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  1. 1.   Deletion of a single CTCF motif at the boundary of a chromatin domain with three FGF genes disrupts gene expression and embryonic development
  2. Chakraborty, Shreeta; Wenzlitschke, Nina; Anderson,Matthew; Eraso, Ariel; Baudic, Manon; Thompson, Joyce J; Evans, Alicia A; Shatford-Adams, Lilly M; Chari,Raj; Awasthi,Roackie; Dale, Ryan K; Lewandoski,Mark; Petros, Timothy J; Rocha, Pedro P
  3. Developmental Cell. 2025, Feb 24;
  1. 2.   Self-extinguishing relay waves enable homeostatic control of human neutrophil swarming
  2. Strickland, Evelyn; Pan, Deng; Godfrey, Christian; Kim, Julia S; Hopke, Alex; Ji, Wencheng; Degrange,Maureen; Villavicencio, Bryant; Mansour, Michael K; Zerbe, Christa S; Irimia, Daniel; Amir, Ariel; Weiner, Orion D
  3. Developmental Cell. 2024, Oct 7; 59(19): 2659-2671.
  1. 3.   Stability and gene strand bias of lambda prophages and chromosome organization in Escherichia coli
  2. Li, Xintian; Gallardo, Oscar; August, Elias; Dassa, Bareket; Court,Don; Stavans, Joel; Arbel-Goren, Rinat
  3. mBio. 2024, Jun 18; e0207823.
  1. 4.   Endogenous EWSR1 Exists in Two Visual Modalities That Reflect Its Associations with Nucleic Acids and Concentration at Sites of Active Transcription
  2. Sundara Rajan, Soumya; Ebegboni, Vernon J; Pichling, Patricio; Ludwig, Katelyn R; Jones, Tamara L; Chari,Raj; Tran, Andy; Kruhlak, Michael J; Loncarek,Jadranka; Caplen, Natasha J
  3. Molecular and Cellular Biology. 2024, Mar 20; 44(3): 103-122.
  1. 5.   Signaling in the crowded cell
  2. Nussinov,Ruth; Tsai,Chung-Jung; Jang,Hyunbum
  3. Current Opinion in Structural Biology. 2021, Dec; 71: 43-50.
  1. 6.   Controlled Organization of Inorganic Materials Using Biological Molecules for Activating Therapeutic Functionalities
  2. Chandler, Morgan; Minevich, Brian; Roark, Brandon; Viard,Mathias; Johnson, M Brittany; Rizvi, Mehedi H; Deaton, Thomas A; Kozlov, Seraphim; Panigaj, Martin; Tracy, Joseph B; Yingling, Yaroslava G; Gang, Oleg; Afonin, Kirill A
  3. ACS applied materials & interfaces. 2021, Aug 25; 13(33): 39030-39041.
  1. 7.   SAVI, in silico generation of billions of easily synthesizable compounds through expert-system type rules
  2. Patel,Hitesh; Ihlenfeldt, Wolf-Dietrich; Judson, Philip N; Moroz, Yurii S; Pevzner, Yuri; Peach,Megan; Delannee,Victorien; Tarasova,Nadya; Nicklaus,Marc
  3. Scientific data. 2020, NOV 11; 7(1): 384.
  1. 8.   An optimized protocol for retina single-cell RNA sequencing
  2. Fadl, Benjamin R.; Brodie,Seth; Malasky,Michael; Boland,Joseph; Kelly,Michael; Kelley, Matthew W.; Boger, Erich; Fariss, Robert; Swaroop, Anand; Campello, Laura
  3. MOLECULAR VISION. 2020, OCT 10; 26: 705-717.
  1. 9.   Translating Embryogenesis to Generate Organoids: Novel Approaches to Personalized Medicine
  2. Sahu,Sounak; Sharan,Shyam
  3. iScience. 2020, SEP 25; 23(9):
  1. 10.   Oncoviruses Can Drive Cancer by Rewiring Signaling Pathways Through Interface Mimicry
  2. Guven Maiorov,Emine; Tsai,Chung-Jung; Nussinov,Ruth
  3. Frontiers in oncology. 2019, Nov 15; 9: 1236.
  1. 11.   Phase separation of Polo-like kinase 4 by autoactivation and clustering drives centriole biogenesis
  2. Park, Jung-Eun; Zhang, Liang; Bang, Jeong Kyu; Andresson,Thorkell; DiMaio, Frank; Lee, Kyung S
  3. Nature communications. 2019, Oct 31; 10(1): 4959.
  1. 12.   Clathrin light chain A drives selective myosin VI recruitment to clathrin-coated pits under membrane tension
  2. Biancospino, Matteo; Buel,Gwen; Niño, Carlos A; Maspero, Elena; di Perrotolo, Rossella Scotto; Raimondi, Andrea; Redlingshöfer, Lisa; Weber, Janine; Brodsky, Frances M; Walters,Kylie; Polo, Simona
  3. Nature communications. 2019, Oct 31; 10(1): 4974.
  1. 13.   Spatial organization of RNA polymerase and its relationship with transcription in Escherichia coli
  2. Weng, Xiaoli; Bohrer, Christopher H; Bettridge, Kelsey; Lagda, Arvin Cesar; Cagliero, Cedric; Jin, Ding Jun; Xiao, Jie
  3. Proceedings of the National Academy of Sciences of the United States of America. 2019, OCT 1; 116(40): 20115-20123.
  1. 14.   Unequivocal determination of caulamidines A and B: application and validation of new tools in the structure elucidation tool box
  2. Milanowski, Dennis J.; Oku, Naoya; Cartner, Laura; Bokesch, Heidi; Williamson, R. Thomas; Sauri, Josep; Liu, Yizhou; Blinov, Kirill A.; Ding, Yuanqing; Li, Xing-Cong; Ferreira, Daneel; Walker, Larry A.; Khan, Shabana; Davies-Coleman, Michael T.; Kelley, Jim; McMahon, James B.; Martin, Gary E.; Gustafson, Kirk
  3. Chemical Science. 2018, Jan 14; 9(2): 307-314.
  1. 15.   Prediction of Host-Pathogen Interactions for Helicobacter pylori by Interface Mimicry and Implications to Gastric Cancer
  2. Guven-Maiorov, Emine; Tsai, Chung-Jung; Ma, Buyong; Nussinov, Ruth
  3. Journal of molecular biology. 2017, Dec 8; 429(24): 3925-3941.
  1. 16.   Nucleolus-like compartmentalization of the transcription machinery in fast-growing bacterial cells
  2. Jin, Ding; Mata Martin, Carmen; Sun, Zhe; Cagliero, Cedric; Zhou, Yan
  3. Critical reviews in biochemistry and molecular biology. 2017, Feb; 52(1): 96-106.
  1. 17.   Systemic flaws cannot be fixed with minor tweaks
  2. Cuss, S. M.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2014, 1-Jul; 111(26): E2635.
  1. 18.   Samarium Iodide-Mediated Reformatsky Reactions for the Stereoselective Preparation of beta-Hydroxy-gamma-amino Acids: Synthesis of Isostatine and Dolaisoleucine
  2. Nelson, C. G.; Burke, T. R.
  3. Journal of Organic Chemistry. 2012, Jan; 77(1): 733-738.
  1. 19.   Microwave-Based Reaction Screening: Tandem Retro-Diels Alder/Diels-Alder Cycloadditions of o-Quinol Dimers
  2. Dong, S. W.; Cahill, K. J.; Kang, M. I.; Colburn, N. H.; Henrich, C. J.; Wilson, J. A.; Beutler, J. A.; Johnson, R. P.; Porco, J. A.
  3. Journal of Organic Chemistry. 2011, Nov; 76(21): 8944-8954.
  1. 20.   An evaluation of the RNase H inhibitory effects of Vietnamese medicinal plant extracts and natural compounds
  2. Tai, B. H.; Nhut, N. D.; Nhiem, N. X.; Quang, T. H.; Nguyen, T. T. N.; Bui, T. T. L.; Huong, T. T.; Wilson, J.; Beutler, J. A.; Ban, N. K.; Cuong, N. M.; Kim, Y. H.
  3. Pharmaceutical Biology. 2011, Oct; 49(10): 1046-1051.
  1. 21.   Gene-specific transcription activation via long-range allosteric shape-shifting
  2. Tsai, C. J.; Nussinov, R.
  3. Biochemical Journal. 2011, Oct; 439: 15-25.
  1. 22.   Enhanced Mechanical Rigidity of Hydrogels Formed from Enantiomeric Peptide Assemblies
  2. Nagy, K. J.; Giano, M. C.; Jin, A.; Pochan, D. J.; Schneider, J. P.
  3. Journal of the American Chemical Society. 2011, Sep; 133(38): 14975-14977.
  1. 23.   The Cytoskeletal Adaptor Protein Band 4.1B Is Required for the Maintenance of Paranodal Axoglial Septate Junctions in Myelinated Axons
  2. Buttermore, E. D.; Dupree, J. L.; Cheng, J.; An, X. L.; Tessarollo, L.; Bhat, M. A.
  3. Journal of Neuroscience. 2011, Jun; 31(22): 8013-8024.
  1. 24.   Impact of chromatin structure on sequence variability in the human genome
  2. Tolstorukov, M. Y.; Volfovsky, N.; Stephens, R. M.; Park, P. J.
  3. Nature Structural & Molecular Biology. 2011, Apr; 18(4): 510-U152.
  1. 25.   Utilization of Nitrophenylphosphates and Oxime-Based Ligation for the Development of Nanomolar Affinity Inhibitors of the Yersinia pestis Outer Protein H (YopH) Phosphatase
  2. Bahta, M.; Lountos, G. T.; Dyas, B.; Kim, S. E.; Ulrich, R. G.; Waugh, D. S.; Burke, T. R.
  3. Journal of Medicinal Chemistry. 2011, Apr; 54(8): 2933-2943.
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