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  1. 1.   Olaparib in treatment-refractory isocitrate dehydrogenase 1 (IDH1)- and IDH2-mutant cholangiocarcinoma: Safety and antitumor activity from the phase 2 National Cancer Institute 10129 trial
  2. Cecchini, Michael; Pilat, Mary Jo; Uboha, Nataliya; Azad, Nilofer S; Cho, May; Davis, Elizabeth J; Ahnert, Jordi Rodon; Tinoco, Gabriel; Shapiro, Geoffrey I; Khagi, Simon; Powers, Benjamin; Spencer, Kristen; Groisberg, Roman; Drappatz, Jan; Chen, Li; Das,Bishu; Bao, Xun; Li, Jing; Narayan, Azeet; Vu, Dennis; Patel, Abhijit; Niger, Monica; Doroshow, Deborah; Durecki, Diane; Boerner, Scott A; Bindra, Ranjit; Ivy, Percy; Shyr, Derek; Shyr, Yu; LoRusso, Patricia M
  3. Cancer. 2025, Feb 15; 131(4): e35755.
  1. 2.   Allosteric modulation of NF1 GAP: Differential distributions of catalytically competent populations in loss-of-function and gain-of-function mutants
  2. Xu,Liang; Jang,Hyunbum; Nussinov,Ruth
  3. Protein Science : a publication of the Protein Society. 2025, Feb; 34(2): e70042.
  1. 3.   Comparative Analyses of Antiviral Potencies of Second-Generation Integrase Strand Transfer Inhibitors (INSTIs) and the Developmental Compound 4d Against a Panel of Integrase Quadruple Mutants
  2. Smith,Steven; Zhao,Xuezhi; Hughes,Stephen; Burke,Terrence
  3. Viruses. 2025, Jan 16; 17(1):
  1. 4.   A patient-derived cell model for malignant transformation in IDH-mutant glioma
  2. Kim, Olga; Sergi, Zach; Yu, Guangyang; Yamamoto, Kazutoshi; Quezado, Martha; Abdullaev, Zied; Crooks, Danel R; Kishimoto, Shun; Li, Qi; Lu, Peng; Blackman, Burchelle; Andresson,Thorkell; Wu,Xiaolin; Tran,Bao; Wei, Jun S; Zhang, Wei; Zhang, Meili; Song, Hua; Khan, Javed; Krishna, Murali C; Brender, Jeffrey R; Wu, Jing
  3. Acta Neuropathologica Communications. 2024, Sep 10; 12(1): 148.
  1. 5.   Phase II study of vemurafenib in children and young adults with tumors harboring BRAF V600 mutations: NCI-COG pediatric MATCH trial (APEC1621) Arm G
  2. Nelson, Marie V; Kim, AeRang; Williams,Mickey; Roy-Chowdhuri, Sinchita; Patton, David R; Coffey, Brent D; Reid, Joel M; Piao, Jin; Saguilig, Lauren; Alonzo, Todd A; Berg, Stacey L; Ramirez, Nilsa C; Jaju, Alok; Fox, Elizabeth; Weigel, Brenda J; Hawkins, Douglas S; Mooney, Margaret M; Takebe, Naoko; Tricoli, James V; Janeway, Katherine A; Seibel, Nita L; Parsons, D Williams
  3. The Oncologist. 2024, Jun 14;
  1. 6.   Cancer and Autism: How PTEN Mutations Degrade Function at the Membrane and Isoform Expression in the Human Brain
  2. Jang,Hyunbum; Chen, Jiaye; Iakoucheva, Lilia M; Nussinov,Ruth
  3. Journal of Molecular Biology. 2023, Dec 15; 435(24): 168354.
  1. 7.   Potent dual block to HIV-1 infection using lentiviral vectors expressing fusion inhibitor peptide mC46- and Vif-resistant APOBEC3G
  2. Frankenberry,Krista; Ojha, Chet R; Hermann, Kip J; Hu,Wei-Shau; Torbett, Bruce E; Pathak,Vinay
  3. Molecular Therapy. Nucleic Acids. 2023, Sep 12; 33: 794-809.
  1. 8.   Chronic Exposure to Nitric Oxide Induces P53 Mutations and Malignant-like Features in Human Breast Epithelial Cells
  2. Cheng,Robert; Burkett,Sandra; Ambs, Stefan; Moody, Terry; Wink,David; Ridnour,Lisa
  3. Biomolecules. 2023, Feb 07; 13(2):
  1. 9.   An in vitro and computational validation of a novel loss-of-functional mutation in PAX9 associated with non-syndromic tooth agenesis
  2. Sarkar,Tanmoy; Ranjan, Prashant; Kanathur, Smitha; Gupta, Ankush; Das, Parimal
  3. Molecular Genetics and Genomics : MGG. 2022, Nov 14;
  1. 10.   The E. coli L-asparaginase V27T mutant: structural and functional characterization and comparison with theoretical predictions
  2. Strzelczyk, Pawel; Zhang,Di; Wlodawer,Alexander; Lubkowski,Jacek
  3. FEBS Letters. 2022, Oct 30; 596(23): 3060-3068.
  1. 11.   A Knock-in Mouse Model of Thymoma with the GTF2I L424H Mutation
  2. He, Yongfeng; Kim, In-Kyu; Bian, Jing; Polyzos, Alexander; Di Giammartino, Dafne Campigli; Zhang, Yuwen; Luo, Ji; Hernandez, Maria O; Kedei, Noemi; Cam, Maggie; Borczuk, Alain C; Lee, Trevor; Han, Yumin; Conner, Elizabeth A; Wong, Madeline M F; Tillo, Desiree C; Umemura, Shigeki; Chen, Vincent; Ruan, Lydia; White, Jessica B; Miranda, Ileana C; Awasthi,Roackie; Altorki, Nasser K; Divakar, Prajan; Elemento, Olivier; Apostolou, Effie; Giaccone, Giuseppe
  3. Journal of Thoracic Oncology : official publication of the International Association for the Study of Lung Cancer. 2022, Aug 29; 17(12): 1375-1386.
  1. 12.   Conformational Dynamics Allows Sampling of an "Active-like" State by Oncogenic K-Ras-GDP
  2. Grudzien, Patrick; Jang,Hyunbum; Leschinsky, Nicholas; Nussinov,Ruth; Gaponenko, Vadim
  3. Journal of Molecular Biology. 2022, Jun 22; 167695.
  1. 13.   Enhanced Transmissibility and Decreased Virulence of HIV-1 CRF07_BC May Explain Its Rapid Expansion in China
  2. Cheng, Zetao; Yan, Huanchang; Li, Qingmei; Ablan,Sherimay; Kleinpeter,Alex; Freed,Eric; Wu, Hao; Dzakah, Emmanuel Enoch; Zhao, Jianhui; Han, Zhigang; Wang, Haiying; Tang, Shixing
  3. Microbiology Spectrum. 2022, Jun 21; e0014622.
  1. 14.   The structural basis of BCR-ABL recruitment of GRB2 in chronic myelogenous leukemia
  2. Liu,Yonglan; Jang,Hyunbum; Zhang,Mingzhen; Tsai,Chung-Jung; Maloney,Ryan; Nussinov,Ruth
  3. Biophysical Journal. 2022, May 31;
  1. 15.   Comparison of somatic mutation landscapes in Chinese versus European breast cancer patients
  2. Zhu, Bin; Joo, Lijin; Zhang, Tongwu; Koka, Hela; Lee, DongHyuk; Shi, Jianxin; Lee, Priscilla; Wang, Difei; Wang, Feng; Chan, Wing-Cheong; Law, Sze Hong; Tsoi, Yee-Kei; Tse, Gary M; Lai, Shui Wun; Wu, Cherry; Yang, Shuyuan; Yang Chan, Emily Ying; Shan Wong, Samuel Yeung; Wang, Mingyi; Song, Lei; Jones, Kristine; Zhu, Bin; Hutchinson, Amy; Hicks, Belynda; Prokunina-Olsson, Ludmila; Garcia-Closas, Montserrat; Chanock, Stephen; Tse, Lap Ah; Yang, Xiaohong R
  3. HGG Advances. 2021, Dec 3; 3(1): 100076.
  1. 16.   Signaling in the crowded cell
  2. Nussinov,Ruth; Tsai,Chung-Jung; Jang,Hyunbum
  3. Current Opinion in Structural Biology. 2021, Dec; 71: 43-50.
  1. 17.   Aligning Tumor Mutational Burden (TMB) quantification across diagnostic platforms: Phase 2 of the Friends of Cancer Research TMB Harmonization Project
  2. Vega, Diana Merino; Yee, Laura M; McShane, Lisa M; Williams,Mickey; Chen,Li; Vilimas, Tomas; Fabrizio, David; Funari, Vincent; Newberg, Justin; Bruce, Lauryn Keeler; Chen, Shu-Jen; Baden, Jonathan; Barrett, J Carl; Beer, Philip; Butler, Matthew; Cheng, Jen-Hao; Conroy, Jeffrey; Cyanam, Dinesh; Eyring, Kenneth; Garcia, Elizabeth; Green, George; Gregersen, Vivi Raundahl; Hellmann, Matthew D; Keefer, Laurel A; Lasiter, Laura; Lazar, Alexander J; Li, Ming-Chung; Macconaill, Laura E; Meier, Kristen; Mellert, Hestia; Pabla, Sarabjot; Pallavajjalla, Aparna; Pestano, Gary; Salgado, Roberto; Samara, Raed; Sokol, Ethan S; Stafford, Phillip; Budczies, Jan; Stenzinger, Albrecht; Tom, Warren; Valkenburg, Kenneth C; Wang, XiaoZhe; Weigman, Victor; Xie, Mingchao; Xie, Qian; Zehir, Ahmet; Zhao, Chen; Zhao, Yingdong; Stewart, Mark D; Allen, Jeff
  3. Annals of oncology : official journal of the European Society for Medical Oncology. 2021, Dec; 32(12): 1626-1636.
  1. 18.   Hematologically important mutations: The autosomal forms of chronic granulomatous disease (third update)
  2. Roos, Dirk; van Leeuwen, Karin; Hsu, Amy P.; Long-Priel,Debra; Begtrup, Amber; Brandon, Rhonda; Rawat, Amit; Vignesh, Pandiarajan; Madkaikar, Manesha; Stasia, Marie Jose; Bakri, Faris Ghalib; de Boer, Martin; Roesler, Joachim; Koker, Nezihe; Koker, M. Yavuz; Jakobsen, Marianne; Bustamante, Jacinta; Bravo Garcia-Morato, Maria; Valdivieso Shephard, Juan Luis; Cagdas, Deniz; Tezcan, Ilhan; Sherkat, Roya; Mortaz, Esmaeil; Fayezi, Abbas; Shahrooei, Mohammad; Wolach, Baruch; Blancas-Galicia, Lizbeth; Kanegane, Hirokazu; Kawai, Toshinao; Condino-Neto, Antonio; Vihinen, Mauno; Zerbe, Christa S.; Holland, Steven M.; Malech, Harry L.; Gallin, John; Kuhns,Doug
  3. Blood cells, molecules & diseases. 2021, Dec; 92
  1. 19.   Mechanism of activation and the rewired network: New drug design concepts
  2. Nussinov,Ruth; Zhang,Mingzhen; Maloney, Ryan; Tsai,Chung-Jung; Yavuz, Bengi Ruken; Tuncbag, Nurcan; Jang, Hyunbum
  3. Medicinal research reviews. 2021, Oct 25; 0198-6325:
  1. 20.   SASH3 variants cause a novel form of X-linked combined immunodeficiency with immune dysregulation
  2. Delmonte, Ottavia M.; Bergerson, Jenna R. E.; Kawai, Tomoki; Kuehn, Hye Sun; McDermott, David H.; Cortese, Irene; Zimmermann, Michael T.; Dobbs, A. Kerry; Bosticardo, Marita; Fink,Dani; Majumdar, Shamik; Palterer, Boaz; Pala, Francesca; Dsouza, Nikita R.; Pouzolles, Marie; Taylor, Naomi; Calvo, Katherine R.; Daley, Stephen R.; Velez, Daniel; Agharahimi, Anahita; Myint-Hpu, Katherine; Dropulic, Lesia K.; Lyons, Jonathan J.; Holland, Steven M.; Freeman, Alexandra F.; Ghosh, Rajarshi; Similuk, Morgan B.; Niemela, Julie E.; Stoddard, Jennifer; Kuhns,Doug; Urrutia, Raul; Rosenzweig, Sergio D.; Walkiewicz, Magdalena A.; Murphy, Philip M.; Notarangelo, Luigi D.
  3. BLOOD. 2021, Sep 23; 138(12): 1019-1033.
  1. 21.   Proteogenomic characterization of pancreatic ductal adenocarcinoma
  2. Cao, Liwei; Huang, Chen; Zhou, Daniel Cui; Hu, Yingwei; Lih, T. Mamie; Savage, Sara R.; Krug, Karsten; Clark, David J.; Schnaubelt, Michael; Chen, Lijun; Leprevost, Felipe da Veiga; Eguez, Rodrigo Vargas; Yang, Weiming; Pan, Jianbo; Wen, Bo; Dou, Yongchao; Jiang, Wen; Liao, Yuxing; Shi, Zhiao; Terekhanova, Nadezhda; Cao, Song; Lu, Rita Jui-Hsien; Li, Yize; Liu, Ruiyang; Zhu, Houxiang; Ronning, Peter; Wu, Yige; Wyczalkowski, Matthew A.; Easwaran, Hariharan; Danilova, Ludmila; Mer, Arvind Singh; Yoo, Seungyeul; Wang, Joshua M.; Liu, Wenke; Haibe-Kains, Benjamin; Thiagarajan,Mathangi; Jewell, Scott D.; Hostetter, Galen; Newton, Chelsea J.; Li, Qing Kay; Roehr, Michael H.; Fenyo, David; Wang, Pei; Nesvizhskii, Alexey; Mani, D. R.; Omenn, Gilbert S.; Boja, Emily S.; Mesri, Mehdi; Robles, Ana; Rodriguez, Henry; Bathe, Oliver F.; Chan, Daniel W.; Hruban, Ralph H.; Ding, Li; Zhang, Bing; Zhang, Hui
  3. Cell. 2021, Sep 16; 184(19): 5031-5052.e26.
  1. 22.   Toward best practice in cancer mutation detection with whole-genome and whole-exome sequencing
  2. Xiao, Wenming; Ren, Luyao; Chen, Zhong; Fang, Li Tai; Zhao,Yongmei; Lack,Justin; Guan, Meijian; Zhu, Bin; Jaeger, Erich; Kerrigan, Liz; Blomquist, Thomas M.; Hung, Tiffany; Sultan, Marc; Idler, Kenneth; Lu, Charles; Scherer, Andreas; Kusko, Rebecca; Moos, Malcolm; Xiao, Chunlin; Sherry, Stephen T.; Abaan, Ogan D.; Chen, Wanqiu; Chen, Xin; Nordlund, Jessica; Liljedahl, Ulrika; Maestro, Roberta; Polano, Maurizio; Drabek, Jiri; Vojta, Petr; Koks, Sulev; Reimann, Ene; Madala, Bindu Swapna; Mercer, Timothy; Miller, Chris; Jacob, Howard; Truong, Tiffany; Moshrefi, Ali; Natarajan, Aparna; Granat, Ana; Schroth, Gary P.; Kalamegham, Rasika; Peters, Eric; Petitjean, Virginie; Walton,Ashley; Shen,Tsai-Wei; Talsania,Keyur; Vera, Cristobal Juan; Langenbach, Kurt; de Mars, Maryellen; Hipp, Jennifer A.; Willey, James C.; Wang, Jing; Shetty,Jyoti; Kriga,Yuliya; Raziuddin,Arati; Tran,Bao; Zheng, Yuanting; Yu, Ying; Cam, Margaret; Jailwala, Parthav; Meerzaman, Daoud; Chen, Qingrong; Yan, Chunhua; Ernest, Ben; Mehra, Urvashi; Jensen, Roderick; Jones, Wendell; Li, Jian-Liang; Papas, Brian N.; Pirooznia, Mehdi; Chen, Yun-Ching; Seifuddin, Fayaz; Li, Zhipan; Liu, Xuelu; Resch, Wolfgang; Wang, Jingya; Wu, Leihong; Yavas, Gokhan; Miles, Corey; Ning, Baitang; Tong, Weida; Mason, Christopher E.; Donaldson, Eric; Lababidi, Samir; Staudt, Louis M.; Tezak, Zivana; Hong, Huixiao; Wang, Charles; Shi, Leming
  3. Nature Biotechnology. 2021, Sep; 39(9): 1141-1150.
  1. 23.   Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing
  2. Fang, Li Tai; Zhu, Bin; Zhao,Yongmei; Chen, Wanqiu; Yang, Zhaowei; Kerrigan, Liz; Langenbach, Kurt; de Mars, Maryellen; Lu, Charles; Idler, Kenneth; Jacob, Howard; Zheng, Yuanting; Ren, Luyao; Yu, Ying; Jaeger, Erich; Schroth, Gary P.; Abaan, Ogan D.; Talsania,Keyur; Lack,Justin; Shen,Tsai-Wei; Chen, Zhong; Stanbouly, Seta; Tran,Bao; Shetty,Jyoti; Kriga,Yuliya; Meerzaman, Daoud; Nguyen, Cu; Petitjean, Virginie; Sultan, Marc; Cam, Margaret; Mehta,Monika; Hung, Tiffany; Peters, Eric; Kalamegham, Rasika; Sahraeian, Sayed Mohammad Ebrahim; Mohiyuddin, Marghoob; Guo, Yunfei; Yao, Lijing; Song, Lei; Lam, Hugo Y. K.; Drabek, Jiri; Vojta, Petr; Maestro, Roberta; Gasparotto, Daniela; Koks, Sulev; Reimann, Ene; Scherer, Andreas; Nordlund, Jessica; Liljedahl, Ulrika; Jensen, Roderick; Pirooznia, Mehdi; Li, Zhipan; Xiao, Chunlin; Sherry, Stephen T.; Kusko, Rebecca; Moos, Malcolm; Donaldson, Eric; Tezak, Zivana; Ning, Baitang; Tong, Weida; Li, Jing; Duerken-Hughes, Penelope; Catalanotti, Claudia; Maheshwari, Shamoni; Shuga, Joe; Liang, Winnie S.; Keats, Jonathan; Adkins, Jonathan; Tassone, Erica; Zismann, Victoria; McDaniel, Timothy; Trent, Jeffrey; Foox, Jonathan; Butler, Daniel; Mason, Christopher E.; Hong, Huixiao; Shi, Leming; Wang, Charles; Xiao, Wenming
  3. Nature biotechnology. 2021, Sep; 39(9): 1151-1160.
  1. 24.   Genomic and evolutionary classification of lung cancer in never smokers
  2. Zhang, Tongwu; Joubert, Philippe; Ansari-Pour, Naser; Zhao, Wei; Hoang, Phuc H.; Lokanga, Rachel; Moye, Aaron L.; Rosenbaum, Jennifer; Gonzalez-Perez, Abel; Martinez-Jimenez, Francisco; Castro, Andrea; Muscarella, Lucia Anna; Hofman, Paul; Consonni, Dario; Pesatori, Angela C.; Kebede, Michael; Li, Mengying; Rothberg, Bonnie E. Gould; Peneva, Iliana; Schabath, Matthew B.; Poeta, Maria Luana; Costantini, Manuela; Hirsch, Daniela; Heselmeyer-Haddad, Kerstin; Hutchinson,Amy; Olanich, Mary; Lawrence,Scott; Lenz,Petra; Duggan, Maire; Bhawsar, Praphulla M. S.; Sang, Jian; Kim, Jung; Mendoza, Laura; Saini, Natalie; Klimczak, Leszek J.; Islam, S. M. Ashiqul; Otlu, Burcak; Khandekar, Azhar; Cole,Nathan; Stewart, Douglas R.; Choi, Jiyeon; Brown, Kevin M.; Caporaso, Neil E.; Wilson, Samuel H.; Pommier, Yves; Lan, Qing; Rothman, Nathaniel; Almeida, Jonas S.; Carter, Hannah; Ried, Thomas; Kim, Carla F.; Lopez-Bigas, Nuria; Garcia-Closas, Montserrat; Shi, Jianxin; Bosse, Yohan; Zhu, Bin; Gordenin, Dmitry A.; Alexandrov, Ludmil B.; Chanock, Stephen J.; Wedge, David C.; Landi, Maria Teresa
  3. Nature genetics. 2021, Sep; 53(9): 1348-1359.
  1. 25.   Hematologically important mutations: X-linked chronic granulomatous disease (fourth update)
  2. Roos, Dirk; van Leeuwen, Karin; Hsu, Amy P; Long-Priel,Debra; Begtrup, Amber; Brandon, Rhonda; Stasia, Marie José; Bakri, Faris Ghalib; Köker, Nezihe; Köker, M Yavuz; Madkaika, Manisha; de Boer, Martin; Garcia-Morato, Maria Bravo; Shephard, Juan Luis Valdivieso; Roesler, Joachim; Kanegane, Hirokazu; Kawai, Toshinao; Di Matteo, Gigliola; Shahrooei, Mohammad; Bustamante, Jacinta; Rawat, Amit; Vignesh, Pandiarajan; Mortaz, Esmaeil; Fayezi, Abbas; Cagdas, Deniz; Tezcan, Ilhan; Kitcharoensakkul, Maleewan; Dinauer, Mary C; Meyts, Isabelle; Wolach, Baruch; Condino-Neto, Antonio; Zerbe, Christa S; Holland, Steven M; Malech, Harry L; Gallin, John I; Kuhns,Doug
  3. Blood cells, molecules & diseases. 2021, Sep; 90: 102587.
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