, Christina; Armenia, Joshua; Liu, Eric Minwei; Benz, Christopher; Pastore, Alessandro; Sanchez-Vega, Francisco; Schultz, Nikolaus; Akbani, Rehan; Hegde, Apurva M.; Liu, Wenbin; Lu, Yiling; Mills, Gordon B.; Weinstein, John N.; Roszik, Jason; Anur, Pavana; Spellman, Paul; Abeshouse, Adam; Chen, Hsiao-Wei; Gao, Jianjiong; Heins, Zachary; Kundra, Ritika; Larsson, Erik; Ochoa, Angelica; Sanchez-Vega, Francisco; Sander, Chris; Schultz, Nikolaus; Socci, Nicholas; Zhang, Hongxin; Noble, Michael S.; Heiman, David I.; Kim, Jaegil; Chin, Lynda; Getz, Gad; Cho, Juok; Defreitas, Timothy; Frazer, Scott; Gehlenborg, Nils; Lawrence, Michael S.; Lin, Pei; Meier, Sam; Voet, Doug; Zhang, Hailei; Byers, Lauren; Diao, Lixia; Gay, Carl M.; Wang, Jing; Newton, Yulia; Cooper, Lee A. D.; Gutman, David A.; Lazar, Alexander J.; Lee, Sanghoon; Nalisnik, Michael; Bowen, Jay; Gastier-Foster, Julie M.; Gerken, Mark; Helsel, Carmen; Hobensack, Shital; Leraas, Kristen M.; Lichtenberg, Tara M.; Ramirez, Nilsa C.; Wise, Lisa; Zmuda, Erik; Anderson, Matthew L.; Castro, Patricia; Ittmann, Michael; Gordienko, Elena; Paklina, Oxana; Setdikova, Galiya; Raut, Chandrajit P.; Karlan, Beth Y.; Lester, Jenny; Belyaev, Dmitry; Fulidou, Victoria; Potapova, Olga; Voronina, Olga; Demetri, George D.; Ramalingam, Suresh S.; Behera, Madhusmita; Delman, Keith; Owonikoko, Taofeek K.; Sica, Gabriel L.; Boyd, Jeff; Magliocco, Anthony; Salner, Andrew; Bennett, Joesph; Iacocca, Mary; Swanson, Patricia; Dottino, Peter; Kalir, Tamara; Pereira, Elena; Akeredolu, Teniola; Crain, Daniel; Curley, Erin; Gardner, Johanna; Mallery, David; Morris, Scott; Paulauskis, Joseph; Penny, Robert; Shelton, Candace; Shelton, Troy; Thompson, Eric; Hoon, Dave B.; Parfitt, Jeremy; Birrer, Michael; Karseladze, Apollon; Mariamidze, Armaz; Dao, Fanny; Levine, Douglas A.; Olvera, Narciso; Maki, Robert G.; Bartlett, John; Eschbacher, Jennifer; Dubina, Michael; Mozgovoy, Evgeny; Fedosenko, Konstantin; Manikhas, Georgy; Sekhon, Harman; Ramirez, Nilsa; Lazar, Alexander J.; Ingram, Davis R.; Torres, Keila E.; DiSaia, Phil; Godwin, Andrew K.; Godwin, Eryn M.; Kuo, Hanluen; Madan, Rashna; Reilly, Colleen; Adebamowo, Clement; Adebamowo, Sally N.; Bocklage, Therese; Higgins, Kelly; Martinez, Cathleen; Auman, J. Todd; Boice, Lori; Grilley-Olson, Juneko E.; Huang, Mei; Perou, Amy H.; Thorne, Leigh B.; Rathmell, W. Kimryn; Gutmann, David H.; Singer, Samuel; Chudamani, Sudha; Liu, Jia; Lolla, Laxmi; Naresh, Rashi; Pihl, Todd; Sun, Qiang; Wan, Yunhu; Wu, Ye; Felau, Ina; Zenklusen, Jean C.; Demchok, John A.; Ferguson, Martin L.; Hutter, Carolyn M.; Sofia, Heidi J.; Tarnuzzer, Roy; Wang, Zhining; Yang, Liming; Zhang, Jiashan (Julia); Demicco, Elizabeth G.; Doyle, Leona A.; Hornick, Jason L.; Lazar, Alexander J.; Rubin, Brian P.; de Rijn, Matt van; Demetri, George D.; Baker, Laurence; Grilley-Olson, Juneko E.; Iype, Lisa; Lazar, Alexander J.; Lichtenberg, Tara M.; Raut, Chandrajit P.; Riedel, Richard F.; Demicco, Elizabeth G.; Ding, Li; Ladanyi, Marc; Lazar, Alexander J.; Novak, Janet E.; Sanchez-Vega, Francisco; Singer, Samuel; Van Tine, Brian A.; Byers, Lauren; Cope, Leslie; Cherniack, Andrew D.; Cooper, Lee A. D.; Davis, Ian J.; Davis, Lara E.; Demetri, George D.; Doyle, Leona A.; Drill, Esther; Godwin, Andrew K.; Grilley-Olsen, Juneko E.; Gutmann, David H.; Hayes, D. Neil; Hepperla, Austin J.; Hoadley, Katherine A.; Hoon, Dave B.; Hornick, Jason L.; Iype, Lisa; Kim, Jaegil; Maki, Robert G.; Pollock, Raphael E.; Raut, Chandrajit P.; Riedel, Richard F.; Robertson, A. Gordon; Rubin, Brian P.; Shih, Juliann; Weinstein, John N.; Wong, Winghing; Akbani, Rehan; Anderson, Matthew L.; Anur, Pavana; Bailey, Matthew H.; Benz, Christopher; Bowen, Jay; Bowlby, Reanne; Brohl, Andrew S.; Cherniack, Andrew D.; Cooper, Lee A. D.; Cope, Leslie; Danilova, Ludmila; Davis, Lara E.; Demetri, George D.; Gay, Carl M.; Godwin, Andrew K.; Grilley-Olson, Juneko E.; Gutman, David A.; Hegde, Apurva M.; Jones, Kevin B.; Kasaian, Katayoon; Ladanyi, Marc; Lazar, Alexander J.; Lee, Sanghoon; Leraas, Kristen M.; Lichtenberg, Tara M.; Martignetti, John A.; McLellan, Michael D.; Miller, Christopher A.; Mungall, Karen; Nalisnik, Michael; Noble, Michael S.; Raut, Chandrajit P.; Riedel, Richard F.; Robertson, A. Gordon; Roszik, Jason; Sadeghi, Sara; Sanchez-Vega, Francisco; Shen, Ronglai; Shih, Juliann; Tong, Pan; Torres, Keila E.; Yau, Christina; Zenklusen, Jean C.
  3. Cell. 2017, Nov 02; 171(4): 950-965.
  1. 4.   Association of polymorphisms in the LEDGF/p75 gene (PSIP1) with susceptibility to HIV-1 infection and disease progression
  2. Madlala, P.; Gijsbers, R.; Christ, F.; Hombrouck, A.; Werner, L.; Mlisana, K.; An, P.; Karim, S. S. A.; Winkler, C. A.; Debyser, Z.; Ndung'u, T.
  3. Aids. 2011, Sep; 25(14): 1711-1719.
  1. 5.   Kaposi Sarcoma (KS)-Associated Herpesvirus MicroRNA Sequence Analysis and KS Risk in a European AIDS-KS Case Control Study
  2. Marshall, V.; Martro, E.; Labo, N.; Ray, A.; Wang, D. A.; Mbisa, G.; Bagni, R. K.; Volfovsky, N.; Casabona, J.; Whitby, D.; Grp, E.-S. S.
  3. Journal of Infectious Diseases. 2010, Oct 1; 202(7): 1126-1135.
  1. 6.   Pharmacogenetics of Membrane Transporters: An Update on Current Approaches
  2. Sissung, T. M.; Baum, C. E.; Kirkl, C. T.; Gao, R.; Gardner, E. R.; Figg, W. D.
  3. Molecular Biotechnology. 2010, Feb; 44(2): 152-167.
  1. 7.   Variants in Interferon-Alpha Pathway Genes and Response to Pegylated Interferon-Alpha2a Plus Ribavirin for Treatment of Chronic Hepatitis C Virus Infection in the Hepatitis C Antiviral Long-Term Treatment Against Cirrhosis Trial
  2. Welzel, T. M.; Morgan, T. R.; Bonkovsky, H. L.; Naishadham, D.; Pfeiffer, R. M.; Wright, E. C.; Hutchinson, A. A.; Crenshaw, A. T.; Bashirova, A.; Carrington, M.; Dotrang, M.; Sterling, R. K.; Lindsay, K. L.; Fontana, R. J.; Lee, W. M.
  3. Hepatology. 2009 49(6): 1847-1858.
  1. 8.   Evaluation of IL10, IL19 and IL20 gene polymorphisms and chronic hepatitis B infection outcome
  2. Truelove, A. L.; Oleksyk, T. K.; Shrestha, S.; Thio, C. L.; Goedert, J. J.; Donfield, S. M.; Kirk, G. D.; Thomas, D. L.; O'Brien, S. J.; Smith, M. W.
  3. International Journal of Immunogenetics. 2008 35(3): 255-264.
  1. 9.   Successful genome-wide scan in paired blood and buccal samples
  2. Feigelson, H. S.; Rodriguez, C.; Welch, R.; Hutchinson, A.; Shao, W.; Jacobs, K.; Diver, W. R.; Calle, E. F.; Thun, M. J.; Hunter, D. J.; Thomas, G.; Chanock, S. J.
  3. Cancer Epidemiology Biomarkers & Prevention. 2007, May; 16(5): 1023-1025.
  1. 10.   Effects of human TRIM5 alpha polymorphisms on antiretroviral function and susceptibility to human immunodeficiency virus infection
  2. Javanbakht, H.; An, P.; Gold, B.; Petersen, D. C.; O'Huigin, C.; Nelson, G. W.; O'Brien, S. J.; Kirk, G. D.; Detels, R.; Buchbinder, S.; Donfield, S.; Shulenin, S.; Song, B.; Perron, M. J.; Stremlau, M.; Sodroski, J.; Dean, M.; Winkler, C.
  3. Virology. 2006, Oct; 354(1): 15-27.
  1. 11.   Association of enzyme and transporter genotypes with the pharmacokinetics of imatinib
  2. Gardner, E. R.; Burger, H.; van Schaik, R. H.; van Oosterom, A. T.; de Bruijn, E. A.; Guetens, G.; Prenen, H.; de Jong, F. A.; Baker, S. D.; Bates, S. E.; Figg, W. D.; Verweij, J.; Sparreboom, A.; Nooter, K.
  3. Clinical Pharmacology & Therapeutics. 2006, Aug; 80(2): 192-201.
  1. 12.   Exploring SNP-SNP interactions and colon cancer risk using polymorphism interaction analysis
  2. Goodman, J. E.; Mechanic, L. E.; Luke, B. T.; Ambs, S.; Chanock, S.; Harris, C. C.
  3. International Journal of Cancer. 2006, Apr; 118(7): 1790-1797.
  1. 13.   Genetic variation in TNF and IL10 and risk of non-Hodgkin lymphoma: a report from the InterLymph Consortium
  2. Rothman, N.; Skibola, C. F.; Wang, S. S.; Morgan, G.; Lon, Q.; Smith, M. T.; Spinelli, J. J.; Willett, E.; De Sanjose, S.; Cocco, P.; Berndt, S. I.; Brennan, P.; Brooks-Wilson, A.; Wacholder, S.; Becker, N.; Hartge, P.; Zheng, T. Z.; Roman, E.; Holly, E. A.; Boffetta, P.; Armstrong, B.; Cozen, W.; Linet, M.; Bosch, F. X.; Ennas, M. G.; Holford, T. R.; Gallagher, R. P.; Rollinson, S.; Bracci, P. M.; Cerhan, J. R.; Whitby, D.; Moore, P. S.; Leaderer, B.; Lai, A.; Spink, C.; Davis, S.; Bosch, R.; Scarpa, A.; Zhang, Y. W.; Severson, R. K.; Yeager, M.; Chanock, S.; Nieters, A.
  3. Lancet Oncology. 2006, JAN; 7(1): 27-38.
  1. 14.   Risk for HIV-1 infection associated with a common CXCL12 (SDF1) polymorphism and CXCR4 variation in an African population
  2. Petersen, D. C.; Glashoff, R. H.; Shrestha, S.; Bergeron, J.; Laten, A.; Gold, B.; van Rensburg, E. J.; Dean, M.; Hayes, V. M.
  3. Jaids-Journal of Acquired Immune Deficiency Syndromes. 2005, DEC 15; 40(5): 521-526.
  1. 15.   Haplotype analysis of the SDF-1 (CXCL12) gene in a longitudinal HIV-1/AIDS cohort study
  2. Modi, W. S.; Scott, K.; Goedert, J. J.; Vlahov, D.; Buchbinder, S.; Detels, R.; Donfield, S.; O'Brien, S. J.; Winkler, C.
  3. Genes and Immunity. 2005, DEC; 6(8): 691-698.
  1. 16.   High level of functional polymorphism indicates a unique role of natural selection at human immune system loci
  2. Hughes, A. L.; Packer, B.; Welch, R.; Chanock, S. J.; Yeager, M.
  3. Immunogenetics. 2005, DEC; 57(11): 821-827.
  1. 17.   Genetic variation, nucleotide diversity, and linkage disequilibrium in seven telomere stability genes suggest that these genes may be under constraint
  2. Savage, S. A.; Stewart, B. J.; Eckert, A.; Kiley, M.; Liao, J. S.; Chanock, S. J.
  3. Human Mutation. 2005, OCT; 26(4): 343-350.
  1. 18.   Effects of DNA mass on multiple displacement whole genome amplification and genotyping performance
  2. Bergen, A. W.; Qi, Y.; Haque, K. A.; Welch, R. A.; Chanock, S. J.
  3. BMC Biotechnology. 2005, SEP 16; 5
  1. 19.   Single nucleotide polymorphisms and haplotypes in the IL10 region associated with HCV clearance
  2. Oleksyk, T. K.; Thio, C. L.; Truelove, A. L.; Goedert, J. J.; Donfield, S. M.; Kirk, G. D.; Thomas, D. L.; O'Brien, S. J.; Smith, M. W.
  3. Genes and Immunity. 2005, JUN; 6(4): 347-357.
  1. 20.   Variants in the Wilms' tumor gene are associated with focal segmental glomerulosclerosis in the African American population
  2. Orloff, M. S.; Iyengar, S. K.; Winkler, C. A.; Goddard, K. A. B.; Dart, R. A.; Ahuja, T. S.; Mokrzycki, M.; Briggs, W. A.; Korbet, S. M.; Kimmel, P. L.; Simon, E. E.; Trachtman, H.; Vlahov, D.; Michel, D. M.; Berns, J. S.; Smith, M. C.; Schelling, J. R.; Sedor, J. R.; Kopp, J. B.
  3. Physiological Genomics. 2005, APR 14; 21(2): 212-221.
  1. 21.   The linkage disequilibrium maps of three human chromosomes across four populations reflect their demographic history and a common underlying recombination pattern
  2. De La Vega, F. M.; Isaac, H.; Collins, A.; Scafe, C. R.; Halldorsson, B. V.; Su, X. P.; Lippert, R. A.; Wang, Y.; Laig-Webster, M.; Koehler, R. T.; Ziegle, J. S.; Wogan, L. T.; Stevens, J. F.; Leinen, K. M.; Olson, S. J.; Guegler, K. J.; You, X. Q.; Xu, L. H.; Hemken, H. G.; Kalush, F.; Itakura, M.; Zheng, Y.; de The, G.; O'Brien, S. J.; Clark, A. G.; Istrail, S.; Hunkapiller, M. W.; Spier, E. G.; Gilbert, D. A.
  3. Genome Research. 2005, APR; 15(4): 454-462.
  1. 22.   Effects of electron-beam irradiation on whole genome amplification
  2. Bergen, A. W.; Qi, Y.; Haque, K. A.; Welch, R. A.; Garcia-Closas, M.; Chanock, S. J.; Vaught, J.; Castle, P. E.
  3. Cancer Epidemiology Biomarkers & Prevention. 2005, APR; 14(4): 1016-1019.
  1. 23.   Estrogen receptor genotypes and haplotypes associated with breast cancer risk
  2. Gold, B.; Kalush, F.; Bergeron, J.; Scott, K.; Mitra, N.; Wilson, K.; Ellis, N.; Huang, H.; Chen, M.; Lippert, R.; Halldorsson, B. V.; Woodworth, B.; White, T.; Clark, A. G.; Parl, F. F.; Broder, S.; Dean, M.; Offit, K.
  3. Cancer Research. 2004, DEC 15; 64(24): 8891-8900.
  1. 24.   Association of DC-SIGN promoter polymorphism with increased risk for parenteral, but not mucosal, acquisition of human immunodeficiency virus type 1 infection
  2. Martin, M. P.; Lederman, M. M.; Hutcheson, H. B.; Goedert, J. J.; Nelson, G. W.; van Kooyk, Y.; Detels, R.; Buchbinder, S.; Hoots, K.; Vlahov, D.; O'Brien, S. J.; Carrington, M.
  3. Journal of Virology. 2004, DEC; 78(24): 14053-14056.
  1. 25.   Polymorphisms in multidrug resistance 1 (MDR1) gene are associated with refractory Crohn disease and ulcerative colitis
  2. Potocnik, U.; Ferkolj, I.; Glavac, D.; Dean, M.
  3. Genes and Immunity. 2004, NOV; 5(7): 530-539.
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