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  1. 1.   Tissue-Specific DNA Methylation Changes in CD8+ T Cells During Chronic Simian Immunodeficiency Virus Infection of Infant Rhesus Macaques
  2. Nag,Mukta; Fogle, Jonathan E; Pillay, Santhoshan; Del Prete,Greg; De Paris, Kristina
  3. Viruses. 2024, Nov 27; 16(12):
  1. 2.   African ancestry-derived APOL1 risk genotypes show proximal epigenetic associations
  2. Breeze, Charles E; Lin, Bridget M; Winkler,Cheryl; Franceschini, Nora
  3. BMC Genomics. 2024, May 08; 25(1): 452.
  1. 3.   Specialized replication of heterochromatin domains ensures self-templated chromatin assembly and epigenetic inheritance
  2. Nathanailidou, Patroula; Dhakshnamoorthy, Jothy; Xiao, Hua; Zofall, Martin; Holla, Sahana; O'Neill,Maura; Andresson,Thorkell; Wheeler, David; Grewal, Shiv I S
  3. Proceedings of the National Academy of Sciences of the United States of America. 2024, Feb 06; 121(6): e2315596121.
  1. 4.   Long-term survivors of glioblastoma: Tumor molecular, clinical, and imaging findings
  2. Briceno, Nicole; Vera, Elizabeth; Komlodi-Pasztor, Edina; Abdullaev, Zied; Choi, Anna; Grajkowska, Ewa; Kunst, Tricia; Levine, Jason; Lindsley, Matthew; Fernandez, Kelly; Reyes, Jennifer; Boris,Lisa; Burton, Eric; Panzer, Marissa; Polskin, Lily; Penas-Prado, Marta; Pillai, Tina; Theeler, Brett J; Wu, Jing; Wall, Kathleen; Papanicolau-Sengos, Antonios; Quezado, Martha; Smirniotopoulos, James; Aldape, Kenneth; Armstrong, Terri S; Gilbert, Mark R
  3. Neuro-Oncology Advances. 2024, Jan-Dec; 6(1): vdae019.
  1. 5.   In utero exposure to diethylstilbestrol and blood DNA methylation in adult women: Results from a meta-analysis of two cohort studies
  2. Bodelon, Clara; Gierach, Gretchen L; Hatch, Elizabeth E; Riseberg, Emily; Hutchinson,Amy; Yeager,Meredith; Sandler, Dale P; Taylor, Jack A; Hoover, Robert N; Xu, Zongli; Titus, Linda; Palmer, Julie R; Troisi, Rebecca
  3. Environmental Research. 2023, Aug 15; 231(Pt. 1): 115990.
  1. 6.   DNA methylation age in paired tumor and adjacent normal breast tissue in Chinese women with breast cancer
  2. Koka, Hela; Bodelon, Clara; Horvath, Steve; Lee, Priscilla Ming Yi; Wang,Difei; Song,Lei; Zhang, Tongwu; Hurson, Amber N; Guida, Jennifer Lyn; Zhu, Bin; Bailey-Whyte, Maeve; Wang, Feng; Wu, Cherry; Tsang, Koon Ho; Tsoi, Yee-Kei; Chan, W C; Law, Sze Hong; Hung, Ray Ka Wai; Tse, Gary M; Yuen, Karen Ka-Wan; Karlins, Eric; Jones,Kristine; Vogt,Aurelie; Zhu, Bin; Hutchinson,Amy; Hicks,Belynda; Garcia-Closas, Montserrat; Chanock, Stephen; Barnholtz-Sloan, Jill; Tse, Lap Ah; Yang, Xiaohong R
  3. Clinical Epigenetics. 2023, Mar 30; 15(1): 55.
  1. 7.   The regulatory mechanisms of proline and hydroxyproline metabolism: Recent advances in perspective
  2. Phang,James
  3. Frontiers in Oncology. 2023, Jan 26; 12: 1118675.
  1. 8.   Structural basis for cell type specific DNA binding of C/EBPß: the case of cell cycle inhibitor p15INK4b promoter
  2. Lountos, George T; Cherry, Scott; Tropea, Joseph E; Wlodawer, Alexander; Miller, Maria
  3. Journal of Structural Biology. 2022, Nov 04; 214(4): 107918.
  1. 9.   Telomere length and epigenetic clocks as markers of cellular aging: a comparative study
  2. Pearce, Emily E; Alsaggaf, Rotana; Katta,Shilpa; Dagnall,Casey; Aubert, Geraldine; Hicks,Belynda; Spellman, Stephen R; Savage, Sharon A; Horvath, Steve; Gadalla, Shahinaz M
  3. GeroScience. 2022, May 18;
  1. 10.   CpG Site-Specific Methylation-Modulated Divergent Expression of PRSS3 Transcript Variants Facilitates Nongenetic Intratumor Heterogeneity in Human Hepatocellular Carcinoma
  2. Lin, Shuye; Xu, Hanli; Pang, Mengdi; Zhou, Xiaomeng; Pan, Yuanming; Zhang, Lishu; Guan, Xin; Wang, Xiaoyue; Lin, Bonan; Tian, Rongmeng; Chen,Keqiang; Zhang, Xiaochen; Yang, Zijiang; Ji, Fengmin; Huang, Yingying; Wei, Wu; Gong,Wang; Ren, Jianke; Wang,Jiming; Guo, Mingzhou; Huang, Jiaqiang
  3. Frontiers in Oncology. 2022, Apr 11; 12: 831268.
  1. 11.   Phylogenomic Analysis of Human Papillomavirus Type 31 and Cervical Carcinogenesis: A Study of 2093 Viral Genomes
  2. Pinheiro, Maisa; Harari, Ariana; Schiffman, Mark; Clifford, Gary M; Chen, Zigui; Yeager, Meredith; Cullen,Michael; Boland, Joseph F; Raine-Bennett, Tina; Steinberg, Mia; Bass, Sara; Xiao, Yanzi; Tenet, Vanessa; Yu, Kai; Zhu, Bin; Burdett,Laurie; Turan, Sevilay; Lorey, Thomas; Castle, Philip E; Wentzensen, Nicolas; Burk, Robert D; Mirabello, Lisa
  3. Viruses. 2021, Sep 28; 13(10):
  1. 12.   Arrow pushing in RNA modification sequencing
  2. Bartee,David; Thalalla Gamage,Supuni; Link,Courtney; Meier,Jordan
  3. Chemical Society reviews. 2021, Jul 14;
  1. 13.   The epigenetic regulator LSH maintains fork protection and genomic stability via MacroH2A deposition and RAD51 filament formation
  2. Xu,Xiaoping; Ni, Kai; He,Yafeng; Ren, Jianke; Sun, Chongkui; Liu, Yie; Aladjem, Mirit; Burkett, Sandra; Finney, Richard; Ding, Xia; Sharan,Shyam; Muegge,Kathrin
  3. Nature communications. 2021, Jun 10; 12(1):
  1. 14.   Epigenetic Regulation of BST-2 Expression Levels and the Effect on HIV-1 Pathogenesis
  2. Singh, Ravesh; Ramsuran, Veron; Naranbhai, Vivek; Yende-Zuma, Nonhlanhla; Garrett, Nigel; Mlisana, Koleka; Dong, Krista L; Walker, Bruce D; Abdool Karim, Salim S; Carrington, Mary; Ndung'u, Thumbi
  3. Frontiers In Immunology. 2021, May 5; 12: 669241.
  1. 15.   Differential MUC22 expression by epigenetic alterations in human lung squamous cell carcinoma and adenocarcinoma
  2. Lin, Shuye; Tian, Cuimeng; Li, Jianhui; Liu, Bin; Ma, Teng; Chen,Keqiang; Gong,Wang; Wang,Jiming; Huang, Jiaqiang
  3. Oncology Reports. 2021, May; 45(5):
  1. 16.   CpG Methylation Profiles of HIV-1 Proviral DNA in Individuals on ART
  2. Boltz,Valerie; Ceriani, Cristina; Rausch,Jason; Shao,Wei; Bale, Michael J.; Keele,Brandon; Hoh, Rebecca; Milush, Jeffrey M.; Deeks, Steve G.; Maldarelli,Frank; Kearney,Mary; Coffin, John M.
  3. VIRUSES-BASEL. 2021, May; 13(5):
  1. 17.   Multigenerational Epigenetic Regulation of Allergic Diseases: Utilizing an Experimental Dust Mite-Induced Asthma Model
  2. Pulczinski, Jairus C; Shang, Yan; Dao, Tyna; Limjunyawong, Nathachit; Sun, Qinying; Mitzner, Wayne; Cheng, Robert Ys; Tang, Wan-Yee
  3. Frontiers in Genetics. 2021, Apr 1; 12: 624561.
  1. 18.   Molecular Features of Cancers Exhibiting Exceptional Responses to Treatment
  2. Wheeler, David A; Takebe, Naoko; Hinoue, Toshinori; Hoadley, Katherine A; Cardenas, Maria F; Hamilton, Alina M; Laird, Peter W; Wang, Linghua; Johnson, Adrienne; Dewal, Ninad; Miller, Vincent; Piñeyro, David; Castro de Moura, Manuel; Esteller, Manel; Shen, Hui; Zenklusen, Jean Claude; Tarnuzzer, Roy; McShane, Lisa M; Tricoli, James V; Williams, Paul M; Lubensky, Irina; O'Sullivan-Coyne, Geraldine; Kohn, Elise C; Little, Richard F; White, Jeffrey; Malik, Shakun; Harris, Lyndsay; Weil, Carol; Chen, Alice P; Karlovich,Chris; Rodgers, Brian; Shankar, Lalitha; Jacobs, Paula; Nolan, Tracy; Hu, Jianhong; Muzny, Donna M; Doddapaneni, Harshavardhan; Korchina, Viktoriya; Gastier-Foster, Julie; Bowen, Jay; Leraas, Kristen; Edmondson,Elijah; Doroshow, James H; Conley, Barbara A; Ivy, S Percy; Staudt, Louis M
  3. Cancer Cell. 2021, Jan 11; 39(1): 38-53.e7.
  1. 19.   Combination Methionine-methylation-axis Blockade: A Novel Approach to Target the Methionine Addiction of Cancer
  2. Higuchi, Takashi; Han, Qinghong; Sugisawa, Norihiko; Yamamoto, Jun; Yamamoto, Norio; Hayashi, Katsuhiro; Kimura, Hiroaki; Miwa, Shinji; Igarashi, Kentaro; Bouvet, Michael; Singh, Ram; Tsuchiya, Hiroyuki; Hoffman, Robert M.
  3. Cancer Genomics Proteomics. 2021, Mar-Apr; 18(2): 113-120.
  1. 20.   Pogz deficiency leads to transcription dysregulation and impaired cerebellar activity underlying autism-like behavior in mice
  2. Suliman-Lavie, Reut; Title, Ben; Cohen, Yahel; Hamada, Nanako; Tal, Maayan; Tal, Nitzan; Monderer-Rothkoff, Galya; Gudmundsdottir, Bjorg; Gudmundsson,Kristbjorn; Keller,Jonathan; Huang, Guo-Jen; Nagata, Koh-Ichi; Yarom, Yosef; Shifman, Sagiv
  3. Nature communications. 2020, NOV 17; 11(1): 5836.
  1. 21.   LSH mediates gene repression through macroH2A deposition
  2. Ni,Kai; Ren, Jianke; Xu,Xiaoping; He,Yafeng; Finney, Richard; Braun, Simon M. G.; Hathaway, Nathaniel A.; Crabtree, Gerald R.; Muegge,Kathrin
  3. NATURE COMMUNICATIONS. 2020, NOV 6; 11(1):
  1. 22.   Age-related DNA methylation in paired normal and tumour breast tissue in Chinese breast cancer patients
  2. Kiely, Maeve; Tse, Lap Ah; Koka, Hela; Wang,Difei; Lee, Priscilla; Wang, Feng; Wu, Cherry; Tsang, Koon Ho; Chan, Wing-Cheong; Law, Sze Hong; Zhang, Han; Karlins,Eric; Zhu,Bin; Hutchinson,Amy; Hicks,Belynda; Zhu, Bin; Yang, Xiaohong R
  3. Epigenetics. 2020, SEP 26; 1-15.
  1. 23.   Degradation of 5hmC-marked stalled replication forks by APE1 causes genomic instability
  2. Kharat,Suhas; Ding, Xia; Swaminathan, Divya; Suresh, Akshey; Singh, Manish; Sengodan,Satheesh; Burkett,Sandra; Marks, Hanna; Pamala, Chinmayi; He,Yafeng; Fox,Stephen; Buehler, Eugen C; Muegge,Kathrin; Martin, Scott E; Sharan,Shyam
  3. Science signaling. 2020, Aug 18; 13(645): pii: eaba8091.
  1. 24.   Genetic and Epigenetic Regulation of the Smoothened Gene (SMO) in Cancer Cells
  2. Lou,Hong; Li,Hongchuan; Huehn, Andrew R; Tarasova,Nadya; Saleh, Bahara; Anderson, Stephen K; Dean,Michael
  3. Cancers. 2020, Aug 08; 12(8): pii: E2219.
  1. 25.   Analysis of Ugandan cervical carcinomas identifies human papillomavirus clade-specific epigenome and transcriptome landscapes
  2. Gagliardi, Alessia; Porter, Vanessa L; Zong, Zusheng; Bowlby, Reanne; Titmuss, Emma; Namirembe, Constance; Griner, Nicholas B; Petrello, Hilary; Bowen, Jay; Chan, Simon K; Culibrk, Luka; Darragh, Teresa M; Stoler, Mark H; Wright, Thomas C; Gesuwan, Patee; Dyer,Maureen; Ma, Yussanne; Mungall, Karen L; Jones, Steven J M; Nakisige, Carolyn; Novik, Karen; Orem, Jackson; Origa, Martin; Gastier-Foster, Julie M; Yarchoan, Robert; Casper, Corey; Mills, Gordon B; Rader, Janet S; Ojesina, Akinyemi I; Gerhard, Daniela S; Mungall, Andrew J; Marra, Marco A
  3. Nature genetics. 2020, Aug; 52(8): 800-810.
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