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  1. 1.   Waterless structures in the Protein Data Bank
  2. Wlodawer,Alexander; Dauter, Zbigniew; Rubach, Pawel; Minor, Wladek; Loch, Joanna I; Brzezinski, Dariusz; Gilski, Miroslaw; Jaskolski, Mariusz
  3. IUCrJ. 2024, Nov 01;
  1. 2.   In some cases more complicated approaches to refinement of macromolecular structures are not necessary
  2. Dauter, Zbigniew; Wlodawer,Alexander
  3. IUCrJ. 2024, Jul 01; 11(Pt 4): 643-644.
  1. 3.   P1' specificity of the S219V/R203G mutant tobacco etch virus protease
  2. Golda, Mária; Hoffka, Gyula; Cherry,Scott; Tropea, Joseph E; Lountos,George; Waugh, David S; Wlodawer,Alexander; Tozsér, József; Mótyán, János András
  3. Proteins. 2024, Apr 26;
  1. 4.   Modeling and Analysis of HIV-1 Pol Polyprotein as a Case Study for Predicting Large Polyprotein Structures
  2. Hao,Ming; Imamichi,Tomozumi; Chang,Weizhong
  3. International Journal of Molecular Sciences. 2024, Feb 02; 25(3):
  1. 5.   Delineation of functional subdomains of Huntingtin protein and their interaction with HAP40
  2. Alteen, Matthew G; Deme,Justin; Alvarez, Claudia P; Loppnau, Peter; Hutchinson, Ashley; Seitova, Alma; Chandrasekaran, Renu; Silva Ramos, Eduardo; Secker, Christopher; Alqazzaz, Mona; Wanker, Erich E; Lea, Susan M; Arrowsmith, Cheryl H; Harding, Rachel J
  3. Structure (London, England : 1993). 2023, Sep 7; 31
  1. 6.   The mechanism of activation of monomeric B-Raf V600E
  2. Maloney,Ryan; Zhang,Mingzhen; Jang,Hyunbum; Nussinov,Ruth
  3. Computational and structural biotechnology journal. 2021, Jun 4; 19: 3349-3363.
  1. 7.   Protein crystallography: alive and well
  2. Wlodawer,Alexander
  3. The FEBS journal. 2021, Mar; 288(20): 5786-5787.
  1. 8.   RAS internal tandem duplication disrupts GTPase-activating protein (GAP) binding to activate oncogenic signaling
  2. Nelson, Andrew C; Turbyville,Tommy; Dharmaiah,Sathiya; Rigby,Megan; Yang, Rendong; Wang, Ting-You; Columbus,John; Stephens, Robert; Taylor,Troy; Sciacca, Drew; Onsongo, Getiria; Sarver, Anne; Subramanian, Subbaya; Nissley,Dwight; Simanshu,Dhirendra; Lou, Emil
  3. The Journal of biological chemistry. 2020, JUL 10; 295(28): 9335-9348.
  1. 9.   Structural basis and mechanism of the unfolding-induced activation of HdeA, a bacterial acid response chaperone
  2. Yu, Xing-Chi; Hu, Yunfei; Ding, Jienv; Li, Hongwei; Jin, Changwen
  3. JOURNAL OF BIOLOGICAL CHEMISTRY. 2019, Mar 1; 294(9): 3192-3206.
  1. 10.   Structural disorder in four-repeat Tau fibrils reveals a new mechanism for barriers to cross-seeding of Tau isoforms
  2. Weismiller, Hilary A.; Murphy, Rachel; Wei, Guanghong; Ma,Buyong; Nussinov,Ruth; Margittai, Martin
  3. JOURNAL OF BIOLOGICAL CHEMISTRY. 2018, NOV 9; 293(45): 17336-17348.
  1. 11.   Structural analyses of 4-phosphate adaptor protein 2 yield mechanistic insights into sphingolipid recognition by the glycolipid transfer protein family
  2. Ochoa-Lizarralde, Borja; Gao, Yong-Guang; Popov, Alexander N; Samygina, Valeria R; Zhai, Xiuhong; Mishra, Shrawan K; Boldyrev, Ivan A; Molotkovsky, Julian G; Simanshu, Dhirendra; Patel, Dinshaw J; Brown, Rhoderick E; Malinina, Lucy
  3. Journal of Biological Chemistry. 2018, Sep 11; pii: jbc.RA117.000733.
  1. 12.   Interdomain Stabilization Impairs CD4 Binding and Improves Immunogenicity of the HIV-1 Envelope Trimer
  2. Zhang, Peng; Gorman, Jason; Geng, Hui; Liu, Qingbo; Lin, Yin; Tsybovsky, Yaroslav; Go, Eden P; Dey, Barna; Andine, Tsion; Kwon, Alice; Patel, Mit; Gururani, Deepali; Uddin, Ferzan; Guzzo, Christina; Cimbro, Raffaello; Miao, Huiyi; McKee, Krisha; Chuang, Gwo-Yu; Martin, Loïc; Sironi, Francesca; Malnati, Mauro S; Desaire, Heather; Berger, Edward A; Mascola, John R; Dolan, Michael A; Kwong, Peter D; Lusso, Paolo
  3. Cell Host & Microbe. 2018, Jun 13; 23(6): 832-844.e6.
  1. 13.   PRISM-EM: template interface-based modelling of multi-protein complexes guided by cryo-electron microscopy density maps (vol 72, pg 1137, 2016)
  2. Kuzu, Guray; Keskin, Ozlem; Nussinov, Ruth; Gursoy, Attila
  3. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY. 2018, JAN; 74(Pt 1): 65-66.
  1. 14.   PRISM-EM: template interface-based modelling of multi-protein complexes guided by cryo-electron microscopy density maps
  2. Kuzu, G.; Keskin, O.; Nussinov, R.; Gursoy, A.
  3. Acta crystallographica. Section D, Structural biology. 2016, 1-Oct; 72(Pt 10): 1137-1148.
  1. 15.   MDM1 is a microtubule-binding protein that negatively regulates centriole duplication
  2. Van de Mark, D.; Kong, D.; Loncarek, J.; Stearns, T.
  3. Molecular Biology of the Cell. 2015, 1-Nov; 26(21): 3788-802.
  1. 16.   TrkA in vivo function is negatively regulated by ubiquitination
  2. Kiris, E.; Wang, T.; Yanpallewar, S.; Dorsey, S. G.; Becker, J.; Bavari, S.; Palko, M. E.; Coppola, V.; Tessarollo, L.
  3. Journal of Neuroscience. 2014, 12-Mar; 34(11): 4090-8.
  1. 17.   Allosteric modulators can restore function in an amino acid neurotransmitter receptor by slightly altering intra-molecular communication pathways
  2. Nussinov, R.
  3. British Journal of Pharmacology. 2012, Apr; 165(7): 2110-2112.
  1. 18.   Misfolded amyloid ion channels present mobile beta-sheet subunits in contrast to conventional ion channels
  2. Jang, H.; Arce, F. T.; Capone, R.; Ramachandran, S.; Lal, R.; Nussinov, R.
  3. Biophysical Journal. 2009, Dec 2; 97(11): 3029-37.
  1. 19.   Allosteric activation of E2-RING finger-mediated ubiquitylation by a structurally defined specific E2-binding region of gp78
  2. Das, R.; Mariano, J.; Tsai, Y. C.; Kalathur, R. C.; Kostova, Z.; Li, J.; Tarasov, S. G.; McFeeters, R. L.; Altieri, A. S.; Ji, X.; Byrd, R. A.; Weissman, A. M.
  3. Molecular Cell. 2009, Jun 26; 34(6): 674-85.
  1. 20.   Engineered CH2 domains (nanoantibodies)
  2. Dimitrov, D. S.
  3. Mabs. 2009, Jan-Feb; 1(1): 26-8.
  1. 21.   Dynamics of antibody domains studied by solution NMR
  2. Vu, B. K.; Walsh, J. D.; Dimitrov, D. S.; Ishima, R.
  3. Methods in molecular biology (Clifton, N.J.). 2009 525: 533-43, xv.
  1. 22.   Constructing templates for protein structure prediction by simulation of protein folding pathways
  2. Kifer, I.; Nussinov, R.; Wolfson, H. J.
  3. Proteins-Structure Function and Bioinformatics. 2008 73(2): 380-394.
  1. 23.   Allosteric effects in the marginally stable von Hippel-Lindau tumor suppressor protein and allostery-based rescue mutant design
  2. Liu, J.; Nussinov, R.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2008 105(3): 901-906.
  1. 24.   Global molecular structure and interfaces: Refining an RNA : RNA complex structure using solution X-ray scattering data
  2. Zuo, X. B.; Wang, J. B.; Foster, T. R.; Schwieters, C. D.; Tiede, D. M.; Butcher, S. E.; Wang, Y. X.
  3. Journal of the American Chemical Society. 2008 130(11): 3292-3293.
  1. 25.   Numerology versus reality: a voice in a recent dispute
  2. Jaskolski, M.; Gilski, M.; Dauter, Z.; Wlodawer, A.
  3. Acta Crystallographica Section D-Biological Crystallography. 2007, Dec; 63: 1282-1283.
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