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  1. 1.   Allosteric modulation of NF1 GAP: Differential distributions of catalytically competent populations in loss-of-function and gain-of-function mutants
  2. Xu,Liang; Jang,Hyunbum; Nussinov,Ruth
  3. Protein Science : a publication of the Protein Society. 2025, Feb; 34(2): e70042.
  1. 2.   Developmental conversion of thymocyte-attracting cells into self-antigen-displaying cells in embryonic thymus medulla epithelium
  2. Ohigashi, Izumi; White, Andrea J; Yang, Mei-Ting; Fujimori, Sayumi; Tanaka, Yu; Jacques, Alison; Kiyonari, Hiroshi; Matsushita, Yosuke; Turan,Sevilay; Kelly, Michael C; Anderson, Graham; Takahama, Yousuke
  3. eLife. 2024, Mar 11; 12
  1. 3.   Age-associated changes in lineage composition of the enteric nervous system regulate gut health and disease
  2. Kulkarni, Subhash; Saha, Monalee; Slosberg, Jared; Singh, Alpana; Nagaraj, Sushma; Becker, Laren; Zhang, Chengxiu; Bukowski, Alicia; Wang, Zhuolun; Liu, Guosheng; Leser, Jenna M; Kumar, Mithra; Bakhshi, Shriya; Anderson,Matthew; Lewandoski,Mark; Vincent, Elizabeth; Goff, Loyal A; Pasricha, Pankaj Jay
  3. eLife. 2023, Dec 18; 12
  1. 4.   Cancer and Autism: How PTEN Mutations Degrade Function at the Membrane and Isoform Expression in the Human Brain
  2. Jang,Hyunbum; Chen, Jiaye; Iakoucheva, Lilia M; Nussinov,Ruth
  3. Journal of Molecular Biology. 2023, Dec 15; 435(24): 168354.
  1. 5.   SHP2 clinical phenotype, cancer, or RASopathies, can be predicted by mutant conformational propensities
  2. Liu,Yonglan; Zhang,Wengang; Jang,Hyunbum; Nussinov,Ruth
  3. Cellular and Molecular Life Sciences : CMLS. 2023, Dec 12; 81(1): 5.
  1. 6.   Pleiotropic effects of BAFF on the senescence-associated secretome and growth arrest
  2. Rossi, Martina; Anerillas, Carlos; Idda, Maria Laura; Munk, Rachel; Shin, Chang Hoon; Donega, Stefano; Tsitsipatis, Dimitrios; Herman, Allison B; Martindale, Jennifer L; Yang, Xiaoling; Piao, Yulan; Mazan-Mamczarz, Krystyna; Fan, Jinshui; Ferrucci, Luigi; Johnson,Peter; De, Supriyo; Abdelmohsen, Kotb; Gorospe, Myriam
  3. eLife. 2023, Apr 21; 12
  1. 7.   ADGRL1 haploinsufficiency causes a variable spectrum of neurodevelopmental disorders in humans and alters synaptic activity and behavior in a mouse model
  2. Vitobello, Antonio; Mazel, Benoit; Lelianova, Vera G; Zangrandi, Alice; Petitto, Evelina; Suckling, Jason; Salpietro, Vincenzo; Meyer, Robert; Elbracht, Miriam; Kurth, Ingo; Eggermann, Thomas; Benlaouer, Ouafa; Lall, Gurprit; Tonevitsky, Alexander G; Scott, Daryl A; Chan, Katie M; Rosenfeld, Jill A; Nambot, Sophie; Safraou, Hana; Bruel, Ange-Line; Denommé-Pichon, Anne-Sophie; Tran Mau-Them, Frédéric; Philippe, Christophe; Duffourd, Yannis; Guo, Hui; Petersen, Andrea K; Granger, Leslie; Crunk, Amy; Bayat, Allan; Striano, Pasquale; Zara, Federico; Scala, Marcello; Thomas, Quentin; Delahaye, Andrée; de Sainte Agathe, Jean-Madeleine; Buratti, Julien; Kozlov,Serguei; Faivre, Laurence; Thauvin-Robinet, Christel; Ushkaryov, Yuri
  3. American Journal of Human Genetics. 2022, Jul 29; 109(8): 1436-1457..
  1. 8.   Fgf4 maintains Hes7 levels critical for normal somite segmentation clock function
  2. Anderson,Matthew; Magidson,Valentin; Kageyama, Ryoichiro; Lewandoski,Mark
  3. eLife. 2020, Nov 19; 9: pii: 9:e55608.
  1. 9.   Split hand/foot malformation genetics supports the chromosome 7 copy segregation mechanism for human limb development
  2. Klar, A. J.
  3. Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 2016, 19-Dec; 371(1710):
  1. 10.   Introduction to provocative questions in left-right asymmetry
  2. Levin, M.; Klar, A. J.; Ramsdell, A. F.
  3. Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 2016, 19-Dec; 371(1710):
  1. 11.   Segmentation and quantitative analysis of individual cells in developmental tissues
  2. Nandy, K.; Kim, J.; McCullough, D. P.; McAuliffe, M.; Meaburn, K. J.; Yamaguchi, T. P.; Gudla, P. R.; Lockett, S. J.
  3. Methods in molecular biology (Clifton, N.J.). 2014 1092: 235-53.
  1. 12.   Real-time PCR-based assay to quantify the relative amount of human and mouse tissue present in tumor xenografts
  2. Alcoser, S. Y.; Kimmel, D. J.; Borgel, S. D.; Carter, J. P.; Dougherty, K. M.; Hollingshead, M. G.
  3. BMC Biotechnology. 2011, Dec; 11
  1. 13.   Lymphoid-Specific Helicase (HELLS) Is Essential for Meiotic Progression in Mouse Spermatocytes
  2. Zeng, W. X.; Baumann, C.; Schmidtmann, A.; Honaramooz, A.; Tang, L.; Bondareva, A.; Dores, C.; Fan, T.; Xi, S. C.; Geiman, T.; Rathi, R.; de Rooij, D.; De La Fuente, R.; Muegge, K.; Dobrinski, I.
  3. Biology of Reproduction. 2011, Jun; 84(6): 1235-1241.
  1. 14.   Regulation of Mouse Small Heat Shock Protein alpha b-Crystallin Gene by Aryl Hydrocarbon Receptor
  2. Liu, S. A. L. S. A.; Piatigorsky, J.
  3. Plos One. 2011, Apr; 6(4): 11.
  1. 15.   Maternal diet and aging alter the epigenetic control of a promoter-enhancer interaction at the Hnf4a gene in rat pancreatic islets
  2. Sandovici, I.; Smith, N. H.; Nitert, M. D.; Ackers-Johnson, M.; Uribe-Lewis, S.; Ito, Y.; Jones, R. H.; Marquez, V. E.; Cairns, W.; Tadayyon, M.; O'Neill, L. P.; Murrell, A.; Ling, C.; Constancia, M.; Ozanne, S. E.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2011, Mar; 108(13): 5449-5454.
  1. 16.   Neuralized1 causes apoptosis and downregulates Notch target genes in medulloblastoma
  2. Teider, N.; Scott, D. K.; Neiss, A.; Weeraratne, S. D.; Amani, V. M.; Wang, Y. F.; Marquez, V. E.; Cho, Y. J.; Pomeroy, S. L.
  3. Neuro-Oncology. 2010, Dec; 12(12): 1244-+.
  1. 17.   TNF/p38 alpha/Polycomb Signaling to Pax7 Locus in Satellite Cells Links Inflammation to the Epigenetic Control of Muscle Regeneration
  2. Palacios, D.; Mozzetta, C.; Consalvi, S.; Caretti, G.; Saccone, V.; Proserpio, V.; Marquez, V. E.; Valente, S.; Mai, A.; Forcales, S. V.; Sartorelli, V.; Puri, P. L.
  3. Cell Stem Cell. 2010, Oct; 7(4): 455-469.
  1. 18.   Epigenetic Analysis of KSHV Latent and Lytic Genomes
  2. Toth, Z.; Maglinte, D. T.; Lee, S. H.; Lee, H. R.; Wong, L. Y.; Brulois, K. F.; Lee, S.; Buckley, J. D.; Laird, P. W.; Marquez, V. E.; Jung, J. U.
  3. Plos Pathogens. 2010, Jul; 6(7): 17.
  1. 19.   Nodal Signaling Recruits the Histone Demethylase Jmjd3 to Counteract Polycomb-Mediated Repression at Target Genes
  2. Dahle, O.; Kumar, A.; Kuehn, M. R.
  3. Science Signaling. 2010, Jun; 3(127): 8.
  1. 20.   A proposal for re-defining the way the aetiology of schizophrenia and bipolar human psychiatric diseases is investigated
  2. Klar, A. J. S.
  3. Journal of Biosciences. 2010, Mar; 35(1): 11-15.
  1. 21.   Wnt3a/beta-catenin signaling controls posterior body development by coordinating mesoderm formation and segmentation
  2. Dunty, W. C.; Biris, K. K.; Chalamalasetty, R. B.; Taketo, M. M.; Lewandoski, M.; Yamaguchi, T. P.
  3. Development. 2008 135(1): 85-94.
  1. 22.   Global transcription in pluripotent embryonic stem cells
  2. Efroni, S.; Duttagupta, R.; Cheng, J.; Dehghani, H.; Hoeppner, D. J.; Dash, C.; Bazett-Jones, D. P.; Le Grice, S.; Mckay, R.; Buetow, K. H.; Gingeras, T. R.; Misteli, T.; Meshorer, E.
  3. Cell Stem Cell. 2008 2(5): 437-447.
  1. 23.   Wnt2a/2b are required for lung specification and development through activation of canonical signaling
  2. Goss, A. M.; Tian, Y.; Wang, Z. S.; Yamaguchi, T.; Morrisey, E.
  3. Developmental Biology. 2008 319(2): 606-606.
  1. 24.   Support for the selective chromatid segregation hypothesis advanced for the mechanism of left-right body axis development in mice
  2. Klar, A. J.
  3. Breast Disease. 2008 29: 47-56.
  1. 25.   The identity and fate of Tbx4-expressing cells reveal previously unknown developmental decisions in the allantois, limb, and proctodeum
  2. Naiche, L. A.; Ripla, A.; Papaioannou, V. E.
  3. Developmental Biology. 2008 319(2): 596-596.
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