Training when and where you need it!
The Scientific Library provides a variety of FREE hands-on classes. For a sample of recent class sessions, select class
title below to see the description. If you prefer a Customized Session,
one of our Librarians will meet with you or your group in our Technology Training Lab in Building 549, the ATRF Library (E2003/2nd Floor), or we would be happy to
come to your location. At times, expert instructors are invited to National Cancer Institute at Frederick (NCI-F) to teach certain classes, and classes may also
be held at other locations.
Current and Past Class Descriptions || NIH Videocasting and Podcasting website
|| Resource Tutorials
Request Customized or One-on-OneTraining ||
ACD Labs Online NMR Predictors, which are made available to all FNLCR and NCI at Frederick personnel by the Scientific Library, provides the tools to
predict spectra for novel compounds, and to search the NMR Predictors databases to find known spectra for compounds based on experimental information you may
have gathered from a sample. For questions about this database, please contact Alan Doss in the Library at email@example.com or by phone at x6249.
When you are not finding the information you need, these tips may help focus your search to get the right results.
Concepts learned in this class may be applied to multiple types of sources.
Web of Science and Scopus show the number of times an article has been cited, but did you know they can also provide an author's h-index and citation numbers?
These resources even allow you to compare journal impact metrics. Explore all of these features in this hands-on session.
Ensembl provides a colorful and attractive interface for discovering interesting features aligned to the Reference Human Genome and to genomes of other important species.
Learn how to locate and download information about genes and their associated transcripts, variants, regulatory elements, phenotypes, and more.
Web of Science is a multi-purpose tool that offers a number of possibilities for searching. It can provide references to journal articles and meetings proceedings,
links to many full-text publications, valuable information on who is citing published works, and convenient access to companion products such as ResearcherID,
EndNote Web, and Journal Citation Reports. Attend this hands-on class to learn about all facets of Web of Science.
In this class, we will take a brief walk through two of the most widely used genome browsers, the University of California Santa Cruz (UCSC) Genome Browser,
and the Ensembl Genome Browser, from the European Molecular Biology Laboratory, to learn how to quickly find what is known about specific genomic regions,
genes, SNPs, and more.
The Mouse Genome Informatics Resource provides mouse genetic, genomic and biological data relevant to the study of human health and disease.
In this class you will learn how to find answers to questions like: Is there a mouse model available for this human disease? What primers will amplify this mouse gene?
What Gene Ontology terms do these mouse genes share in common? Do any mice express Cre in this specific tissue? What expression data are available from mice mutated at this locus?
PubChem, a rich source of Bioactivity data for small molecules, gathers its data from many screening projects as well as from more
focused projects harvested from the scientific literature, and presents this data freely to the scientific community in standardized formats,
making it easy to track down what compounds have been tested in which bioassays with what results. It also summarizes laboratory safety data,
physical property data, patents, and other useful information about a compound all on a single report page for that compound. In this class,
we will learn how to navigate PubChem to 1) find compounds using simple and advanced text based search techniques; 2) find compounds using
structure and substructure based search; 3) find compounds similar to a known bioactive compound; 4) find biological screens and screening
results of interest; 5) Use PubChem tools tool to help make sense of all the data
In this class, we will take a closer look at the suite of toxicology knowledge bases from the National Library of Medicine (NLM) that provide information
on the toxicological effects of drugs and other chemicals. These include chemicals that interact with genes, carcinogenic compounds, toxic compounds found
in the home and in the workplace, drugs that cause adverse effects in nursing infacts, toxic compounds known to be released into the environment,
and alternatives to animal testing.
This class is designed to teach students how to retrieve the most recent citations from a variety of databases, allowing them to stay up-to-date on new
research in any subject area. This class focuses on PubMed and Web of Science, but also mentions several other databases. NOTE: This class does NOT cover
basic searching instructions. Participants should be knowledgeable in database searching.
The Scientific Library is happy to host MetaDrug trainer Matthew Wampole of Thomson Reuters for a hands-on session.
MetaDrug is a manually curated knowledge database and software suite that can help you predict possible
Indications, Modes of Action, ADME, Phase I and Phase II metabolites, and Toxicities of novel compounds.
It also allows you to view the predicted activities on pathway maps that can be validated by uploading experimental
data for the compounds, once available. In addition, it allows you to create your own custom QSAR models, and can help you
find new uses for existing drugs.
Upcoming Session: Monday, December 18, 1:00 p.m. – 2:30 p.m.
Explore Google services beyond the basics. Learn to construct more complicated and advanced searches in Google, to use Google as a reference tool
(ex. Calculator), and learn more about Google Scholar, Google Book Search, Google Reader, and more.
Learn to use and access resources associated with human sequence variations and phenotypes associated with specific human genes and phenotypes. The workshop will emphasize the Gene,
MedGen and ClinVar resources for searching by gene, phenotype and variant respectively. Learn how to map variation from
dbSNP and dbVAR onto genes, transcripts, proteins, and genomic regions and how to find genetic tests in GTR. You will also gain experience using
additional tools and viewers including PheGenI, a browser for genotype associations.
This workshop highlights important features and demonstrates the practical aspects of using the sequence similarity service, NCBI BLAST. Learn about useful features of
the service including the new genome BLAST; Align-2-Sequences; organism limits and other filters; formatting options and downloading options; and TreeView displays.
You will find, display and analyze microarray and sequence-based expression data that are stored in the Gene Expression
Omnibus (GEO), Sequence Read Archive (SRA), UniGene, and Epigenomics databases. Learn how to use these tools to
investigate the potential for expression of transcript splice variants and examine the levels of expression under
varied experimental conditions as well as in different tissues and disease states.
This workshop provides an introduction to the NCBI molecular databases and how to access the data using the Entrez
text-based search system and BLAST sequence similarity search tool. You will learn the varied types of available molecular data, and how to find and display sequence, variation, genome information using organism sources (Taxonomy). You will also learn about data sources (Bioproject) with an emphasis on using the gene as an organizing concept for navigating the various integrated databases, including Gene, Nucleotide, Protein, dbSNP and others.
Since 1997 the Scientific Library has maintained a database of scientific publications authored by employees of NCI at Frederick. This half-hour session provides a quick introduction
to this helpful resource.
Thursday, December 14, 2:30 p.m. – 3:30 p.m.
New employees are encouraged to attend our monthly Library Orientation to learn about the Scientific Library and all the
services it offers. Attendees will see a demonstration of OneSearch, Online Journals & eBooks, Library's Online Catalog,
practice navigating the Library's Web page, learn about Library services, and tour the Library. Attendees should bring
PIV Cards or NCI-F identification cards to obtain a Library account enabling them to use their PIV Card Number or Library
barcode to check out Library materials, make online requests, and access the Library's web page from off-site locations.
Registration not required.
You probably use PubMed daily, but do you use it completely? Do you know what MeSH is? Can you set up Alerts to receive current
information? Do you use "My NCBI?" Are you able to move references from PubMed into EndNote? Are you having trouble locating
full-text journal articles? If you take time now to attend this hands-on training, then your future PubMed searching sessions
will be faster and more productive, and will yield more relevant results.
Tuesday, December 12, 12:00 p.m. – 12:30 p.m.
A new kind of PubMed training is now available. These sessions are different in both format and content. They will be online
only via WebEx, available from your laptops and office desktops, will last 30 minutes or less, and will be held at lunchtime.
The sessions will cover specific areas of PubMed, such as author searching, creating alerts, using My NCBI, etc.
In this class, you will learn about the massive amounts of information that flows into the National Center for Biotechnology Information (NCBI),
how it is organized into related databases, and most importantly, how researchers can navigate this system of databases to quickly access the
information most relevant to their needs.
This training session is designed to give you a brief overview of several chemistry resources available to FNLCR and NCI at Frederick researchers.
Among the resources covered in this class are: PubChem - providing information on the biological activities of small molecules, Reaxys - providing
workflow tools designed to support planning optimization in chemistry and related disciplines, and the Enhanced NCI Database Browser - providing
access to information about the activities of compounds tested against the NCI 60 panel of cell lines.
QUOSA automates scientific literature workflows, allowing users to find, view and share full-text scientific articles. It allows you to implement literature alerts
from multiple databases from within a single interface, automatically pulls in the pdf documents for the citations retrieved, and allows you to
organize these documents and search within them for quick retrieval of pertinent information.
Learn about this unique, web-based chemistry database from Elsevier Science, consisting of deeply excerpted compounds and related factual properties,
reaction and synthesis information as well as bibliographic data, navigated and displayed in a user-friendly interface.
Upcoming Session: Thursday, November 30, 10:00 a.m. – 11:00 a.m.
If you want to get a complete analysis of your publications' research impact, Scopus will be a helpful addition to your research. Scopus is another source (in addition to Web of Science) that not only allows you to search the scientific literature, but also helps you to see and track who is citing publications of interest to you. This class will introduce you to the citation analysis tools within Scopus, as well as its search options.
Go beyond the journal impact factor and find out how altmetrics and article-level metrics can show the level of attention an individual article or
other research output receives from social media sites, news outlets, and other sources.
When you must do an annual report of your publications, the task of tracking your citations -- from the time of publication, and then as required for
government-funded research, depositing the article in PubMed Central, to an inclusive final report -- can be daunting. In this class, instructors will
guide you through the process, touching on EndNote, PubMed Central and the NIH Manuscript Submission System, and various "Alerts" options.
Learn about one of the most widely used genome browsers, the University of California Santa Cruz (UCSC) Genome Browser to learn how to
find what is known about specific genomic regions, genes, SNPs, and more.
Wednesday, November 29, 10.00 a.m. - 11:00 a.m.
The Scientific Library offers thousands of electronic journals and books in addition to the other databases and resources
it provides for you electronically. This one-hour session, offered via WebEx, introduces you to all the Library has in its
virtual collection, as well as the Library services that are just a click away.
Upcoming Session: Thursday, December 14, 10:00 a.m. – 12:00 p.m
Zotero allows you, at no charge, to obtain citations and pull in related PDF documents, video files, snapshots of webpages,
and more, with one click from almost any reference source. Organize your research quickly and easily and cite papers in
the publisher-defined format.