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  1. 1.   Covalent Small Molecule Immunomodulators Targeting the Protease Active Site
  2. Kim,Hong-Rae; Tagirasa,Ravichandra; Yoo,Euna
  3. Journal of medicinal chemistry. 2021, May 13; 64(9): 5291-5322.
  1. 2.   dagLogo: An R/Bioconductor package for identifying and visualizing differential amino acid group usage in proteomics data
  2. Ou, Jianhong; Liu, Haibo; Nirala, Niraj K.; Stukalov, Alexey; Acharya,Usha; Green, Michael R.; Zhu, Lihua Julie
  3. PLOS ONE. 2020, NOV 6; 15(11):
  1. 3.   Generalized enzymatic mechanism of catalysis by tetrameric L-asparaginases from mesophilic bacteria
  2. Strzelczyk,Pawel; Zhang,Di; Dyba,Marzena; Wlodawer,Alexander; Lubkowski,Jacek
  3. SCIENTIFIC REPORTS. 2020, OCT 15; 10(1):
  1. 4.   Mechanism of Catalysis by L-Asparaginase
  2. Lubkowski,Jacek; Vanegas, Juan Manuel; Chan, Wai-Kin; Lorenzi, Philip L.; Weinstein, John N.; Sukharev, Sergei; Fushman, David; Rempe, Susan B.; Anishkin, Andriy; Wlodawer,Alexander
  3. BIOCHEMISTRY. 2020, MAY 26; 59(20): 1927-1945.
  1. 5.   Farnesyltransferase-Mediated Delivery of a Covalent Inhibitor Overcomes Alternative Prenylation to Mislocalize K-Ras
  2. Novotny, Chris J.; Hamilton, Gregory L.; McCormick, Frank; Shokat, Kevan M.
  3. ACS CHEMICAL BIOLOGY. 2017, Jul; 12(7): 1956-1962.
  1. 6.   Oxime-based linker libraries as a general approach for the rapid generation and screening of multidentate inhibitors
  2. Bahta, M.; Liu, F.; Kim, S. E.; Stephen, A. G.; Fisher, R. J.; Burke, T. R.
  3. Nature Protocols. 2012, Apr; 7(4): 686-702.
  1. 7.   Controlled biodegradation of Self-assembling beta-hairpin Peptide hydrogels by proteolysis with matrix metalloproteinase-13
  2. Giano, M. C.; Pochan, D. J.; Schneider, J. P.
  3. Biomaterials. 2011, Sep; 32(27): 6471-6477.
  1. 8.   Structure of human dual-specificity phosphatase 27 at 2.38 angstrom resolution
  2. Lountos, G. T.; Tropea, J. E.; Waugh, D. S.
  3. Acta Crystallographica Section D-Biological Crystallography. 2011, May; 67: 471-479.
  1. 9.   Inhibition of helicase activity by a small molecule impairs Werner syndrome helicase (WRN) function in the cellular response to DNA damage or replication stress
  2. Aggarwal, M.; Sommers, J. A.; Shoemaker, R. H.; Brosh, R. M.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2011, Jan; 108(4): 1525-1530.
  1. 10.   Allosteric Regulation of Glycogen Synthase Kinase 3 beta: A Theoretical Study
  2. Buch, I.; Fishelovitch, D.; London, N.; Raveh, B.; Wolfson, H. J.; Nussinov, R.
  3. Biochemistry. 2010, Dec; 49(51): 10890-10901.
  1. 11.   How Does the Reductase Help To Regulate the Catalytic Cycle of Cytochrome P450 3A4 Using the Conserved Water Channel?
  2. Fishelovitch, D.; Shaik, S.; Wolfson, H. J.; Nussinov, R.
  3. Journal of Physical Chemistry B. 2010, May; 114(17): 5964-5970.
  1. 12.   Pharmacogenetics of Membrane Transporters: An Update on Current Approaches
  2. Sissung, T. M.; Baum, C. E.; Kirkl, C. T.; Gao, R.; Gardner, E. R.; Figg, W. D.
  3. Molecular Biotechnology. 2010, Feb; 44(2): 152-167.
  1. 13.   The Early Years of Retroviral Protease Crystal Structures
  2. Miller, M.
  3. Biopolymers. 2010 94(4): 521-529.
  1. 14.   Structure of HIV-1 Reverse Transcriptase with the Inhibitor beta-Thujaplicinol Bound at the RNase H Active Site
  2. Himmel, D. M.; Maegley, K. A.; Pauly, T. A.; Bauman, J. D.; Das, K.; Dharia, C.; Clark, A. D.; Ryan, K.; Hickey, M. J.; Love, R. A.; Hughes, S. H.; Bergqvist, S.; Arnold, E.
  3. Structure. 2009 17(12): 1625-1635.
  1. 15.   Mechanism of sequence-specific pausing of bacterial RNA polymerase
  2. Kireeva, M. L.; Kashlev, M.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2009 106(22): 8900-8905.
  1. 16.   Atomic resolution structure of the cytoplasmic domain of Yersinia pestis YscU, a regulatory switch involved in type III secretion
  2. Lountos, G. T.; Austin, B. P.; Nallamsetty, S.; Waugh, D. S.
  3. Protein Science. 2009 18(2): 467-474.
  1. 17.   Interactions between Human Glutamate Carboxypeptidase II and Urea-Based Inhibitors: Structural Characterization
  2. Barinka, C.; Byun, Y.; Dusich, C. L.; Banerjee, S. R.; Chen, Y.; Castanares, M.; Kozikowski, A. P.; Mease, R. C.; Pomper, M. G.; Lubkowski, J.
  3. Journal of Medicinal Chemistry. 2008 51(24): 7737-7743.
  1. 18.   The mechanism of RNase III action: How Dicer dices
  2. Ji, X. H.
  3. Rna Interference. 2008 320: 99-116.
  1. 19.   Integration of Rous Sarcoma Virus DNA: a CA Dinucleotide Is Not Required for Integration of the U3 End of Viral DNA
  2. Oh, J.; Chang, K. W.; Hughes, S. H.
  3. Journal of Virology. 2008 82(22): 11480-11483.
  1. 20.   The QM/MM molecular dynamics and free energy simulations of the acylation reaction catalyzed by the serine-carboxyl peptidase kumamolisin-As
  2. Xu, Q.; Guo, H. B.; Wlodawer, A.; Nakayama, T.; Guo, H.
  3. Biochemistry. 2007, Mar; 46(12): 3784-3792.
  1. 21.   Structural basis for non-catalytic and catalytic activities of ribonuclease III
  2. Ji, X. H.
  3. Acta Crystallographica Section D-Biological Crystallography. 2006, Aug; 62: 933-940.
  1. 22.   Characterization of the murine leukemia virus protease and its comparison with the human immunodeficiency virus type 1 protease
  2. Feher, A.; Boross, P.; Sperka, T.; Miklossy, G.; Kadas, J.; Bagossi, P.; Oroszlan, S.; Weber, I. T.; Tozser, J.
  3. Journal of General Virology. 2006, May; 87: 1321-1330.
  1. 23.   Synthesis, processing, and composition of the virion-associated HTLV-1 reverse transcriptase
  2. Mitchell, M. S.; Tozser, J.; Princler, G.; Lloyd, P. A.; Auth, A.; Derse, D.
  3. Journal of Biological Chemistry. 2006, FEB 17; 281(7): 3964-3971.
  1. 24.   Structural insight into the mechanism of double-stranded RNA processing by ribonuclease III
  2. Gan, J. H.; Tropea, J. E.; Austin, B. P.; Court, D. L.; Waugh, D. S.; Ji, X. H.
  3. Cell. 2006, JAN 27; 124(2): 355-366.
  1. 25.   Design and synthesis of phosphonodifluoromethyl phenylalanine (F(2)Pmp): A useful phosphotyrosyl mimetic
  2. Burke, T. R.
  3. Current Topics in Medicinal Chemistry. 2006 6(14): 1465-1471.
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