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  1. 1.   Autonomous System for Tumor Resection (ASTR) - Dual-Arm Robotic Midline Partial Glossectomy
  2. Ge, Jiawei; Kam, Michael; Opfermann, Justin D; Saeidi, Hamed; Leonard, Simon; Mady, Leila J; Schnermann,Martin; Krieger, Axel
  3. IEEE Robotics and Automation Letters. 2024, Feb; 9(2): 1166-1173.
  1. 2.   Non-specific and specific DNA binding modes of bacterial histone, HU, separately regulate distinct physiological processes through different mechanisms
  2. Verma, Subhash C; Harned,Adam; Narayan,Kedar; Adhya, Sankar
  3. Molecular Microbiology. 2023, Jan 27;
  1. 3.   Recapitulation of cell-like KRAS4b membrane dynamics on complex biomimetic membranes
  2. Shrestha,Rebika; Chen,De; Frank,Peter; Nissley,Dwight; Turbyville,Tommy
  3. iScience. 2021, Dec 10; 25(1):
  1. 4.   RNF219 attenuates global mRNA decay through inhibition of CCR4-NOT complex-mediated deadenylation
  2. Poetz, Fabian; Corbo,Joshua; Levdansky,Yevgen; Spiegelhalter, Alexander; Lindner, Doris; Magg, Vera; Lebedeva, Svetlana; Schweiggert, Jorg; Schott, Johanna; Valkov,Eugene; Stoecklin, Georg
  3. Nature Communications. 2021, Dec 9; 12(1):
  1. 5.   Nonameric structures of the cytoplasmic domain of FlhA and SctV in the context of the full-length protein
  2. Kuhlen, Lucas; Johnson,Steven; Cao, Jerry; Deme,Justin; Lea,Susan
  3. PLOS ONE. 2021, Jun 18; 16(6):
  1. 6.   Conservation of copy number profiles during engraftment and passaging of patient-derived cancer xenografts
  2. Woo, Xing Yi; Giordano, Jessica; Srivastava, Anuj; Zhao, Zi-Ming; Lloyd, Michael W.; de Bruijn, Roebi; Suh, Yun-Suhk; Patidar, Rajesh; Chen,Li; Scherer, Sandra; Bailey, Matthew H.; Yang, Chieh-Hsiang; Cortes-Sanchez, Emilio; Xi, Yuanxin; Wang, Jing; Wickramasinghe, Jayamanna; Kossenkov, Andrew V.; Rebecca, Vito W.; Sun, Hua; Mashl, R. Jay; Davies, Sherri R.; Jeon, Ryan; Frech, Christian; Randjelovic, Jelena; Rosains, Jacqueline; Galimi, Francesco; Bertotti, Andrea; Lafferty, Adam; O'Farrell, Alice C.; Modave, Elodie; Lambrechts, Diether; ter Brugge, Petra; Serra, Violeta; Marangoni, Elisabetta; El Botty, Rania; Kim, Hyunsoo; Kim, Jong-Il; Yang, Han-Kwang; Lee, Charles; Dean, Dennis A.; Davis-Dusenbery, Brandi; Evrard, Yvonne A.; Doroshow, James H.; Welm, Alana L.; Welm, Bryan E.; Lewis, Michael T.; Fang, Bingliang; Roth, Jack A.; Meric-Bernstam, Funda; Herlyn, Meenhard; Davies, Michael A.; Ding, Li; Li, Shunqiang; Govindan, Ramaswamy; Isella, Claudio; Moscow, Jeffrey A.; Trusolino, Livio; Byrne, Annette T.; Jonkers, Jos; Bult, Carol J.; Medico, Enzo; Chuang, Jeffrey H.
  3. Nature Genetics. 2021, Jan; 53(1): 86-99.
  1. 7.   Spatial density and diversity of architectural histology in prostate cancer: influence on diffusion weighted magnetic resonance imaging
  2. Harmon,Stephanie; Brown, G Thomas; Sanford, Thomas; Mehralivand, Sherif; Shih, Joanna H; Xu, Sheng; Merino, Maria J; Choyke, Peter L; Pinto, Peter A; Wood, Bradford J; McKenney, Jesse K; Turkbey, Baris
  3. Quantitative imaging in medicine and surgery. 2020, Feb; 10(2): 326-339.
  1. 8.   Structure of the primed state of the ATPase domain of chromatin remodeling factor ISWI bound to the nucleosome
  2. Chittori, Sagar; Hong, Jingjun; Bai, Yawen; Subramaniam,Sriram
  3. Nucleic acids research. 2019, SEP 26; 47(17): 9400-9409.
  1. 9.   Myc Regulates Chromatin Decompaction and Nuclear Architecture during B Cell Activation
  2. Kieffer-Kwon, Kyong-Rim; Nimura, Keisuke; Rao, Suhas S P; Xu, Jianliang; Jung, Seolkyoung; Pekowska, Aleksandra; Dose, Marei; Stevens, Evan; Mathe, Ewy; Dong, Peng; Huang, Su-Chen; Ricci, Maria Aurelia; Baranello, Laura; Zheng, Ying; Tomassoni Ardori, Francesco; Resch, Wolfgang; Stavreva, Diana; Nelson, Steevenson; McAndrew, Michael; Casellas, Adriel; Finn, Elizabeth; Gregory, Charles; St Hilaire, Brian Glenn; Johnson, Steven M; Dubois, Wendy; Cosma, Maria Pia; Batchelor, Eric; Levens, David; Phair, Robert D; Misteli, Tom; Tessarollo, Lino; Hager, Gordon; Lakadamyali, Melike; Liu, Zhe; Floer, Monique; Shroff, Hari; Aiden, Erez Lieberman; Casellas, Rafael
  3. Molecular Cell. 2017, Aug 17; 67(4): 566-578.
  1. 10.   Fast and accurate modeling of protein-protein interactions by combining template-interface-based docking with flexible refinement
  2. Tuncbag, N.; Keskin, O.; Nussinov, R.; Gursoy, A.
  3. Proteins-Structure Function and Bioinformatics. 2012, Apr; 80(4): 1239-1249.
  1. 11.   Predicting protein-protein interactions on a proteome scale by matching evolutionary and structural similarities at interfaces using PRISM
  2. Tuncbag, N.; Gursoy, A.; Nussinov, R.; Keskin, O.
  3. Nature Protocols. 2011, Sep; 6(9): 1341-1354.
  1. 12.   Processes of fungal proteome evolution and gain of function: gene duplication and domain rearrangement
  2. Cohen-Gihon, I.; Sharan, R.; Nussinov, R.
  3. Physical Biology. 2011, Jun; 8(3): 9.
  1. 13.   Conformational ensembles, signal transduction and residue hot spots: Application to drug discovery
  2. Ozbabacan, S. E. A.; Gursoy, A.; Keskin, O.; Nussinov, R.
  3. Current Opinion in Drug Discovery & Development. 2010, Sep; 13(5): 527-537.
  1. 14.   Energetic determinants of protein binding specificity: Insights into protein interaction networks
  2. Carbonell, P.; Nussinov, R.; del Sol, A.
  3. Proteomics. 2009 9(7): 1744-1753.
  1. 15.   Disease-specific gene repositioning in breast cancer
  2. Meaburn, K. J.; Gudla, P. R.; Khan, S.; Lockett, S. J.; Misteli, T.
  3. Journal of Cell Biology. 2009 187(6): 801-812.
  1. 16.   Computational strategies for the automated design of RNA nanoscale structures from building blocks using NanoTiler
  2. Bindewald, E.; Grunewald, C.; Boyle, B.; O'Connor, M.; Shapiro, B. A.
  3. Journal of Molecular Graphics & Modelling. 2008 27(3): 299-308.
  1. 17.   Restricted mobility of conserved residues in protein-protein interfaces in molecular simulations
  2. Yogurtcu, O. N.; Erdemli, S. B.; Nussinov, R.; Turkay, M.; Keskin, O.
  3. Biophysical Journal. 2008 94(9): 3475-3485.
  1. 18.   Modular architecture of protein structures and allosteric communications: potential implications for signaling proteins and regulatory linkages
  2. del Sol, A.; Arauzo-Bravo, M. J.; Moya, D. A.; Nussinov, R.
  3. Genome Biology. 2007 8(5):
  1. 19.   Designing a nanotube using naturally occurring protein building blocks
  2. Tsai, C. J.; Zheng, J.; Nussinov, R.
  3. Plos Computational Biology. 2006, Apr; 2(4): 311-319.
  1. 20.   Astrocytes promote myelination in response to electrical impulses
  2. Ishibashi, T.; Dakin, K. A.; Stevens, B.; Lee, P. R.; Kozlov, S. V.; Stewart, C. L.; Fields, R. D.
  3. Neuron. 2006, Mar; 49(6): 823-832.
  1. 21.   Molecular architecture and ligand recognition determinants for T4 RNA ligase
  2. El Omari, K.; Ren, J.; Bird, L. E.; Bona, M. K.; Klarmann, G.; Legrice, S. F. J.; Stammers, D. K.
  3. Journal of Biological Chemistry. 2006, JAN 20; 281(3): 1573-1579.
  1. 22.   Allellic variants in regulatory regions of cyclooxygenase-2: association with advanced colorectal adenoma
  2. Ali, I. U.; Luke, B. T.; Dean, M.; Greenwald, P.
  3. British Journal of Cancer. 2005, OCT 17; 93(8): 953-959.
  1. 23.   TRAF2 plays a key, nonredundant role in LIGHT-lymphotoxin beta receptor signaling
  2. Kim, Y. S.; Nedospasov, S. A.; Liu, Z. G.
  3. Molecular and Cellular Biology. 2005, MAR; 25(6): 2130-2137.
  1. 24.   Favorable scaffolds: proteins with different sequence, structure and function may associate in similar ways
  2. Keskin, O.; Nussinov, R.
  3. Protein Engineering Design & Selection. 2005, JAN; 18(1): 11-24.
  1. 25.   Design and testing for a nontagged F1-V fusion protein as vaccine antigen against bubonic and pneumonic plague
  2. Powell, B. S.; Andrews, G. P.; Enama, J. T.; Jendrek, S.; Bolt, C.; Worsham, P.; Pullen, J. K.; Ribot, W.; Hines, H.; Smith, L.; Heath, D. G.; Adamovicz, J. J.
  3. Biotechnology Progress. 2005, SEP-OCT; 21(5): 1490-1510.
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