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  1. 1.   Allosteric modulation of NF1 GAP: Differential distributions of catalytically competent populations in loss-of-function and gain-of-function mutants
  2. Xu,Liang; Jang,Hyunbum; Nussinov,Ruth
  3. Protein Science : a publication of the Protein Society. 2025, Feb; 34(2): e70042.
  1. 2.   Developmental conversion of thymocyte-attracting cells into self-antigen-displaying cells in embryonic thymus medulla epithelium
  2. Ohigashi, Izumi; White, Andrea J; Yang, Mei-Ting; Fujimori, Sayumi; Tanaka, Yu; Jacques, Alison; Kiyonari, Hiroshi; Matsushita, Yosuke; Turan,Sevilay; Kelly, Michael C; Anderson, Graham; Takahama, Yousuke
  3. eLife. 2024, Mar 11; 12
  1. 3.   Spliceosome malfunction causes neurodevelopmental disorders with overlapping features
  2. Li, Dong; Wang, Qin; Bayat, Allan; Battig, Mark R; Zhou, Yijing; Bosch, Daniëlle Gm; van Haaften, Gijs; Granger, Leslie; Petersen, Andrea K; Pérez-Jurado, Luis A; Aznar-Laín, Gemma; Aneja, Anushree; Hancarova, Miroslava; Bendova, Sarka; Schwarz, Martin; Kremlíková Pourová, Radka; Sedlacek, Zdenek; Keena, Beth A; March, Michael E; Hou, Cuiping; O'Connor, Nora; Bhoj, Elizabeth J; Harr, Margaret H; Lemire, Gabrielle; Boycott, Kym M; Towne, Meghan C; Li, Megan; Tarnopolsky, Mark; Brady, Lauren; Parker, Michael J; Faghfoury, Hanna; Parsley, Lea Kristin; Agolini, Emanuele; Dentici, Maria Lisa; Novelli, Antonio; Wright, Meredith S; Palmquist, Rachel; Lai, Khanh; Scala, Marcello; Striano, Pasquale; Iacomino, Michele; Zara, Federico; Cooper, Annina; Maarup, Timothy J; Byler, Melissa; Lebel, Robert Roger; Balci, Tugce B; Louie, Raymond J; Lyons, Michael J; Douglas, Jessica; Nowak, Catherine B; Afenjar, Alexandra; Hoyer, Juliane; Keren, Boris; Maas, Saskia M; Motazacker, Mahdi M; Martinez-Agosto, Julian A; Rabani, Ahna M; McCormick, Elizabeth M; Falk, Marni; Ruggiero, Sarah M; Helbig, Ingo; Møller, Rikke S; Tessarollo,Lino; Tomassoni Ardori,Francesco; Palko,Mary Ellen; Hsieh, Tzung-Chien; Krawitz, Peter M; Ganapathi, Mythily; Gelb, Bruce D; Jobanputra, Vaidehi; Wilson, Ashley; Greally, John; Jacquemont, Sébastien; Jizi, Khadijé; Ange-Line, Bruel; Quelin, Chloé; Misra, Vinod K; Chick, Erika; Romano, Corrado; Greco, Donatella; Arena, Alessia; Morleo, Manuela; Nigro, Vincenzo; Seyama, Rie; Uchiyama, Yuri; Matsumoto, Naomichi; Taira, Ryoji; Tashiro, Katsuya; Sakai, Yasunari; Yigit, Gökhan; Wollnik, Bernd; Wagner, Michael; Kutsche, Barbara; Hurst, Anna Ce; Thompson, Michelle L; Schmidt, Ryan J; Randolph, Linda M; Spillmann, Rebecca C; Shashi, Vandana; Higginbotham, Edward J; Cordeiro, Dawn; Carnevale, Amanda; Costain, Gregory; Khan, Tayyaba; Funalot, Benoît; Tran Mau-Them, Frederic; Fernandez Garcia Moya, Luis; García-Miñaúr, Sixto; Osmond, Matthew; Chad, Lauren; Quercia, Nada; Carrasco, Diana; Li, Chumei; Sanchez-Valle, Amarilis; Kelley, Meghan; Nizon, Mathilde; Jensson, Brynjar O; Sulem, Patrick; Stefansson, Kari; Gorokhova, Svetlana; Busa, Tiffany; Rio, Marlène; Hadj Abdallah, Hamza; Lesieur-Sebellin, Marion; Amiel, Jeanne; Pingault, Véronique; Mercier, Sandra; Vincent, Marie; Philippe, Christophe; Fatus-Fauconnier, Clemence; Friend, Kathryn; Halligan, Rebecca K; Biswas, Sunita; Rosser, Jane Mr; Shoubridge, Cheryl; Corbett, Mark A; Barnett, Christopher; Gecz, Jozef; Leppig, Kathleen A; Slavotinek, Anne; Marcelis, Carlo; Pfundt, Rolph; de Vries, Bert Ba; van Slegtenhorst, Marjon A; Brooks, Alice S; Cogne, Benjamin; Rambaud, Thomas; Tümer, Zeynep; Zackai, Elaine H; Akizu, Naiara; Song, Yuanquan; Hakonarson, Hakon
  3. The Journal of clinical investigation. 2024, Jan 2; 134(1): e171235.
  1. 4.   Age-associated changes in lineage composition of the enteric nervous system regulate gut health and disease
  2. Kulkarni, Subhash; Saha, Monalee; Slosberg, Jared; Singh, Alpana; Nagaraj, Sushma; Becker, Laren; Zhang, Chengxiu; Bukowski, Alicia; Wang, Zhuolun; Liu, Guosheng; Leser, Jenna M; Kumar, Mithra; Bakhshi, Shriya; Anderson,Matthew; Lewandoski,Mark; Vincent, Elizabeth; Goff, Loyal A; Pasricha, Pankaj Jay
  3. eLife. 2023, Dec 18; 12
  1. 5.   Cancer and Autism: How PTEN Mutations Degrade Function at the Membrane and Isoform Expression in the Human Brain
  2. Jang,Hyunbum; Chen, Jiaye; Iakoucheva, Lilia M; Nussinov,Ruth
  3. Journal of Molecular Biology. 2023, Dec 15; 435(24): 168354.
  1. 6.   SHP2 clinical phenotype, cancer, or RASopathies, can be predicted by mutant conformational propensities
  2. Liu,Yonglan; Zhang,Wengang; Jang,Hyunbum; Nussinov,Ruth
  3. Cellular and Molecular Life Sciences : CMLS. 2023, Dec 12; 81(1): 5.
  1. 7.   Pleiotropic effects of BAFF on the senescence-associated secretome and growth arrest
  2. Rossi, Martina; Anerillas, Carlos; Idda, Maria Laura; Munk, Rachel; Shin, Chang Hoon; Donega, Stefano; Tsitsipatis, Dimitrios; Herman, Allison B; Martindale, Jennifer L; Yang, Xiaoling; Piao, Yulan; Mazan-Mamczarz, Krystyna; Fan, Jinshui; Ferrucci, Luigi; Johnson,Peter; De, Supriyo; Abdelmohsen, Kotb; Gorospe, Myriam
  3. eLife. 2023, Apr 21; 12
  1. 8.   Craniofacial Development Is Fine-Tuned by Sox2
  2. Mandalos, Nikolaos Panagiotis; Dimou, Aikaterini; Gavala, Maria Angeliki; Lambraki, Efstathia; Remboutsika, Eumorphia
  3. Genes. 2023, Jan 31; 14(2):
  1. 9.   Cardiac progenitors instruct second heart field fate through Wnts
  2. Miyamoto, Matthew; Kannan, Suraj; Anderson,Matthew; Liu, Xihe; Suh, David; Htet, Myo; Li, Biyi; Kakani, Tejasvi; Murphy, Sean; Tampakakis, Emmanouil; Lewandoski,Mark; Andersen, Peter; Uosaki, Hideki; Kwon, Chulan
  3. Proceedings of the National Academy of Sciences of the United States of America. 2023, Jan 24; 120(4): e2217687120.
  1. 10.   RASopathy mutations provide functional insight into the BRAF cysteine-rich domain and reveal the importance of autoinhibition in BRAF regulation
  2. Smith,Russell; Terrell,Elizabeth; Insinna, Christine; Agamasu, Constance; Wagner, Morgan E; Ritt,Daniel; Stauffer,Jimmy; Stephen,Andy; Morrison,Deborah
  3. Molecular Cell. 2022, Nov 17; 82(22): 4262-4276.
  1. 11.   Sonic hedgehog is not a limb morphogen but acts as a trigger to specify all digits in mice
  2. Zhu, Jianjian; Patel,Rashmi; Trofka, Anna; Harfe, Brian D; Mackem,Susan
  3. Developmental Cell. 2022, Aug 13; 57(17): 2048-2062.
  1. 12.   ADGRL1 haploinsufficiency causes a variable spectrum of neurodevelopmental disorders in humans and alters synaptic activity and behavior in a mouse model
  2. Vitobello, Antonio; Mazel, Benoit; Lelianova, Vera G; Zangrandi, Alice; Petitto, Evelina; Suckling, Jason; Salpietro, Vincenzo; Meyer, Robert; Elbracht, Miriam; Kurth, Ingo; Eggermann, Thomas; Benlaouer, Ouafa; Lall, Gurprit; Tonevitsky, Alexander G; Scott, Daryl A; Chan, Katie M; Rosenfeld, Jill A; Nambot, Sophie; Safraou, Hana; Bruel, Ange-Line; Denommé-Pichon, Anne-Sophie; Tran Mau-Them, Frédéric; Philippe, Christophe; Duffourd, Yannis; Guo, Hui; Petersen, Andrea K; Granger, Leslie; Crunk, Amy; Bayat, Allan; Striano, Pasquale; Zara, Federico; Scala, Marcello; Thomas, Quentin; Delahaye, Andrée; de Sainte Agathe, Jean-Madeleine; Buratti, Julien; Kozlov,Serguei; Faivre, Laurence; Thauvin-Robinet, Christel; Ushkaryov, Yuri
  3. American Journal of Human Genetics. 2022, Jul 29; 109(8): 1436-1457..
  1. 13.   BETA: a comprehensive benchmark for computational drug-target prediction
  2. Zong, Nansu; Li,Ning; Wen, Andrew; Ngo, Victoria; Yu, Yue; Huang, Ming; Chowdhury, Shaika; Jiang, Chao; Fu, Sunyang; Weinshilboum, Richard; Jiang, Guoqian; Hunter, Lawrence; Liu, Hongfang
  3. Briefings in Bioinformatics. 2022, Jun 02;
  1. 14.   Genetic basis for an evolutionary shift from ancestral preaxial to postaxial limb polarity in non-urodele vertebrates
  2. Trofka, Anna; Huang,Bau-Lin; Zhu,Jianjian; Heinz,Will; Magidson,Valentin; Shibata, Yuki; Shi, Yun-Bo; Tarchini, Basile; Stadler, H Scott; Kabangu, Mirindi; Al Haj Baddar, Nour W; Voss, S Randal; Mackem,Susan
  3. Current biology : CB. 2021, Nov 22; 31(22): 4923-4934.e5.
  1. 15.   Rethinking positional information and digit identity: The role of late interdigit signaling
  2. Huang,Bau-Lin; Mackem,Susan
  3. Developmental Dynamics. 2021, Nov 22;
  1. 16.   Bacteriophage Lambda RexA and RexB Functions Assist the Transition from Lysogeny to Lytic Growth
  2. Thomason,Lynn; Schiltz, Carl J; Court, Carolyn; Hosford, Christopher J; Adams, Myfanwy C; Chappie, Joshua S; Court,Don
  3. Molecular microbiology. 2021, Aug 11;
  1. 17.   Rare Germline Variants in Chordoma-Related Genes and Chordoma Susceptibility
  2. Yepes, Sally; Shah, Nirav N.; Bai, Jiwei; Koka, Hela; Li, Chuzhong; Gui, Songbai; McMaster, Mary Lou; Xiao, Yanzi; Jones,Kristine; Wang,Mingyi; Vogt,Aurelie; Zhu, Bin; Zhu,Bin; Hutchinson,Amy; Yeager,Meredith; Hicks,Belynda; Carter, Brian; Freedman, Neal D.; Beane-Freeman, Laura; Chanock, Stephen J.; Zhang, Yazhuo; Parry, Dilys M.; Yang, Xiaohong R.; Goldstein, Alisa M.
  3. Cancers. 2021, Jun; 13(11):
  1. 18.   An Integrated Epigenomic and Transcriptomic Map of Mouse and Human aß T Cell Development
  2. Chopp, Laura B; Gopalan, Vishaka; Ciucci, Thomas; Ruchinskas,Allison; Rae, Zachary; Lagarde, Manon; Gao, Yayi; Li, Caiyi; Bosticardo, Marita; Pala, Francesca; Livak, Ferenc; Kelly,Michael; Hannenhalli, Sridhar; Bosselut, Rémy
  3. Immunity. 2020, Dec 15; 53(6): 1182-1201.e8.
  1. 19.   Gbx2 Is Required for the Migration and Survival of a Subpopulation of Trigeminal Cranial Neural Crest Cells
  2. Roeseler, David A; Strader, Lona; Anderson,Matthew; Waters, Samuel T
  3. Journal of developmental biology. 2020, Dec 11; 8(4): pii: E33.
  1. 20.   Fgf4 maintains Hes7 levels critical for normal somite segmentation clock function
  2. Anderson,Matthew; Magidson,Valentin; Kageyama, Ryoichiro; Lewandoski,Mark
  3. eLife. 2020, Nov 19; 9: pii: 9:e55608.
  1. 21.   LC-MS-sMRM method development and validation of different classes of pain panel drugs and analysis of clinical urine samples
  2. Masood, M Athar; Veenstra, Timothy D
  3. Basic & clinical pharmacology & toxicology. 2020, Nov 01;
  1. 22.   Accelerating Therapeutics for Opportunities in Medicine: A Paradigm Shift in Drug Discovery
  2. Hinkson, Izumi V; Madej,Benjamin; Stahlberg,Eric
  3. Frontiers in pharmacology. 2020, Jun 30; 11: 770.
  1. 23.   Gbx1 and Gbx2 Are Essential for Normal Patterning and Development of Interneurons and Motor Neurons in the Embryonic Spinal Cord
  2. Buckley, Desirè M; Burroughs-Garcia, Jessica; Kriks, Sonja; Lewandoski,Mark; Waters, Samuel T
  3. Journal of developmental biology. 2020, JUN; 8(2): pii: jdb8020009.
  1. 24.   EphA7 is required for otic epithelial homeostasis by modulating Claudin6 in Xenopus
  2. Wang, Xiaolei; Sun,Jian; Wang, Zhaobao; Li, Chaocui; Mao, Bingyu
  3. Biochemical and biophysical research communications. 2020, May 28; 526(2): 375-380.
  1. 25.   A Shared Regulatory Element Controls the Initiation of Tcf7 Expression During Early T Cell and Innate Lymphoid Cell Developments
  2. Harly, Christelle; Kenney, Devin; Wang, Yueqiang; Ding, Yi; Zhao, Yongge; Awasthi,Roackie; Bhandoola, Avinash
  3. Frontiers in immunology. 2020, MAR 20; 11: 470.
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