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  1. 1.   The human oral microbiome and risk of colorectal cancer within three prospective cohort studies in the United States
  2. Vogtmann, Emily; Yano, Yukiko; Zouiouich, Semi; Hua,Xing; Wan, Yunhu; Purandare, Vaishnavi; Li, Shilan; Dagnall,Casey; Jones, Kristine; Hicks,Belynda; Hutchinson,Amy; Caporaso, J Gregory; Wheeler, William; Huang, Wen-Yi; Freedman, Neal D; Sandler, Dale P; Beane Freeman, Laura E; Liao, Linda M; Gail, Mitchell H; Shi, Jianxin; Abnet, Christian C; Sinha, Rashmi
  3. Cancer. 2025, Mar 15; 131(6): e35802.
  1. 2.   Structure of Helicobacter pylori dihydroneopterin aldolase suggests a fragment-based strategy for isozyme-specific inhibitor design
  2. Shaw,Gary; Fan,Lixin; Cherry,Scott; Shi,Genbin; Tropea, Joseph E; Ji,Xinhua
  3. Current Research in Structural Biology. 2023, Jan 30; 5: 100095.
  1. 3.   Stealth oxime ether lipid vesicles promote delivery of functional DsiRNA in human lung cancer A549 tumor bearing mouse xenografts
  2. Puri,Anu; Ibrahim, Faisal; O'Reilly Beringhs, André; Isemann, Camryn; Zakrevsky, Paul; Whittenburg, Abigail; Hargrove, Derek; Kanai,Tapan; Dillard, Rebecca S; de Val, Natalia; Nantz, Michael H; Lu, Xiuling; Shapiro,Bruce
  3. Nanomedicine : nanotechnology, biology, and medicine. 2022, Jun 04; 102572.
  1. 4.   Discovery and Optimization of 2H-1 lambda(2)-Pyridin-2-one Inhibitors of Mutant Isocitrate Dehydrogenase 1 for the Treatment of Cancer
  2. Rohde, Jason M.; Karavadhi, Surendra; Pragani, Rajan; Liu, Li; Fang, Yuhong; Zhang, Weihe; McIver, Andrew; Zheng, Hongchao; Liu, Qingyang; Davis, Mindy; Urban, Daniel J.; Lee, Tobie D.; Cheff, Dorian M.; Hollingshead,Melinda; Henderson, Mark J.; Martinez, Natalia J.; Brimacombe, Kyle R.; Yasgar, Adam; Zhao, Wei; Klumpp-Thomas, Carleen; Michael, Sam; Covey, Joseph; Moore,Bill; Stott, Gordon M.; Li, Zhuyin; Simeonov, Anton; Jadhav, Ajit; Frye, Stephen; Hall, Matthew D.; Shen, Min; Wang, Xiaodong; Patnaik, Samarjit; Boxer, Matthew B.
  3. Journal of Medicinal Chemistry. 2021, Apr 22; 64(8): 4913-4946.
  1. 5.   The Role of Conformational Dynamics in the Recognition and Regulation of Ubiquitination
  2. Khago, Domarin; Fucci,Ian; Byrd,Robert
  3. Molecules (Basel, Switzerland). 2020, Dec 15; 25(24):
  1. 6.   Cryo-EM Structures of SARS-CoV-2 Spike without and with ACE2 Reveal a pH-Dependent Switch to Mediate Endosomal Positioning of Receptor-Binding Domains
  2. Zhou, Tongqing; Tsybovsky,Yaroslav; Gorman, Jason; Rapp, Micah; Cerutti, Gabriele; Chuang, Gwo-Yu; Katsamba, Phinikoula S; Sampson, Jared M; Schön, Arne; Bimela, Jude; Boyington, Jeffrey C; Nazzari, Alexandra; Olia, Adam S; Shi, Wei; Sastry, Mallika; Stephens,Tyler; Stuckey, Jonathan; Teng, I-Ting; Wang, Pengfei; Wang, Shuishu; Zhang, Baoshan; Friesner, Richard A; Ho, David D; Mascola, John R; Shapiro, Lawrence; Kwong, Peter D
  3. Cell Host & Microbe. 2020, Dec 9; 28: 867-+.
  1. 7.   Deleterious effects of carbon-carbon dipolar coupling on RNA NMR dynamics
  2. Nam, Hyeyeon; Becette, Owen; LeBlanc, Regan M; Oh, Daniel; Case, David A; Dayie, Theodore K
  3. Journal of biomolecular NMR. 2020, May 03;
  1. 8.   Molecular alterations induced by Yersinia pestis, dengue virus and Staphylococcal enterotoxin B under severe stress
  2. Muhie, Seid; Campbell,Ross; Gautam, Aarti; Hammamieh, Rasha; Cummings, Christiano; Jett, Marti
  3. Brain, behavior, and immunity. 2019, AUG; 80: 725-741.
  1. 9.   RNA-Protein Interactions Prevent Long RNA Duplex Formation: Implications for the Design of RNA-Based Therapeutics
  2. Bindewald, Eckart; Dai, Lisheng; Kasprzak, Wojciech; Kim, Taejin; Gu, Shuo; Shapiro, Bruce
  3. MOLECULES. 2018, Dec; 23(12):
  1. 10.   Plasma metabolomic profiling of a ketamine and placebo crossover trial of major depressive disorder and healthy control subjects
  2. Moaddel, Ruin; Shardell, Michelle; Khadeer, Mohammed; Lovett, Jacqueline; Kadriu, Bashkim; Ravichandran, Ravi; Morris, Patrick J; Yuan, Peixiong; Thomas, Craig J; Gould, Todd D; Ferrucci, Luigi; Zarate, Carlos A
  3. Psychopharmacology. 2018, Oct; 235(10): 3017-3030.
  1. 11.   Unraveling the molecular mechanism of interactions of the Rho GTPases Cdc42 and Rac1 with the scaffolding protein IQGAP2
  2. Ozdemir, E Sila; Jang, Hyunbum; Gursoy, Attila; Keskin, Ozlem; Li, Zhigang; Sacks, David B; Nussinov, Ruth
  3. The Journal of Biological Chemistry. 2018, Mar 9; 293(10): 3685-3699.
  1. 12.   A mutational comparison of adult and adolescent and young adult (AYA) colon cancer
  2. Tricoli, James V; Boardman, Lisa A; Patidar, Rajesh; Sindiri, Sivasish; Jang, Jin S; Walsh, William; McGregor, Paul M; Camalier, Corinne; Mehaffey, Michele G; Furman, Wayne L; Bahrami, Armita; Williams, Mickey; Lih, Chih-Jian; Conley, Barbara A; Khan, Javed
  3. Cancer. 2018, Mar 1; 124(5): 1070-1082.
  1. 13.   NADPH oxidase 5 (NOX5) - induced reactive oxygen signaling modulates normoxic HIF-1a and p27(Kip1) expression in malignant melanoma and other human tumors
  2. Antony, Smitha; Jiang, Guojian; Wu, Yongzhong; Meitzler, Jennifer L; Makhlouf, Hala R; Haines, Diana; Butcher, Donna; Hoon, Dave S; Ji, Jiuping; Zhang, Yiping; Juhasz, Agnes; Lu, Jiamo; Liu, Han; Dahan, Iris; Konate, Mariam; Roy, Krishnendu K; Doroshow, James H
  3. Molecular Carcinogenesis. 2017, Dec; 56(12): 2643-2662.
  1. 14.   NADPH oxidase 1 supports proliferation of colon cancer cells by modulating reactive oxygen species-dependent signal transduction
  2. Juhasz, Agnes; Markel, Susan; Gaur, Shikha; Liu, Han; Lu, Jiamo; Jiang, Guojian; Wu, Xiwei; Antony, Smitha; Wu, Yongzhong; Melillo, Giovanni; Meitzler, Jennifer L; Haines, Diana; Butcher, Donna; Roy, Krishnendu; Doroshow, James H
  3. Journal of Biological Chemistry. 2017, May 12; 292(19): 7866-7887.
  1. 15.   Reverse Transcription in the Saccharomyces cerevisiae Long-Terminal Repeat Retrotransposon Ty3
  2. Rausch, Jason; Miller, Jennifer; Legrice, Stuart
  3. VIRUSES-BASEL. 2017, Mar; 9(3):
  1. 16.   Structural Basis for the Failure of the C1 Domain of Ras Guanine Nucleotide Releasing Protein 2 (RasGRP2) to Bind Phorbol Ester with High Affinity.
  2. Czikora, Agnes; Lundberg, Daniel J; Abramovitz, Adelle; Lewin, Nancy E; Kedei, Noemi; Peach, Megan L; Zhou, Xiaoling; Merritt, Raymond C; Craft, Elizabeth A; Braun, Derek C; Blumberg, Peter M
  3. The Journal of biological chemistry. 2016, May 20; 291(21): 11133-47.
  1. 17.   Farnesylated and methylated KRAS4b: high yield production of protein suitable for biophysical studies of prenylated protein-lipid interactions
  2. Gillette, W. K.; Esposito, D.; Abreu Blanco, M.; Alexander, P.; Bindu, L.; Bittner, C.; Chertov, O.; Frank, P. H.; Grose, C.; Jones, J. E.; Meng, Z.; Perkins, S.; Van, Q.; Ghirlando, R.; Fivash, M.; Nissley, D. V.; McCormick, F.; Holderfield, M.; Stephen, A. G.
  3. Scientific Reports. 2015 5: 15916.
  1. 18.   The effects of RNase H inhibitors and nevirapine on the susceptibility of HIV-1 to AZT and 3TC
  2. Davis, C. A.; Parniak, M. A.; Hughes, S. H.
  3. Virology. 2011, Oct; 419(2): 64-71.
  1. 19.   CCL5: A Double-Edged Sword in Host Defense Against the Hepatitis C Virus
  2. Katsounas, A.; Schlaak, J. F.; Lempicki, R. A.
  3. International Reviews of Immunology. 2011, Oct-Dec; 30(5-6): 366-378.
  1. 20.   Identification and characterization of a novel folliculin-interacting protein FNIP2
  2. Hasumi, H.; Baba, M.; Hong, S. B.; Hasumi, Y.; Huang, Y.; Yao, M.; Valera, V. A.; Linehan, W. M.; Schmidt, L. S.
  3. Gene. 2008 415(1-2): 60-67.
  1. 21.   A microarray analysis for differential gene expression in the soybean genome using Bioconductor and R
  2. Alvord, W. G.; Roayaei, J. A.; Quinones, O. A.; Schneider, K. T.
  3. Briefings in Bioinformatics. 2007, Nov; 8(6): 415-431.
  1. 22.   Mechanisms of guanosine triphosphate hydrolysis by Ras and Ras-GAP proteins as rationalized by ab initio QM/MM simulations
  2. Grigorenko, B. L.; Nemukhin, A. V.; Shadrina, M. S.; Topol, I. A.; Burt, S. K.
  3. Proteins-Structure Function and Bioinformatics. 2007, Feb; 66(2): 456-466.
  1. 23.   Whole genome amplification of buccal cytobrush DNA collected for molecular epidemiology studies
  2. Moore, L. E.; Bergen, A. W.; Haque, K. A.; Qi, Y.; Castle, P.; Chanock, S. J.; Egan, K.; Newcomb, P.; Titus-Ernstoff, L.; Alguacil, J.; Rothman, N.; Garcia-Closas, M.
  3. Biomarkers. 2007 12(3): 303-312.
  1. 24.   Effect of posttranscriptional regulatory elements on transgene expression and virus production in the context of retrovirus vectors
  2. Hlavaty, J.; Schittmayer, M.; Stracke, A.; Jandl, G.; Knapp, E.; Felber, B. K.; Salmons, B.; Gunzburg, W. H.; Renner, M.
  3. Virology. 2005, OCT 10; 341(1): 1-11.
  1. 25.   C to A single nucleotide polymorphism in intron 18 of the human MST1R (RON) gene that maps at 3p21.3
  2. Angeloni, D.; Duh, F. M.; Moody, M.; Dean, M.; Zabarovsky, E. R.; Sentchenko, V.; Braga, E.; Lerman, M. I.
  3. Molecular and Cellular Probes. 2003, APR-JUN; 17(2-3): 55-57.
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