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  1. 1.   The Design of a Participatory Peptide Nucleic Acid Duplex Crosslinker to Enhance the Stiffness of Self-Assembled Peptide Gels
  2. Sarkar,Srijani; Anderson,Caleb; Schneider,Joel
  3. Angewandte Chemie (International ed. in English). 2023, Dec 06; e202313507.
  1. 2.   Change in Lipofectamine Carrier as a Tool to Fine-Tune Immunostimulation of Nucleic Acid Nanoparticles
  2. Newton,Hannah; Radwan, Yasmine; Xu,Jie; Clogston,Jeffrey; Dobrovolskaia,Marina; Afonin, Kirill A
  3. Molecules (Basel, Switzerland). 2023, Jun 01; 28(11):
  1. 3.   Machine Learning Informs RNA-Binding Chemical Space
  2. Yazdani, Kamyar; Jordan, Deondre; Yang,Mo; Fullenkamp,Chris; Schneekloth,Jay; Calabrese,Dave; Boer, Robert E; Hilimire, Thomas A; Allen, Timothy E H; Khan, Rabia T
  3. Angewandte Chemie (International ed. in English). 2022, Dec 30;
  1. 4.   Artificial Immune Cell, AI-cell, a New Tool to Predict Interferon Production by Peripheral Blood Monocytes in Response to Nucleic Acid Nanoparticles
  2. Chandler, Morgan; Jain, Sankalp; Halman, Justin; Hong, Enping; Dobrovolskaia,Marina; Zakharov, Alexey V; Afonin, Kirill A
  3. Small (Weinheim an der Bergstrasse, Germany). 2022, Oct 10; e2204941.
  1. 5.   Anhydrous Nucleic Acid Nanoparticles for Storage and Handling at Broad Range of Temperatures
  2. Tran, Allison N; Chandler, Morgan; Halman, Justin; Beasock, Damian; Fessler, Adam; McKeough, Riley Q; Lam, Phuong Anh; Furr, Daniel P; Wang, Jian; Cedrone,Edward; Dobrovolskaia,Marina; Dokholyan, Nikolay V; Trammell, Susan R; Afonin, Kirill A
  3. Small (Weinheim an der Bergstrasse, Germany). 2022, Feb 06; e2104814.
  1. 6.   Controlled Organization of Inorganic Materials Using Biological Molecules for Activating Therapeutic Functionalities
  2. Chandler, Morgan; Minevich, Brian; Roark, Brandon; Viard,Mathias; Johnson, M Brittany; Rizvi, Mehedi H; Deaton, Thomas A; Kozlov, Seraphim; Panigaj, Martin; Tracy, Joseph B; Yingling, Yaroslava G; Gang, Oleg; Afonin, Kirill A
  3. ACS applied materials & interfaces. 2021, Aug 25; 13(33): 39030-39041.
  1. 7.   2021: an immunotherapy odyssey and the rise of nucleic acid nanotechnology
  2. Panigaj, Martin; Dobrovolskaia,Marina; Afonin, Kirill A.
  3. NANOMEDICINE. 2021, Jun 24;
  1. 8.   Induction of Cytokines by Nucleic Acid Nanoparticles (NANPs) Depends on the Type of Delivery Carrier
  2. Avila, Yelixza I.; Chandler, Morgan; Cedrone,Edward; Newton,Hannah; Richardson, Melina; Xu,Jie; Clogston,Jeffrey; Liptrott, Neill J.; Afonin, Kirill A.; Dobrovolskaia,Marina
  3. Molecules. 2021, Feb; 26(3):
  1. 9.   The Brighton Collaboration standardized template for collection of key information for benefit-risk assessment of nucleic acid (RNA and DNA) vaccines
  2. Kim, Denny; Robertson, James S.; Excler, Jean-Louis; Condit, Richard C.; Fast, Patricia E.; Gurwith, Marc; Pavlakis,George; Monath, Thomas P.; Smith, Jonathan; Wood, David; Smith, Emily R.; Chen, Robert T.; Kochhar, Sonali
  3. Vaccine. 2020, JUL 22; 38(34): 5556-5561.
  1. 10.   Structural Insights into APOBEC3-Mediated Lentiviral Restriction
  2. Delviks-Frankenberry, Krista A.; Desimmie, Belete A.; Pathak,Vinay
  3. Viruses. 2020, JUN; 12(6):
  1. 11.   A cationic amphiphilic co-polymer as a carrier of nucleic acid nanoparticles (Nanps) for controlled gene silencing, immunostimulation, and biodistribution
  2. Halman, Justin R; Kim, Ki-Taek; Gwak, So-Jung; Pace, Richard; Johnson, Morgan Brittany; Chandler, Morgan R; Rackley, Lauren; Viard,Mathias; Marriott, Ian; Lee, Jeoung Soo; Afonin, Kirill A
  3. Nanomedicine : nanotechnology, biology, and medicine. 2020, Jan; 23: 102094.
  1. 12.   Nucleic acid-induced dimerization of HIV-1 Gag protein
  2. Zhao, Huaying; Datta,Siddhartha; Kim, Sung H.; To, Samuel C.; Chaturvedi, Sumit K.; Rein,Alan; Schuck, Peter
  3. JOURNAL OF BIOLOGICAL CHEMISTRY. 2019, Nov 8; 294(45): 16480-16493.
  1. 13.   RNA2Drawer: Geometrically Strict Drawing of Nucleic Acid Structures with Graphical Structure Editing and Highlighting of Complementary Subsequences
  2. Johnson, Philip Z; Kasprzak,Wojciech; Shapiro,Bruce; Simon, Anne E
  3. RNA biology. 2019, Aug 26; 1-5.
  1. 14.   Evidence for ligandable sites in structured RNA throughout the Protein Data Bank
  2. Hewitt, William M.; Calabrese,Dave; Schneekloth,Jay
  3. BIOORGANIC & MEDICINAL CHEMISTRY. 2019, Jun 1; 27(11): 2253-2260.
  1. 15.   A Suite of Therapeutically-Inspired Nucleic Acid Logic Systems for Conditional Generation of Single-Stranded and Double-Stranded Oligonucleotides
  2. Zakrevsky,Paul; Bindewald,Eckart; Humbertson,Hadley; Viard,Mathias; Dorjsuren, Nomongo; Shapiro,Bruce
  3. Nanomaterials (Basel, Switzerland). 2019, Apr 15; 9(4): pii: E615.
  1. 16.   Toll-Like Receptor-Mediated Recognition of Nucleic Acid Nanoparticles (NANPs) in Human Primary Blood Cells
  2. Hong, Enping; Halman, Justin R; Shah, Ankit; Cedrone,Edward; Truong, Nguyen; Afonin, Kirill A; Dobrovolskaia,Marina
  3. Molecules (Basel, Switzerland). 2019, Mar 2; 24(6): pii: E1094.
  1. 17.   Oxime Ether Lipids as Transfection Agents: Assembly and Complexation with siRNA.
  2. Puri, Anu; Zampino, Serena; Viard, Mathias; Shapiro, Bruce
  3. Methods in molecular biology (Clifton, N.J.). 2017 1632: 241-253.
  1. 18.   Discovery of RNA Binding Small Molecules Using Small Molecule Microarrays
  2. Connelly, Colleen; Abulwerdi, Fardokht; Schneekloth, Jay
  3. Methods in Molecular Biology. 2017 1518: 157-175.
  1. 19.   Mechanistic differences between HIV-1 and SIV nucleocapsid proteins and cross-species HIV-1 genomic RNA recognition.
  2. Post, Klara; Olson, Erik D; Naufer, M Nabuan; Gorelick, Robert J; Rouzina, Ioulia; Williams, Mark C; Musier-Forsyth, Karin; Levin, Judith G
  3. Retrovirology. 2016, Dec 29; 13(1): 89.
  1. 20.   MPGAfold in dengue secondary structure prediction
  2. Kasprzak, W. K.; Shapiro, B. A.
  3. Methods in molecular biology (Clifton, N.J.). 2014, 20-Feb; 1138: 199-224.
  1. 21.   Fundamental differences between the nucleic acid chaperone activities of HIV-1 nucleocapsid protein and Gag or Gag-derived proteins: Biological implications
  2. Wu, T. Y.; Datta, S. A. K.; Mitra, M.; Gorelick, R. J.; Rein, A.; Levin, J. G.
  3. Virology. 2010, Sep; 405(2): 556-567.
  1. 22.   Features, processing states and heterologous protein interactions in the modulation of the retroviral nucleocapsid protein function
  2. Mirambeau, G.; Lyonnais, S.; Gorelick, R. J.
  3. Rna Biology. 2010, Nov-Dec; 7(6): 724-734.
  1. 23.   Nucleic acid chaperone activity of retroviral Gag proteins
  2. Rein, A.
  3. Rna Biology. 2010, Nov-Dec; 7(6): 700-705.
  1. 24.   Identification and analysis of novel transcripts and promoters in the human killer cell immunoglobulin-like receptor (KIR) genes
  2. Li, H.; Wright, P. W.; Anderson, S. K.
  3. Methods in molecular biology (Clifton, N.J.). 2010 612: 377-91.
  1. 25.   The use of conformationally rigid nucleoside probes to study the role of sugar pucker and nucleobase orientation in the thrombin binding aptamer
  2. Saneyoshi, H.; Mazzini, S.; Avino, A.; Portella, G.; Gonzalez, C.; Orozco, M.; Marquez, V. E.; Eritja, R.
  3. Nucleic acids symposium series (2004). 2009 (53): 109-10.
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