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Precise Characterization of KRAS4B Proteoforms by Combining Immunoprecipitation with Top-Down Mass Spectrometry

  1. Author:
    Adams, Lauren M.
    Dehart,Caroline
    Kelleher, Neil L.
  2. Author Address

    Northwestern Univ, Dept Mol Biosci, Evanston, IL 60208 USA.Frederick Natl Lab Canc Res, NCI RAS Initiat, Frederick, MD USA.Northwestern Univ, Prote Ctr Excellence, Evanston, IL USA.Northwestern Univ, Dept Chem, Evanston, IL USA.
    1. Year: 2021
  1. Book Title: Ras Activity and Signaling
  2. Humana Press, Inc.
    1. 2262
    2. Pages: 47-64
  3. Type of Work: Book Chapter
  4. ISBN: 978-1-0716-1189-0
  1. Abstract:

    The characterization of biologically relevant post-translational modifications (PTMs) on KRAS4B has historically been carried out through methodologies such as immunoblotting with PTM-specific antibodies or peptide-based proteomic methods. While these methods have the potential to identify a given PTM on KRAS4B, they are incapable of characterizing or distinguishing the different molecular forms or proteoforms of KRAS4B from those of related RAS isoforms. We present a method that combines immunoprecipitation of KRAS4B with top-down mass spectrometry (IP-TDMS), thus enabling the precise characterization of intact KRAS4B proteoforms. We provide detailed protocols for the IP, LC-MS/MS, and data analysis comprising a successful IP-TDMS assay in the contexts of cancer cell lines and tissue samples.

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External Sources

  1. DOI: 10.1007/978-1-0716-1190-6_3
  2. PMID: 33977470
  3. WOS: 000706804700004

Library Notes

  1. Fiscal Year: FY2021-2022
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