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  1. 1.   Genomes and epigenomes of matched normal and tumor breast tissue reveal diverse evolutionary trajectories and tumor-host interactions
  2. Zhu, Bin; Tapinos, Avraam; Koka, Hela; Yi Lee, Priscilla Ming; Zhang, Tongwu; Zhu, Wei; Wang, Xiaoyu; Klein, Alyssa; Lee, DongHyuk; Tse, Gary M; Tsang, Koon-Ho; Wu, Cherry; Hua, Min; Highfill,Chad; Lenz,Petra; Zhou,Weiyin; Wang,Difei; Luo,Wen; Jones,Kristine; Hutchinson,Amy; Hicks,Belynda; Garcia-Closas, Montserrat; Chanock, Stephen; Tse, Lap Ah; Wedge, David C; Yang, Xiaohong R
  3. American Journal of Human Genetics. 2024, Oct 29;
  1. 2.   Hemophagocytic Lymphohistiocytosis Gene Variants in Severe Aplastic Anemia and Their Impact on Hematopoietic Cell Transplantation Outcomes
  2. Rafati, Maryam; McReynolds, Lisa J; Wang, Youjin; Hicks,Belynda; Jones,Kristine; Spellman, Stephen R; He, Meilun; Bolon, Yung-Tsi; Arrieta-Bolaños, Esteban; Saultz, Jennifer N; Lee, Stephanie J; Savage, Sharon A; Gadalla, Shahinaz M
  3. Transplantation and Cellular Therapy. 2024, Aug ; 30(8): 770e1-770e10.
  1. 3.   Oral microbiome and risk of incident head and neck cancer: A nested case-control study
  2. Wu, Zeni; Han, Yongli; Wan, Yunhu; Hua, Xing; Chill, Samantha S; Teshome, Kedest; Zhou, Weiyin; Liu, Jia; Wu, Dongjing; Hutchinson,Amy; Jones,Kristine; Dagnall,Casey; Hicks,Belynda; Liao, Linda; Hallen-Adams, Heather; Shi, Jianxin; Abnet, Christian C; Sinha, Rashmi; Chaturvedi, Anil; Vogtmann, Emily
  3. Oral Oncology. 2023, Jan 05; 137: 106305.
  1. 4.   Systematic Analysis of Kaposi's Sarcoma-associated Herpesvirus Genomes from a Kaposi's Sarcoma (KS) Case-Control Study in Cameroon: Evidence of Dual Infections but No Association Between Viral Sequence Variation and KS Risk
  2. Marshall,Vickie; Fisher, Nicholas C; Goodman,Charles; Cornejo Castro,Elena; Liu, Isabella; Khanal, Sirish; Holdridge,Benjamin; Thorpe, Abigail L; Labo,Nazzarena; Stolka, Kristen B; Hemingway-Foday, Jennifer J; Abassora, Mahamat; N'Dom, Paul; Smith, Jennifer S; Sallah, Neneh; Palser, Anne L; Kellam, Paul; Keele,Brandon; Whitby,Denise
  3. International Journal of Cancer. 2022, May 24;
  1. 5.   Proteogenomic characterization of pancreatic ductal adenocarcinoma
  2. Cao, Liwei; Huang, Chen; Zhou, Daniel Cui; Hu, Yingwei; Lih, T. Mamie; Savage, Sara R.; Krug, Karsten; Clark, David J.; Schnaubelt, Michael; Chen, Lijun; Leprevost, Felipe da Veiga; Eguez, Rodrigo Vargas; Yang, Weiming; Pan, Jianbo; Wen, Bo; Dou, Yongchao; Jiang, Wen; Liao, Yuxing; Shi, Zhiao; Terekhanova, Nadezhda; Cao, Song; Lu, Rita Jui-Hsien; Li, Yize; Liu, Ruiyang; Zhu, Houxiang; Ronning, Peter; Wu, Yige; Wyczalkowski, Matthew A.; Easwaran, Hariharan; Danilova, Ludmila; Mer, Arvind Singh; Yoo, Seungyeul; Wang, Joshua M.; Liu, Wenke; Haibe-Kains, Benjamin; Thiagarajan,Mathangi; Jewell, Scott D.; Hostetter, Galen; Newton, Chelsea J.; Li, Qing Kay; Roehr, Michael H.; Fenyo, David; Wang, Pei; Nesvizhskii, Alexey; Mani, D. R.; Omenn, Gilbert S.; Boja, Emily S.; Mesri, Mehdi; Robles, Ana; Rodriguez, Henry; Bathe, Oliver F.; Chan, Daniel W.; Hruban, Ralph H.; Ding, Li; Zhang, Bing; Zhang, Hui
  3. Cell. 2021, Sep 16; 184(19): 5031-5052.e26.
  1. 6.   Disseminated Mycobacterium marinum in HIV unmasked by Immune Reconstitution Inflammatory Syndrome
  2. Manion, Maura; Dulanto Chiang, Augusto; Pei, Luxin; Wong, Chun-Shu; Khil, Pavel; Hammoud, Dima A; Anderson, Megan; Laidlaw, Elizabeth; Kuriakose,Safia; Lisco, Andrea; Zelazny, Adrian M; Dekker, John P; Sereti, Irini
  3. The Journal of infectious diseases. 2021, Aug 1; 224(3): 453-457.
  1. 7.   TET2 and DNMT3A mutations and exceptional response to 4'-thio-2'-deoxycytidine in human solid tumor models
  2. Yang, Sherry X; Hollingshead, Melinda; Rubinstein, Larry; Nguyen, Dat; Larenjeira, Angelo B A; Kinders,Robert; Difilippantonio, Michael; Doroshow, James H
  3. Journal of Hematology & Oncology. 2021, May 26; 14(1):
  1. 8.   Mini-Factor H Modulates Complement-Dependent IL-6 and IL-10 Release in an Immune Cell Culture (PBMC) Model: Potential Benefits Against Cytokine Storm
  2. Kozma, Gergely Tibor; Mészáros, Tamás; Bakos, Tamás; Hennies, Mark; Bencze, Dániel; Uzonyi, Barbara; Gyorffy, Balázs; Cedrone,Edward; Dobrovolskaia,Marina; Józsi, Mihály; Szebeni, János
  3. Frontiers in Immunology. 2021, Apr 28; 12: 642860.
  1. 9.   Proteogenomic and metabolomic characterization of human glioblastoma
  2. Wang, Liang-Bo; Karpova, Alla; Gritsenko, Marina A.; Kyle, Jennifer E.; Cao, Song; Li, Yize; Rykunov, Dmitry; Colaprico, Antonio; Rothstein, Joseph H.; Hong, Runyu; Stathias, Vasileios; Cornwell, MacIntosh; Petralia, Francesca; Wu, Yige; Reva, Boris; Krug, Karsten; Pugliese, Pietro; Kawaler, Emily; Olsen, Lindsey K.; Liang, Wen-Wei; Song, Xiaoyu; Dou, Yongchao; Wendl, Michael C.; Caravan, Wagma; Liu, Wenke; Zhou, Daniel Cui; Ji, Jiayi; Tsai, Chia-Feng; Petyuk, Vladislav A.; Moon, Jamie; Ma, Weiping; Chu, Rosalie K.; Weitz, Karl K.; Moore, Ronald J.; Monroe, Matthew E.; Zhao, Rui; Yang, Xiaolu; Yoo, Seungyeul; Krek, Azra; Demopoulos, Alexis; Zhu, Houxiang; Wyczalkowski, Matthew A.; McMichael, Joshua F.; Henderson, Brittany L.; Lindgren, Caleb M.; Boekweg, Hannah; Lu, Shuangjia; Baral, Jessika; Yao, Lijun; Stratton, Kelly G.; Bramer, Lisa M.; Zink, Erika; Couvillion, Sneha P.; Bloodsworth, Kent J.; Satpathy, Shankha; Sieh, Weiva; Boca, Simina M.; Schurer, Stephan; Chen, Feng; Wiznerowicz, Maciej; Ketchum, Karen A.; Boja, Emily S.; Kinsinger, Christopher R.; Robles, Ana; Hiltke, Tara; Thiagarajan,Mathangi; Nesvizhskii, Alexey; Zhang, Bing; Mani, D. R.; Ceccarelli, Michele; Chen, Xi S.; Cottingham, Sandra L.; Li, Qing Kay; Kim, Albert H.; Fenyo, David; Ruggles, Kelly; Rodriguez, Henry; Mesri, Mehdi; Payne, Samuel H.; Resnick, Adam C.; Wang, Pei; Smith, Richard D.; Iavarone, Antonio; Chheda, Milan G.; Barnholtz-Sloan, Jill S.; Rodland, Karin D.; Liu, Tao; Ding, Li
  3. Cancer Cell. 2021, Apr 12; 39(4): 509-528.e20.
  1. 10.   Association of HPV genotype 16 lineages with anal cancer histologies among African Americans
  2. Brim, Hassan; Mirabello, Lisa; Bass,Sara; Ford, Debra H; Carethers, John M; Ashktorab, Hassan
  3. Gastroenterology. 2021, Feb; 160(3): 922-924.
  1. 11.   Molecular Features of Cancers Exhibiting Exceptional Responses to Treatment
  2. Wheeler, David A; Takebe, Naoko; Hinoue, Toshinori; Hoadley, Katherine A; Cardenas, Maria F; Hamilton, Alina M; Laird, Peter W; Wang, Linghua; Johnson, Adrienne; Dewal, Ninad; Miller, Vincent; Piñeyro, David; Castro de Moura, Manuel; Esteller, Manel; Shen, Hui; Zenklusen, Jean Claude; Tarnuzzer, Roy; McShane, Lisa M; Tricoli, James V; Williams, Paul M; Lubensky, Irina; O'Sullivan-Coyne, Geraldine; Kohn, Elise C; Little, Richard F; White, Jeffrey; Malik, Shakun; Harris, Lyndsay; Weil, Carol; Chen, Alice P; Karlovich,Chris; Rodgers, Brian; Shankar, Lalitha; Jacobs, Paula; Nolan, Tracy; Hu, Jianhong; Muzny, Donna M; Doddapaneni, Harshavardhan; Korchina, Viktoriya; Gastier-Foster, Julie; Bowen, Jay; Leraas, Kristen; Edmondson,Elijah; Doroshow, James H; Conley, Barbara A; Ivy, S Percy; Staudt, Louis M
  3. Cancer Cell. 2021, Jan 11; 39(1): 38-53.e7.
  1. 12.   Whole Exome Profiling of NSCLC Among African Americans
  2. Arauz, Rony F; Byun, Jung S; Tandon,Mayank; Sinha, Sanju; Kuhn,Skyler; Taylor, Sheryse; Zingone, Adriana; Mitchell, Khadijah A; Pine, Sharon R; Gardner, Kevin; Perez-Stable, Eliseo J; Napoles, Anna M; Ryan, Bríd M
  3. Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer. 2020, DEC; 15(12): 1880-1892.
  1. 13.   Deep Learning for Automated Liver Segmentation to Aid in the Study of Infectious Diseases in Nonhuman Primates
  2. Reza, Syed M S; Bradley, Dara; Aiosa, Nina; Castro, Marcelo; Lee, Ji Hyun; Lee, Byeong-Yeul; Bennett, Richard S; Hensley, Lisa E; Cong, Yu; Johnson, Reed; Hammoud, Dima; Feuerstein, Irwin; Solomon,Jeffrey
  3. Academic radiology. 2020, Nov; 28(Supplement 1): pii: S1076-6332(20)30504-3.
  1. 14.   Discovery, Pharmacological Characterisation and NMR Structure of the Novel µ-Conotoxin SxIIIC, a Potent and Irreversible NaV Channel Inhibitor
  2. McMahon, Kirsten L; Tran, Hue N T; Deuis, Jennifer R; Lewis, Richard J; Vetter, Irina; Schroeder,Christina
  3. Biomedicines. 2020, Oct 02; 8(10): E391.
  1. 15.   Phenotypic and Molecular Epidemiology of ESBL-, AmpC-, and Carbapenemase-Producing Escherichia coli in Northern and Eastern Europe
  2. Sepp, Epp; Andreson, Reidar; Balode, Arta; Bilozor, Anastasia; Brauer, Age; Egorova, Svetlana; Huik,Kristi; Ivanova, Marina; Kaftyreva, Lidia; Kõljalg, Siiri; Kõressaar, Triinu; Makarova, Maria; Miciuleviciene, Jolanta; Pai, Kristiine; Remm, Maido; Rööp, Tiiu; Naaber, Paul
  3. Frontiers in microbiology. 2019, Nov 22; 10: 2465.
  1. 16.   Human papillomavirus 16 sub-lineage dispersal and cervical cancer risk worldwide: Whole viral genome sequences from 7116 HPV16-positive women
  2. Clifford, Gary M.; Tenet, Vanessa; Georges, Damien; Alemany, Laia; Angel Pavon, Miquel; Chen, Zigui; Yeager, Meredith; Cullen,Michael; Boland,Joseph; Bass,Sara; Steinberg, Mia; Raine-Bennett, Tina; Lorey, Thomas; Wentzensen, Nicolas; Walker, Joan; Zuna, Rosemary; Schiffman, Mark; Mirabello, Lisa
  3. Papillomavirus research (Amsterdam, Netherlands). 2019, JUN; 7: 67-74.
  1. 17.   Whole-exome sequencing of nevoid basal cell carcinoma syndrome families and review of Human Gene Mutation Database PTCH1 mutation data
  2. Gianferante, D Matthew; Rotunno, Melissa; Dean, Michael; Zhou, Weiyin; Hicks, Belynda; Wyatt, Kathleen; Jones, Kristine; Wang, Mingyi; Zhu, Bin; Goldstein, Alisa M; Mirabello, Lisa
  3. Molecular genetics & genomic medicine. 2018, Nov; 6(6): 1168-1180.
  1. 18.   Successful use of whole genome amplified DNA from multiple source types for high-density Illumina SNP microarrays
  2. Dagnall, Casey; Morton, Lindsay M; Hicks, Belynda; Li, Shengchao; Zhou, Weiyin; Karlins, Eric; Teshome, Kedest; Chowdhury, Salma; Lashley, Kerrie S; Sampson, Joshua N; Robison, Leslie L; Armstrong, Gregory T; Bhatia, Smita; Radloff, Gretchen A; Davies, Stella M; Tucker, Margaret A; Yeager, Meredith; Chanock, Stephen J
  3. BMC genomics. 2018, Mar 06; 19(1): 182.
  1. 19.   Crystallographic study of red fluorescent protein eqFP578 and its far-red variant Katushka reveals opposite pH-induced isomerization of chromophore
  2. Pletneva, N. V.; Pletnev, V. Z.; Shemiakina, II; Chudakov, D. M.; Artemyev, I.; Wlodawer, A.; Dauter, Z.; Pletnev, S.
  3. Protein Science. 2011, Jul; 20(7): 1265-1274.
  1. 20.   Carcinogenic Effects of "Whole-Life" Exposure to Inorganic Arsenic in CD1 Mice
  2. Tokar, E. J.; Diwan, B. A.; Ward, J. M.; Delker, D. A.; Waalkes, M. P.
  3. Toxicological Sciences. 2011, Jan; 119(1): 73-83.
  1. 21.   Multiple-Cohort Genetic Association Study Reveals CXCR6 as a New Chemokine Receptor Involved in Long-Term Nonprogression to AIDS
  2. Limou, S.; Coulonges, C.; Herbeck, J. T.; van Manen, D.; An, P.; Le Clerc, S.; Delaneau, O.; Diop, G.; Taing, L.; Montes, M.; van't Wout, A. B.; Gottlieb, G. S.; Therwath, A.; Rouzioux, C.; Delfraissy, J. F.; Lelievre, J. D.; Levy, Y.; Hercberg, S.; Dina, C.; Phair, J.; Donfield, S.; Goedert, J. J.; Buchbinder, S.; Estaquier, J.; Schachter, F.; Gut, I.; Froguel, P.; Mullins, J. I.; Schuitemaker, H.; Winkler, C.; Zagury, J. F.
  3. Journal of Infectious Diseases. 2010, Sep; 202(6): 908-915.
  1. 22.   Host Determinants of HIV-1 Control in African Americans
  2. Pelak, K.; Goldstein, D. B.; Walley, N. M.; Fellay, J.; Ge, D.; Shianna, K. V.; Gumbs, C.; Gao, X.; Maia, J. M.; Cronin, K. D.; Hussain, S. K.; Carrington, M.; Michael, N. L.; Weintrob, A. C.; Natl Inst Allergy Infect, D.
  3. Journal of Infectious Diseases. 2010, Apr; 201(8): 1141-1149.
  1. 23.   MONICA: a compact, portable dual gamma camera system for mouse whole-body imaging
  2. Xi, W. Z.; Seidel, J.; Kakareka, J. W.; Pohida, T. J.; Milenic, D. E.; Proffitt, J.; Majewski, S.; Weisenberger, A. G.; Green, M. V.; Choyke, P. L.
  3. Nuclear Medicine and Biology. 2010, Apr; 37(3): 245-253.
  1. 24.   Gene Expression Patterns Induced by HPV-16 L1 Virus-Like Particles in Leukocytes from Vaccine Recipients
  2. Garcia-Pineres, A. J.; Hildesheim, A.; Dodd, L.; Kemp, T. J.; Yang, J.; Fullmer, B.; Harro, C.; Lowy, D. R.; Lempicki, R. A.; Pinto, L. A.
  3. Journal of Immunology. 2009 182(3): 1706-1729.
  1. 25.   Structural Basis for Phototoxicity of the Genetically Encoded Photosensitizer KillerRed
  2. Pletnev, S.; Gurskaya, N. G.; Pletneva, N. V.; Lukyanov, K. A.; Chudakov, D. M.; Martynov, V. I.; Popov, V. O.; Kovalchuk, M. V.; Wlodawer, A.; Dauter, Z.; Pletnev, V.
  3. Journal of Biological Chemistry. 2009 284(46): 32028-32039.
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