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  1. 1.   Noncanonical circRNA biogenesis driven by alpha and gamma herpesviruses
  2. Dremel, Sarah E; Koparde,Vishal; Arbuckle, Jesse H; Hogan, Chad H; Kristie, Thomas M; Krug, Laurie T; Conrad, Nicholas K; Ziegelbauer, Joseph M
  3. The EMBO Journal. 2025, Mar 03;
  1. 2.   The differential interactomes of the KRAS splice variants identify BIRC6 as a ubiquitin ligase for KRAS4A
  2. Kochen Rossi, Juan; Nuevo-Tapioles, Cristina; O'Keefe, Rachel A; Hunkeler, Moritz; Schmoker, Anna M; Fissore-O'Leary, Mercedes; Su, Wenjuan; Ahearn, Ian M; Branco, Cristina; Cheong, Hakyung; Esposito,Dom; Clotea, Ioana; Ueberheide, Beatrix; Fischer, Eric S; Philips, Mark R
  3. Cell Reports. 2024, Dec 19; 44(1): 115087.
  1. 3.   Interleukin-2-mediated NF-kB-dependent mRNA splicing modulates interferon gamma protein production
  2. Van Gelder, Rachel D; Gokhale, Nandan S; Genoyer, Emmanuelle; Omelia, Dylan S; Anderson,Steve; Young,Howard; Savan, Ram
  3. EMBO Reports. 2024, Nov 22;
  1. 4.   Genome-scale exon perturbation screens uncover exons critical for cell fitness
  2. Xiao,Meisheng; Damodaran,Arun Prasath; Kumari,Bandana; Dickson, Ethan; Xing, Kun; On, Tyler A; Parab, Nikhil; King, Helen E; Perez, Alexendar R; Guiblet,Wilfried; Duncan,Gerard; Che,Anney; Chari,Raj; Andresson,Thorkell; Vidigal, Joana A; Weatheritt, Robert J; Aregger,Michael; Gonatopoulos Pournatzis,Thomas
  3. Molecular Cell. 2024, Jul 11; 84(13): 2553-2572.
  1. 5.   Aberrant spliceosome activity via elevated intron retention and upregulation and phosphorylation of SF3B1 in chronic lymphocytic leukemia
  2. Kashyap, Manoj Kumar; Karathia,Hiren; Kumar, Deepak; Vera Alvarez, Roberto; Forero-Forero, Jose Vicente; Moreno, Eider; Lujan, Juliana Velez; Amaya-Chanaga, Carlos Ivan; Vidal, Newton Medeiros; Yu, Zhe; Ghia, Emanuela M; Lengerke-Diaz, Paula A; Achinko, Daniel; Choi, Michael Y; Rassenti, Laura Z; Mariño-Ramírez, Leonardo; Mount, Stephen M; Hannenhalli, Sridhar; Kipps, Thomas J; Castro, Januario E
  3. Molecular Therapy. Nucleic acids. 2024, Jun 11; 35(2): 102202.
  1. 6.   Purification of Circular RNAs Using Poly(A) Tailing Followed by RNase R Digestion
  2. Xiao, Mei-Sheng; Wilusz, Jeremy E
  3. Methods in Molecular Biology (Clifton, N.J.). 2024 2765: 3-19.
  1. 7.   Integration and viral oncogene expression of human papillomavirus type 16 in oropharyngeal squamous cell carcinoma and gastric cancer
  2. Xu, Qiang; Dong, Haoru; Wang, Zhiyu; Zhang, Pei; Albers, Andreas E; Kaufmann, Andreas M; Zheng,Zhi-Ming; Qian, Xu
  3. Journal of Medical Virology. 2023, May; 95(5): e28761.
  1. 8.   Matrin3 regulates mitotic spindle dynamics by controlling alternative splicing of CDC14B
  2. Muys, Bruna R; Shrestha, Roshan L; Anastasakis, Dimitrios G; Pongor, Lorinc; Li, Xiao Ling; Grammatikakis, Ioannis; Polash, Ahsan; Chari,Raj; Gorospe, Myriam; Harris, Curtis C; Aladjem, Mirit I; Basrai, Munira A; Hafner, Markus; Lal, Ashish
  3. Cell Reports. 2023, Mar 15; 42(3): 112260.
  1. 9.   Promiscuous splicing-derived hairpins are dominant substrates of tailing-mediated defense of miRNA biogenesis in mammals
  2. Lee, Seungjae; Jee, David; Srivastava, Sid; Yang,Acong; Ramidi, Abhinav; Shang, Renfu; Bortolamiol-Becet, Diane; Pfeffer, Sébastien; Gu,Shuo; Wen, Jiayu; Lai, Eric C
  3. Cell Reports. 2023, Feb 16; 42(2): 112111.
  1. 10.   CD47-Dependent Regulation of Immune Checkpoint Gene Expression and MYCN mRNA Splicing in Murine CD8 and Jurkat T Cells
  2. Kaur, Sukhbir; Awad, Duha; Finney, Richard P; Meyer, Thomas J; Singh, Satya P; Cam, Margaret C; Karim,Baktiar; Warner,Andrew; Roberts, David D
  3. International Journal of Molecular Sciences. 2023, Jan 30; 24(3):
  1. 11.   Context-Dependent Function of Long Noncoding RNA PURPL in Transcriptome Regulation during p53 Activation
  2. Hartford, Corrine Corrina R; Shrestha, Roshan L; Pongor, Lorinc; Zhao,Yongmei; Chen, Xiongfong; Fromont,Caroline; Chaudhary, Ritu; Li, Xiao Ling; Pasterczyk, Katherine R; Kumar, Ravi; Muys, Bruna R; Tsitsipatis, Dimitrios; Chari,Raj; Gorospe, Myriam; Aladjem, Mirit I; Khan, Javed; Basrai, Munira A; Grammatikakis, Ioannis; Lal, Ashish
  3. Molecular and Cellular Biology. 2022, Nov 07; 42(12): e0028922.
  1. 12.   Systematic exploration of dynamic splicing networks reveals conserved multistage regulators of neurogenesis
  2. Han, Hong; Best, Andrew J; Braunschweig, Ulrich; Mikolajewicz, Nicholas; Li, Jack Daiyang; Roth, Jonathan; Chowdhury, Fuad; Mantica, Federica; Nabeel-Shah, Syed; Parada, Guillermo; Brown, Kevin R; O'Hanlon, Dave; Wei, Jiarun; Yao, Yuxi; Zid, Abdelrahman Abou; Comsa, Lim Caden; Jen, Mark; Wang, Jenny; Datti, Alessandro; Gonatopoulos Pournatzis,Thomas; Weatheritt, Robert J; Greenblatt, Jack F; Wrana, Jeffrey L; Irimia, Manuel; Gingras, Anne-Claude; Moffat, Jason; Blencowe, Benjamin J
  3. Molecular Cell. 2022, Jul 31; 82(16): 2982-2999.
  1. 13.   Reply to Wang et al., "Assessment of the Abundance and Potential Function of Human Papillomavirus Type 16 Circular E7 RNA"
  2. Yu,Lulu; Lobanov, Alexei; Zheng,Zhi-Ming
  3. mBio. 2022, May 17; e0075822.
  1. 14.   Human Papillomavirus Type 16 Circular RNA Is Barely Detectable for the Claimed Biological Activity
  2. Yu, Lulu; Zheng, Zhi-Ming
  3. mBio. 2022, Jan 18; 13(1): e0359421.
  1. 15.   Identification of a dysfunctional exon-skipping splice variant in GLUT9/SLC2A9 causal for renal hypouricemia type 2
  2. Toyoda, Yu; Cho, Sung Kweon; Tasic, Velibor; Pavelcová, Katerina; Bohatá, Jana; Suzuki, Hiroshi; David, Victor A; Yoon,Jaeho; Pallaiova, Anna; Šaligová, Jana; Nousome,Darryl; Cachau, Raul; Winkler,Cheryl; Takada, Tappei; Stiburková, Blanka
  3. Frontiers in Genetics. 2022 13: 1048330.
  1. 16.   The Convergence of the Hedgehog/Intein Fold in Different Protein Splicing Mechanisms
  2. Beyer, Hannes M; Virtanen, Salla I; Aranko, A Sesilja; Mikula, Kornelia M; Lountos,George; Wlodawer,Alexander; Ollila, O H Samuli; Iwaï, Hideo
  3. International journal of molecular sciences. 2020, Nov 07; 21(21): 8367.
  1. 17.   Epigenetic Regulation of DNA Repair Pathway Choice by MacroH2A1 Splice Variants Ensures Genome Stability
  2. Sebastian, Robin; Hosogane, Eri K; Sun, Eric G; Tran, Andy D; Reinhold, William C; Burkett,Sandra; Sturgill, David M; Gudla, Prabhakar R; Pommier, Yves; Aladjem, Mirit I; Oberdoerffer, Philipp
  3. Molecular cell. 2020, SEP 3; 79(5): 836-+.
  1. 18.   Novel, abundant Drosha isoforms are deficient in miRNA processing in cancer cells
  2. Dai,Lisheng; Hallmark, Lillian; Bofill De Ros,Xavier; Crouch, Howard; Chen, Sean; Shi, Tony; Yang,Acong; Lian, Chuanjiang; Zhao,Yongmei; Tran,Bao; Gu,Shuo
  3. RNA biology. 2020, AUG 31;
  1. 19.   Tuning of NK-Specific HLA-C Expression by Alternative mRNA Splicing
  2. Goodson-Gregg,Joseph; Rothbard,Brian; Zhang, Amy; Wright,Paul; Li,Hongchuan; Walker-Sperling,Victoria; Carrington,Mary; Anderson,Steve
  3. Frontiers in immunology. 2020, JAN 10; 10: 3034.
  1. 20.   HNRNPH1-dependent splicing of a fusion oncogene reveals a targetable RNA G-quadruplex interaction
  2. Neckles, Carla; Boer, Robert E; Aboreden, Nicholas; Cross, Allison M; Walker, Robert L; Kim, Bong-Hyun; Kim, Suntae; Schneekloth,Jay; Caplen, Natasha J
  3. RNA (New York, N.Y.). 2019, Dec; 25(12): 1731-1750.
  1. 21.   The crystal structure of the naturally split gp41-1 intein guides the engineering of orthogonal split inteins from cis-splicing inteins
  2. Michael Beyer, Hannes; Malgorzata Mikula, Kornelia; Li,Mi; Wlodawer,Alexander; Iwaï, Hideo
  3. The FEBS journal. 2019, Nov 19;
  1. 22.   HPV18 Utilizes Two Alternative Branch Sites for E6*I Splicing to Produce E7 Protein
  2. Brant, Ayslan Castro; Majerciak,Vladimir; Martins Moreira, Miguel Angelo; Zheng,Zhi-Ming
  3. Virologica Sinica. 2019, Apr; 34(2): 211-221.
  1. 23.   Structural basis for the persistence of homing endonucleases in transcription factor IIB inteins
  2. Iwaï, Hideo; Mikula, Kornelia M; Oeemig, Jesper S; Zhou, Dongwen; Li, Mi; Wlodawer, Alexander
  3. Journal of Molecular Biology. 2017, Dec 8; 429(24): 3942-3956.
  1. 24.   Intragenic DNA methylation and BORIS-mediated cancer-specific splicing contribute to the Warburg effect
  2. Singh, Smriti; Narayanan, Sathiya Pandi; Biswas, Kajal; Gupta, Amit; Ahuja, Neha; Yadav, Sandhya; Panday, Rajendra Kumar; Samaiya, Atul; Sharan, Shyam; Shukla, Sanjeev
  3. Proceedings of the National Academy of Sciences of the United States of America. 2017, Oct 24; 114(43): 11440-11445.
  1. 25.   Direct Regulation of Alternative Splicing by SMAD3 through PCBP1 Is Essential to the Tumor-Promoting Role of TGF-beta
  2. Tripathi, V.; Sixt, K. M.; Gao, S.; Xu, X.; Huang, J.; Weigert, R.; Zhou, M.; Zhang, Y. E.
  3. Molecular Cell. 2016, 4-Oct; 64(3): 549-564.
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