A significant number of third-party applications are installed on the FRCE cluster. A form is provided for requesting new software installs or upgrades.
- An up-to-date list of applications and versions can be gotten with the
module availcommand at the shell prompt. - For python3, use
pip3 listto see available packages. This will work for any version of python loaded through modules. - For R, use
R-packages, a locally-written script, to list all installed packages. - For perl, use
cpan -l.
A SLURM script is provided for each software package when the FRCE administrators have knowledge to write one. Any contributions of scripts and sample datasets are appreciated and will be incorporated into the package page.
ABCS and EIT are cooperating to maintain a searchable database of applications installed on the FRCE cluster. The AppDB site is has an intuitive interface and provides the most useful information about available applications. Many thanks to the ABCS for providing this service.
Modules Command
Modules
Computational Chemistry
Computational chemistry packages
Cryo-Electron Microscopy
Cryo-EM packages
Genomics/High Throughput Sequencing
HTS software packages
Image Analysis
Image Analysis Tools
Linkage/Phylogenetics
Phylogenetics Tools
Machine/Deep Learning
Machine & Deep Learning Packages
Mass Spectrometry
Mass Spectrometry Packages
Molecular Dynamics Modeling/Simulation
Molecular Dynamics Modeling/Simulation Packages
Structural Biology
Structural Biology packages
Systems Biology
Systems biology packages
X-Ray/NMR
X-Ray/NMR support software
Uncategorized Packages
Software useful for multiple workflows.
Scientific Database Support
Access to various Oracle and Mariadb database servers is supported from FRCE execute nodes. The HPC admin team does not manage accounts on the database servers but can put users in contact with the DBA personnel