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  1. 1.   Antiretroviral Therapy within Two Years of HIV Acquisition is Associated with Fewer Viral Blips: A Retrospective Analysis of Over 20 Years of Data from the U.S. Military HIV Natural History Study
  2. Crowell, Trevor A; Hsieh, Hsing-Chuan; Wang, Xun; Chu, Xiuping; Gayle, Britt; Berjohn, Catherine M; Blaylock, Jason M; Yabes, Joseph M; Larson, Derek T; Powers,John; O'Connell, Robert J; Ganesan, Anuradha; Agan, Brian K
  3. Clinical Infectious Diseases : an official publication of the Infectious Diseases Society of America. 2025, Mar 10;
  1. 2.   HIV post-treatment controllers have distinct immunological and virological features
  2. Etemad, Behzad; Sun, Xiaoming; Li, Yijia; Melberg, Meghan; Moisi, Daniela; Gottlieb, Rachel; Ahmed, Hayat; Aga, Evgenia; Bosch, Ronald J; Acosta, Edward P; Yuki,Yuko; Martin, Maureen P; Carrington,Mary; Gandhi, Rajesh T; Jacobson, Jeffrey M; Volberding, Paul; Connick, Elizabeth; Mitsuyasu, Ronald; Frank, Ian; Saag, Michael; Eron, Joseph J; Skiest, Daniel; Margolis, David M; Havlir, Diane; Schooley, Robert T; Lederman, Michael M; Yu, Xu G; Li, Jonathan Z
  3. Proceedings of the National Academy of Sciences of the United States of America. 2023, Mar 14; 120(11): e2218960120.
  1. 3.   Highlights from the Tenth International Workshop on HIV Persistence during Therapy, December 13-16, 2022, Miami, Florida-USA
  2. Archin, N; Bar, K J; Burdo, T; Caskey, M; Chahroudi, A; Farzan, M; Ho, Y-C; Jones, R B; Kearney,Mary; Kuritzkes, D; Margolis, D; Martinez-Picado, J; Okoye, A; Salgado, M; Stevenson, Mario
  3. Journal of Virus Eradication. 2023, Mar; 9(1): 100315.
  1. 4.   HIV DNA persists in hepatocytes in people with HIV-hepatitis B co-infection on antiretroviral therapy
  2. Zerbato, Jennifer M; Avihingsanon, Anchalee; Singh, Kasha P; Zhao, Wei; Deleage,Claire; Rosen, Elias; Cottrell, Mackenzie L; Rhodes, Ajantha; Dantanarayana, Ashanti; Tumpach, Carolin; Tennakoon, Surekha; Crane, Megan; Price, David J; Braat, Sabine; Mason, Hugh; Roche, Michael; Kashuba, Angela D M; Revill, Peter A; Audsley, Jennifer; Lewin, Sharon R
  3. EBioMedicine. 2022, Dec 08; 87: 104391.
  1. 5.   Imaging and biopsy of HIV-infected individuals undergoing analytic treatment interruption
  2. Lau, Chuen-Yen; Adan, Matthew A; Earhart, Jessica; Seamon, Cassie; Nguyen,Thuy; Savramis, Ariana; Adams, Lindsey; Zipparo, Mary-Elizabeth; Madeen,Erin; Huik, Kristi; Grossman, Zehava; Chimukangara, Benjamin; Wulan, Wahyu Nawang; Millo, Corina; Nath, Avindra; Smith, Bryan R; Ortega-Villa, Ana M; Proschan, Michael; Wood, Bradford J; Hammoud, Dima A; Maldarelli,Frank
  3. Frontiers in Medicine. 2022, Aug; 9: 979756.
  1. 6.   Immune correlates of HIV-1 reservoir cell decline in early-treated infants
  2. Hartana, Ciputra Adijaya; Garcia-Broncano, Pilar; Rassadkina, Yelizaveta; Lian, Xiaodong; Jiang, Chenyang; Einkauf, Kevin B; Maswabi, Kenneth; Ajibola, Gbolahan; Moyo, Sikhulile; Mohammed, Terence; Maphorisa, Comfort; Makhema, Joseph; Yuki,Yuko; Martin,Pat; Bennett, Kara; Jean-Philippe, Patrick; Viard,Mathias; Hughes, Michael D; Powis, Kathleen M; Carrington,Mary; Lockman, Shahin; Gao, Ce; Yu, Xu G; Kuritzkes, Daniel R; Shapiro, Roger; Lichterfeld, Mathias
  3. Cell Reports. 2022, Jul 19; 40(3): 111126.
  1. 7.   Clonal Expansion of Infected CD4+T Cells in People Living with HIV
  2. Coffin, John M.; Hughes, Stephen H.
  3. Viruses. 2021, Oct 15; 13(10):
  1. 8.   Tracking HIV-1-Infected Cell Clones Using Integration Site-Specific qPCR
  2. Brandt, Leah D; Guo,Amber; Joseph, Kevin W; Jacobs, Jana L; Naqvi, Asma; Coffin, John M; Kearney,Mary; Halvas, Elias K; Wu,Xiaolin; Hughes,Stephen; Mellors, John W
  3. Viruses. 2021, Jul; 13(7):
  1. 9.   Transient viral replication during analytical treatment interruptions in SIV infected macaques can alter the rebound-competent viral reservoir
  2. Immonen,Taina; Fennessey,Christine; Lipkey,Leslie; Thorpe, Abigail; Del Prete,Greg; Lifson,Jeffrey; Davenport, Miles P.; Keele,Brandon
  3. PLOS PATHOGENS. 2021, Jun; 17(6):
  1. 10.   HIV-1 Persistence in Children during Suppressive ART
  2. Katusiime,Mary Grace; Van Zyl, Gert U.; Cotton, Mark F.; Kearney,Mary
  3. Viruses. 2021, Jun; 13(6):
  1. 11.   Ultrasensitive detection and quantification of viral nucleic acids with raindance droplet digital PCR (ddPCR)
  2. Long, Samuel; Berkemeier,Brian
  3. Methods (San Diego, Calif.). 2021, May 03; 201: 49-64.
  1. 12.   Antibody-mediated depletion of viral reservoirs is limited in SIV-infected macaques treated early with antiretroviral therapy
  2. Swanstrom,Adrienne; Immonen,Taina; Oswald,Kelli; Pyle,Cathi; Thomas,James; Bosche,Bj; Silipino,Lorna; Hull,Mike; Newman,Laura; Coalter, Vicky; Wiles,Adam; Wiles,Rodney; Kiser,Jacob; Morcock,David; Shoemaker,Rebecca; Fast,Randy; Breed,Matthew; Kramer,Josh; Donohue,Duncan; Malys,Tyler; Fennessey,Christine; Trubey,Charles; Deleage,Claire; Estes, Jacob D.; Lifson,Jeffrey; Keele,Brandon; Del Prete,Greg
  3. The Journal of Clinical Investigation. 2021, Mar 15; 131(6):
  1. 13.   Development of a reverse transcription droplet digital PCR (RT-ddPCR) assay for sensitive detection of simian immunodeficiency virus (SIV)
  2. Long, Samuel; Berkemeier, Brian
  3. Virology Journal. 2021, Feb 15; 18(1):
  1. 14.   HIV-1 viremia not suppressible by antiretroviral therapy can originate from large T cell clones producing infectious virus
  2. Halvas, Elias K; Joseph, Kevin W; Brandt, Leah D; Guo,Amber; Sobolewski, Michele D; Jacobs, Jana L; Tumiotto, Camille; Bui, John K; Cyktor, Joshua C; Keele,Brandon; Morse, Gene D; Bale, Michael J; Shao,Wei; Kearney,Mary; Coffin, John M; Rausch,Jason; Wu,Xiaolin; Hughes,Stephen; Mellors, John W
  3. The Journal of clinical investigation. 2020, NOV 2; 130(11): 5847-5857.
  1. 15.   Animal models for COVID-19
  2. Munoz-Fontela, Cesar; Dowling, William E.; Funnell, Simon G. P.; Gsell, Pierre-S.; Riveros-Balta, A. Ximena; Albrecht, Randy A.; Andersen, Hanne; Baric, Ralph S.; Carroll, Miles W.; Cavaleri, Marco; Qin, Chuan; Crozier,Ian; Dallmeier, Kai; de Waal, Leon; de Wit, Emmie; Delang, Leen; Dohm, Erik; Duprex, W. Paul; Falzarano, Darryl; Finch, Courtney L.; Frieman, Matthew B.; Graham, Barney S.; Gralinski, Lisa E.; Guilfoyle, Kate; Haagmans, Bart L.; Hamilton, Geraldine A.; Hartman, Amy L.; Herfst, Sander; Kaptein, Suzanne J. F.; Klimstra, William B.; Knezevic, Ivana; Krause, Philip R.; Kuhn, Jens H.; Le Grand, Roger; Lewis, Mark G.; Liu, Wen-Chun; Maisonnasse, Pauline; McElroy, Anita K.; Munster, Vincent; Oreshkova, Nadia; Rasmussen, Angela L.; Rocha-Pereira, Joana; Rockx, Barry; Rodriguez, Estefania; Rogers, Thomas F.; Salguero, Francisco J.; Schotsaert, Michael; Stittelaar, Koert J.; Jan Thibaut, Hendrik; Tseng, Chien-Te; Vergara-Alert, Julia; Beer, Martin; Brasel, Trevor; Chan, Jasper F. W.; Garcia-Sastre, Adolfo; Neyts, Johan; Perlman, Stanley; Reed, Douglas S.; Richt, Juergen A.; Roy, Chad J.; Segales, Joaquim; Vasan, Seshadri S.; Henao-Restrepo, Ana Maria; Barouch, Dan H.
  3. Nature. 2020, OCT 22; 586(7830): 509-515.
  1. 16.   Development and optimization of a simian immunodeficiency virus (SIV) droplet digital PCR (ddPCR) assay
  2. Long, Samuel; Berkemeier,Brian
  3. PloS one. 2020, OCT 9; 15(10): pii: e0240447.
  1. 17.   Inflammatory Biomarkers Do Not Differ Between Persistently Seronegative vs Seropositive People With HIV After Treatment in Early Acute HIV Infection
  2. Cai, Catherine W; Pinyakorn, Suteeraporn; Kroon, Eugène; de Souza, Mark; Colby, Donn J; Pankam, Tippawan; Pattanachaiwit, Supanit; Ubolyam, Sasiwimol; Rupert,Adam; Lallemand,Perrine; Dewar,Robin; Highbarger,Helene; Ananworanich, Jintanat; Vasan, Sandhya; Sereti, Irini
  3. Open Forum Infectious Diseases. 2020, Sep; 7(9): pii: ofaa383.
  1. 18.   CTLA-4 and PD-1 dual blockade induces SIV reactivation without control of rebound after antiretroviral therapy interruption
  2. Harper, Justin; Gordon, Shari; Chan, Chi Ngai; Wang, Hong; Lindemuth, Emily; Galardi, Cristin; Falcinelli, Shane D.; Raines, Samuel L. M.; Read, Jenna L.; Nguyen, Kevin; McGary, Colleen S.; Nekorchuk, Michael; Busman-Sahay, Kathleen; Schawalder, James; King, Colin; Pino, Maria; Micci, Luca; Cervasi, Barbara; Jean, Sherrie; Sanderson, Andrew; Johns, Brian; Koblansky, A. Alicia; Amrine-Madsen, Heather; Lifson,Jeffrey; Margolis, David M.; Silvestri, Guido; Bar, Katharine J.; Favre, David; Estes, Jacob D.; Paiardini, Mirko
  3. NATURE MEDICINE. 2020, Apr; 26(4): 519-528.
  1. 19.   Assessing the impact of AGS-004, a dendritic cell-based immunotherapy, and vorinostat on persistent HIV-1 Infection
  2. Gay, Cynthia L; Kuruc, Joann D; Falcinelli, Shane D; Warren, Joanna A; Reifeis, Sarah A; Kirchherr, Jennifer L; James, Katherine S; Dewey, Morgan G; Helms, Alyson; Allard, Brigitte; Stuelke, Erin; Gamble, Alicia; Plachco, Ana; Gorelick,Robert; Eron, Joseph J; Hudgens, Michael; Garrido, Carolina; Goonetilleke, Nilu; DeBenedette, Mark A; Tcherepanova, Irina Y; Nicolette, Charles A; Archin, Nancie M; Margolis, David M
  3. Scientific reports. 2020, Mar 20; 10(1): 5134.
  1. 20.   Intact HIV proviruses persist in children 7-9 years after initiation of ART in the first year of life
  2. Katusiime, Mary Grace; Halvas, Elias K; Wright, Imogen; Joseph, Kevin; Bale,Michael; Kirby-McCullough, Bronwyn; Engelbrecht, Susan; Shao,Wei; Hu,Wei-Shau; Cotton, Mark F; Mellors, John W; Kearney,Mary; van Zyl, Gert U
  3. Journal of virology. 2020, FEB; 94(4):
  1. 21.   Robust and persistent reactivation of SIV and HIV by N-803 and depletion of CD8+ cells
  2. McBrien, Julia Bergild; Mavigner, Maud; Franchitti, Lavinia; Smith, S Abigail; White, Erick; Tharp, Gregory K; Walum, Hasse; Busman-Suhay, Kathleen; Aguilera-Sandoval, Christian R; Thayer, William O; Spagnuolo, Rae Ann; Kovarova, Martina; Wahl, Angela; Cervasi, Barbara; Margolis, David M; Vanderford, Thomas H; Carnathan, Diane G; Paiardini, Mirko; Lifson,Jeffrey; Lee, John H; Safrit, Jeffrey T; Bosinger, Steven E; Estes, Jacob D; Derdeyn, Cynthia A; Garcia, J Victor; Kulpa, Deanna A; Chahroudi, Ann; Silvestri, Guido
  3. Nature. 2020, Jan 22;
  1. 22.   HIV Proviral Sequence Database (PSD): A New Public Database for Near Full-Length HIV Proviral Sequences and Their Meta-Analyses
  2. Shao,Wei; Shan,Jigui; Hu,Wei-Shau; Halvas, Elias Konstantine; Mellors, John W; Coffin, John M; Kearney,Mary
  3. AIDS research and human retroviruses. 2020, Jan 1; 36(1): 1-3.
  1. 23.   Origin of rebound virus in chronically SIV-infected Rhesus monkeys following treatment discontinuation
  2. Liu, Po-Ting; Keele,Brandon; Abbink, Peter; Mercado, Noe B; Liu, Jinyan; Bondzie, Esther A; Chandrashekar, Abishek; Borducchi, Erica N; Hesselgesser, Joseph; Mish, Michael; Chin, Gregory; Bekerman, Elena; Geleziunas, Romas; Barouch, Dan H
  3. Nature communications. 2020, 10 27; 11(1): 5412.
  1. 24.   Principles Governing Establishment versus Collapse of HIV-1 Cellular Spread
  2. Hataye, Jason M; Casazza, Joseph P; Best, Katharine; Liang, C Jason; Immonen,Taina; Ambrozak, David R; Darko, Samuel; Henry, Amy R; Laboune, Farida; Maldarelli,Frank; Douek, Daniel C; Hengartner, Nicolas W; Yamamoto, Takuya; Keele,Brandon; Perelson, Alan S; Koup, Richard A
  3. Cell host & microbe. 2019, Dec 11; 26(6): 748-763.e20.
  1. 25.   HIV Infected T Cells Can Proliferate in vivo Without Inducing Expression of the Integrated Provirus
  2. Musick,Andrew; Spindler,Jon; Boritz, Eli; Pérez, Liliana; Crespo-Vélez, Daniel; Patro,Sean; Sobolewski, Michele D; Bale,Michael; Reid, Carolyn; Keele,Brandon; Capoferri, Adam; Shao,Wei; Wiegand,Ann; Simonetti, Francesco R; Mellors, John W; Hughes,Stephen; Coffin, John M; Maldarelli,Frank; Kearney,Mary
  3. Frontiers in microbiology. 2019, OCT 1; 10: 2204.
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