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  1. 1.   Amyloid Oligomers: A Joint Experimental/Computational Perspective on Alzheimer's Disease, Parkinson's Disease, Type II Diabetes, and Amyotrophic Lateral Sclerosis
  2. Nguyen, Phuong H.; Ramamoorthy, Ayyalusamy; Sahoo, Bikash R.; Zheng, Jie; Faller, Peter; Straub, John E.; Dominguez, Laura; Shea, Joan-Emma; Dokholyan, Nikolay; De Simone, Alfonso; Ma, Buyong; Nussinov,Ruth; Najafi, Saeed; Ngo, Son Tung; Loquet, Antoine; Chiricotto, Mara; Ganguly, Pritam; McCarty, James; Li, Mai Suan; Hall, Carol; Wang, Yiming; Miller, Yifat; Melchionna, Simone; Habenstein, Birgit; Timr, Stepan; Chen, Jiaxing; Hnath, Brianna; Strodel, Birgit; Kayed, Rakez; Lesne, Sylvain; Wei, Guanghong; Sterpone, Fabio; Doig, Andrew J.; Derreumaux, Philippe
  3. Chemical Reviews. 2021, Feb 24; 121(4): 2545-2647.
  1. 2.   Application of Post Solid-Phase Oxime Ligation to Fine-Tune Peptide-Protein Interactions
  2. Zhao,Xue Zhi; Liu, Fa; Burke,Terrence
  3. Molecules (Basel, Switzerland). 2020, JUN; 25(12):
  1. 3.   LC-MS/MS assay coupled with carboxylic acid magnetic bead affinity capture to quantitatively measure cationic host defense peptides (HDPs) in complex matrices with application to preclinical pharmacokinetic studies
  2. O'Neill,Maura; Chan,King; Jaynes, Jesse M; Knotts, Zachary; Xu,Xia; Abisoye-Ogunniyan, Abisola; Guerin,Theresa; Schlomer,Jerome; Li, Dandan; Cary, Jeffrey W; Rajasekaran, Kanniah; Yates, Clayton; Kozlov,Serguei; Andresson,Thorkell; Rudloff, Udo
  3. Journal of pharmaceutical and biomedical analysis. 2020, Mar 20; 181: 113093.
  1. 4.   NCI Program for Natural Product Discovery: A Publicly-Accessible Library of Natural Product Fractions for High-Throughput Screening
  2. Thornburg,Chris; Britt,John; Evans,Jason; Akee,Rhone; Whitt, James A.; Trinh,Spencer; Harris,Matthew; Thompson,Jerell; Ewing,Teresa; Shipley,Suzanne; Grothaus,Paul; Newman,Dave; Schneider,Joel; Grkovic,Tanja; O'Keefe,Barry
  3. ACS CHEMICAL BIOLOGY. 2018, Sep 21; 13(9): 2484-2497.
  1. 5.   Oxime-based linker libraries as a general approach for the rapid generation and screening of multidentate inhibitors
  2. Bahta, M.; Liu, F.; Kim, S. E.; Stephen, A. G.; Fisher, R. J.; Burke, T. R.
  3. Nature Protocols. 2012, Apr; 7(4): 686-702.
  1. 6.   Inhibition of multi-drug resistant HIV-1 reverse transcriptase by nucleoside beta-triphosphates
  2. Dash, C.; Ahmadibeni, Y.; Hanley, M. J.; Pandhare, J.; Gotte, M.; Le Grice, S. F. J.; Parang, K.
  3. Bioorganic & Medicinal Chemistry Letters. 2011, Jun; 21(12): 3519-3522.
  1. 7.   beta-Barrel Topology of Alzheimer's beta-Amyloid Ion Channels
  2. Jang, H.; Arce, F. T.; Ramachandran, S.; Capone, R.; Lal, R.; Nussinov, R.
  3. Journal of Molecular Biology. 2010, Dec; 404(5): 917-934.
  1. 8.   Polymorphic C-terminal beta-Sheet Interactions Determine the Formation of Fibril or Amyloid beta-derived Diffusible Ligand-like Globulomer for the Alzheimer A beta 42 Dodecamer
  2. Ma, B. Y.; Nussinov, R.
  3. Journal of Biological Chemistry. 2010, Nov; 285(47): 37102-37110.
  1. 9.   Polymorphism in Alzheimer A beta Amyloid Organization Reflects Conformational Selection in a Rugged Energy Landscape
  2. Miller, Y.; Ma, B.; Nussinov, R.
  3. Chemical Reviews. 2010, Aug; 110(8): 4820-4838.
  1. 10.   Antimicrobial Protegrin-1 Forms Ion Channels: Molecular Dynamic Simulation, Atomic Force Microscopy, and Electrical Conductance Studies
  2. Capone, R.; Mustata, M.; Jang, H.; Arce, F. T.; Nussinov, R.; Lal, R.
  3. Biophysical Journal. 2010, Jun; 98(11): 2644-2652.
  1. 11.   Resonance Assignment and Three-Dimensional Structure Determination of a Human alpha-Defensin, HNP-1, by Solid-State NMR
  2. Zhang, Y.; Doherty, T.; Li, J.; Lu, W. Y.; Barinka, C.; Lubkowski, J.; Hong, M.
  3. Journal of Molecular Biology. 2010, Mar; 397(2): 408-422.
  1. 12.   Application of ring-closing metathesis macrocyclization to the development of Tsg101-binding antagonists
  2. Liu, F.; Stephen, A. G.; Waheed, A. A.; Freed, E. O.; Fisher, R. J.; Burke, T. R.
  3. Bioorganic & Medicinal Chemistry Letters. 2010, Jan; 20(1): 318-321.
  1. 13.   Atomic-Scale Simulations Confirm that Soluble beta-Sheet-Rich Peptide Self-Assemblies Provide Amyloid Mimics Presenting Similar Conformational Properties
  2. Yu, X.; Wang, J. D.; Yang, J. C.; Wang, Q. M.; Cheng, S. Z. D.; Nussinov, R.; Zheng, J.
  3. Biophysical Journal. 2010, Jan; 98(1): 27-36.
  1. 14.   Polymorphism of Alzheimer's A beta(17-42) (p3) Oligomers: The Importance of the Turn Location and Its Conformation
  2. Miller, Y.; Ma, B. Y.; Nussinov, R.
  3. Biophysical Journal. 2009 97(4): 1168-1177.
  1. 15.   K3 Fragment of Amyloidogenic beta(2)-Microglobulin Forms Ion Channels: Implication for Dialysis Related Amyloidosis
  2. Mustata, M.; Capone, R.; Jang, H.; Arce, F. T.; Ramachandran, S.; Lal, R.; Nussinov, R.
  3. Journal of the American Chemical Society. 2009 131(41): 14938-14945.
  1. 16.   Structural Analysis of a beta-Helical Protein Motif Stabilized by Targeted Replacements with Conformationally Constrained Amino Acids
  2. Ballano, G.; Zanuy, D.; Jimenez, A. I.; Cativiela, C.; Nussinov, R.; Aleman, C.
  3. Journal of Physical Chemistry B. 2008 112(41): 13101-13115.
  1. 17.   New structures help the modeling of toxic amyloid beta ion channels
  2. Jang, H. B.; Zheng, J.; Lal, R.; Nussinov, R.
  3. Trends in Biochemical Sciences. 2008 33(2): 91-100.
  1. 18.   Models of Toxic beta-Sheet Channels of Protegrin-1 Suggest a Common Subunit Organization Motif Shared with Toxic Alzheimer beta-Amyloid Ion Channels
  2. Jang, H.; Ma, B.; Lal, R.; Nussinov, R.
  3. Biophysical Journal. 2008 95(10): 4631-4642.
  1. 19.   Application of a trifunctional reactive linker for the construction of antibody-drug hybrid conjugates
  2. Thomas, J. D.; Hofer, T.; Rader, C.; Burke, T. R.
  3. Bioorganic & Medicinal Chemistry Letters. 2008 18(21): 5785-5788.
  1. 20.   Annular structures as intermediates in fibril formation of Alzheimer A beta(17-42)
  2. Zheng, J.; Jang, H.; Ma, B.; Nussinov, R.
  3. Journal of Physical Chemistry B. 2008 112(22): 6856-6865.
  1. 21.   Modeling the Alzheimer A beta(17-42) fibril architecture: Tight intermolecular sheet-sheet association and intramolecular hydrated cavities
  2. Zheng, J.; Jang, H.; Ma, B.; Tsai, C. J.; Nussinov, R.
  3. Biophysical Journal. 2007, Nov; 93(9): 3046-3057.
  1. 22.   Preparation of orthogonally-protected 3-methoxy-4-phosphonomethyl-L-phenylalanine, a new reagent for the synthesis of phosphotyrosyl mimetic-containing peptides
  2. Choi, W. J.; Xang, S. U.; Burke, T. R.
  3. Letters in Organic Chemistry. 2007, Sep; 4(6): 433-439.
  1. 23.   Models of beta-amyloid ion channels in the membrane suggest that channel formation in the bilayer is a dynamic process
  2. Jang, H.; Zheng, J.; Nussinov, R.
  3. Biophysical Journal. 2007, Sep; 93(6): 1938-1949.
  1. 24.   Immunological properties of engineered nanomaterials
  2. Dobrovolskaia, M. A.; McNeil, S. E.
  3. Nature Nanotechnology. 2007, Aug; 2(8): 469-478.
  1. 25.   Principles of nanostructure design with protein building blocks
  2. Tsai, C. J.; Zheng, J.; Zanuy, D.; Haspel, N.; Wolfson, H.; Aleman, C.; Nussinov, R.
  3. Proteins-Structure Function and Bioinformatics. 2007, Jul; 68(1): 1-12.
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