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  1. 1.   Two PKA RIa holoenzyme states define ATP as an isoform-specific orthosteric inhibitor that competes with the allosteric activator, cAMP
  2. Lu, Tsan-Wen; Wu, Jian; Aoto, Phillip C; Weng, Jui-Hung; Ahuja, Lalima G; Sun, Nicholas; Cheng, Cecilia Y; Zhang,Ping; Taylor, Susan S
  3. Proceedings of the National Academy of Sciences of the United States of America. 2019, Aug 13; 116(33): 16347-16356.
  1. 2.   Bisubstrate analogue inhibitors of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase: New design with improved properties
  2. Shi, G. B.; Shaw, G.; Liang, Y. H.; Subburaman, P.; Li, Y.; Wu, Y.; Yan, H. G.; Ji, X. H.
  3. Bioorganic & Medicinal Chemistry. 2012, Jan; 20(1): 47-57.
  1. 3.   Role of Protein Conformational Dynamics in the Catalysis by 6-Hydroxymethyl-7, 8-Dihydropterin Pyrophosphokinase
  2. Yan, H. G.; Ji, X. H.
  3. Protein and Peptide Letters. 2011, Apr; 18(4): 328-335.
  1. 4.   Allosteric effects in the marginally stable von Hippel-Lindau tumor suppressor protein and allostery-based rescue mutant design
  2. Liu, J.; Nussinov, R.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2008 105(3): 901-906.
  1. 5.   Is the critical role of loop 3 of Escherichia coli 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase in catalysis due to loop-3 residues arginine-84 and tryptophan-89? Site-directed mutagenesis, biochemical, and crystallographic studies
  2. Li, Y.; Blaszczyk, J.; Wu, Y.; Shi, G. B.; Ji, X. H.; Yan, H. G.
  3. Biochemistry. 2005, JUN 21; 44(24): 8590-8599.
  1. 6.   Determination of the stability constants and oxidation susceptibility of nickel(II) complexes with 2 '-de oxyguano sine 5 '-triphosphate and L-histidine
  2. Kaczmarek, P.; Jezowska-Bojczuk, M.; Bal, W.; Kasprzak, K. S.
  3. Journal of Inorganic Biochemistry. 2005, MAR; 99(3): 737-746.
  1. 7.   Crystal structure of human glutathione S-transferase A3-3 and mechanistic implications for its high steroid isomerase activity
  2. Gu, Y. J.; Guo, J. X.; Pal, A.; Pan, S. S.; Zimniak, P.; Singh, S. V.; Ji, X. H.
  3. Biochemistry. 2004, DEC 21; 43(50): 15673-15679.
  1. 8.   A pivotal role for reductive methylation in the de novo crystallization of a ternary complex composed of Yersinia pestis virulence factors YopN, SycN and YSc
  2. Schubot, F. D.; Waugh, D. S.
  3. Acta Crystallographica Section D-Biological Crystallography. 2004, NOV; 60(Part 11): 1981-1986.
  1. 9.   Coordination mode and oxidation susceptibility of nickel(II) complexes with 2 '-deoxyguanosine 5 '-monophosphate and L-histidine
  2. Jezowska-Bojczuk, M.; Kaczmarek, P.; Bal, W.; Kasprzak, K. S.
  3. Journal of Inorganic Biochemistry. 2004, NOV; 98(11): 1770-1777.
  1. 10.   Essential roles of a dynamic loop in the catalysis of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase
  2. Blaszczyk, J.; Li, Y.; Wu, Y.; Shi, G. B.; Ji, X. H.; Yan, H. G.
  3. Biochemistry. 2004 43(6): 1469-1477.
  1. 11.   Reaction trajectory of pyrophosphoryl transfer catalyzed by 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase
  2. Blaszczyk, J.; Shi, G. B.; Li, Y.; Yan, H. G.; Ji, X. H.
  3. Structure. 2004 12(3): 467-475.
  1. 12.   Conformationally constrained analogues of diacylglycerol. 20. The search for an elusive binding site on protein kinase C through relocation of the carbonyl pharmacophore along the sn-1 side chain of 1,2-diacylglycerol lactones
  2. Tamamura, H.; Sigano, D. M.; Lewin, N. E.; Blumberg, P. M.; Marquez, V. E.
  3. Journal of Medicinal Chemistry. 2004 47(3): 644-655.
  1. 13.   Structures of HIV-1 RT-DNA complexes before and after incorporation of the anti-AIDS drug tenofovir
  2. Tuske, S.; Sarafianos, S. G.; Clark, A. D.; Ding, J. P.; Naeger, L. K.; White, K. L.; Miller, M. D.; Gibbs, C. S.; Boyer, P. L.; Clark, P.; Wang, G.; Gaffney, B. L.; Jones, R. A.; Jerina, D. M.; Hughes, S. H.; Arnold, E.
  3. Nature Structural & Molecular Biology. 2004 11(5): 469-474.
  1. 14.   Caught in the act: visualization of an intermediate in the DNA base-flipping pathway induced by Hhal methyltransferase
  2. Horton, J. R.; Ratner, G.; Banavali, N. K.; Huang, N.; Choi, Y.; Maier, M. A.; Marquez, V. E.; Mackerell, A. D.; Cheng, X. D.
  3. Nucleic Acids Research. 2004 32(13): 3877-3886.
  1. 15.   Engineering of elongation complexes of bacterial and yeast RNA polymerases
  2. Komissarova, N.; Kireeva, M. L.; Becker, J.; Sidorenkov, I.; Kashlev, M.
  3. RNA POLYMERASES AND ASSOCIATED FACTORS, PT D. 2003; 371 : 233-251.
  1. 16.   Dynamic roles of arginine residues 82 and 92 of Escherichia coli 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase: Crystallographic studies
  2. Blaszczyk, J.; Li, Y.; Shi, G. B.; Yan, H. G.; Ji, X. H.
  3. Biochemistry. 2003 42(6): 1573-1580.
  1. 17.   Catalytic roles of arginine residues 82 and 92 of Escherichia coli 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase: Site- directed mutagenesis and biochemical studies
  2. Li, Y.; Wu, Y.; Blaszczyk, J.; Ji, X. H.; Yan, H. G.
  3. Biochemistry. 2003 42(6): 1581-1588.
  1. 18.   Chemical transformation is not rate-limiting in the reaction catalyzed by Escherichia coli 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase
  2. Li, Y.; Gong, Y. C.; Shi, G. B.; Blaszczyk, J.; Ji, X. H.; Yan, H. G.
  3. Biochemistry. 2002 41(27): 8777-8783.
  1. 19.   Shortening of RNA : DNA hybrid in the elongation complex of RNA polymerase is a prerequisite for transcription termination
  2. Komissarova, N.; Becker, J.; Solter, S.; Kireeva, M.; Kashlev, M.
  3. Molecular Cell. 2002 10(5): 1151-1162.
  1. 20.   Transcription termination: Primary intermediates and secondary adducts
  2. Kashlev, M.; Komissarova, N.
  3. Journal of Biological Chemistry. 2002 277(17): 14501-14508.
  1. 21.   Overextended RNA : DNA hybrid as a negative regulator of RNA polymerase II processivity
  2. Kireeva, M. L.; Komissarova, N.; Kashlev, M.
  3. Journal of Molecular Biology. 2000 299(2): 325-335.
  1. 22.   The 8-nucleotide-long RNA : DNA hybrid is a primary stability determinant of the RNA polymerase II elongation complex
  2. Kireeva, M. L.; Komissarova, N.; Waugh, D. S.; Kashlev, M.
  3. Journal of Biological Chemistry. 2000 275(9): 6530-6536.
  1. 23.   Transcriptional repressor ERF is a Ras/mitogen-activated protein kinase target that regulates cellular proliferation
  2. Le Gallic, L.; Sgouras, D.; Beal, G.; Mavrothalassitis, G.
  3. Molecular and Cellular Biology. 1999 19(6): 4121-4133.
  1. 24.   Crucial Role of the Rna-Dna Hybrid in the Processivity of Transcription
  2. Sidorenkov, I.; Komissarova, N.; Kashlev, M.
  3. Molecular Cell. 1998 2(1): 55-64.
  1. 25.   Expression of dominant negative Erk2 inhibits AP-1 transactivation and neoplastic transformation
  2. Watts, R. G.; Huang, C. S.; Young, M. R.; Li, J. J.; Dong, Z. G.; Pennie, W. D.; Colburn, N. H.
  3. Oncogene. 1998 17(26): 3493-3498.
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