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  1. 1.   Converting tabular data into images for deep learning with convolutional neural networks
  2. Zhu, Yitan; Brettin, Thomas; Xia, Fangfang; Partin, Alexander; Shukla, Maulik; Yoo, Hyunseung; Evrard,Yvonne; Doroshow, James H.; Stevens, Rick L.
  3. Scientific reports. 2021, May 31; 11(1):
  1. 2.   A network-based deep learning methodology for stratification of tumor mutations
  2. Liu, Chuang; Han, Zhen; Zhang, Zi-Ke; Nussinov,Ruth; Cheng, Feixiong
  3. Bioinformatics. 2021, Jan 08; 37(1): 82-88.
  1. 3.   Promoting evidence-based practices for breast cancer care through web-based collaborative learning
  2. Cira,Mishka; Tesfay, R; Zujewski, J A; Sinulingga, D T; Aung, S; Mwakatobe, K; Lasebikan, N; Nkegoum, B; Duncan, K; Dvaladze, A
  3. Journal of cancer policy. 2020, Sep; 25: pii: 100242.
  1. 4.   Survey on Scientific Shared Resource Rigor and Reproducibility
  2. Knudtson, Kevin L; Carnahan, Robert H; Hegstad-Davies, Rebecca L; Fisher, Nancy C; Hicks,Belynda; Lopez, Peter A; Meyn, Susan M; Mische, Sheenah M; Weis-Garcia, Frances; White, Lisa D; Sol-Church, Katia
  3. Journal of biomolecular techniques : JBT. 2019, Sep; 30(3): 36-44.
  1. 5.   The chromosome 2p21 region harbors a complex genetic architecture for association with risk for renal cell carcinoma
  2. Han, S. S.; Yeager, M.; Moore, L. E.; Wei, M. H.; Pfeiffer, R.; Toure, O.; Purdue, M. P.; Johansson, M.; Scelo, G.; Chung, C. C.; Gaborieau, V.; Zaridze, D.; Schwartz, K.; Szeszenia-Dabrowska, N.; Davis, F.; Bencko, V.; Colt, J. S.; Janout, V.; Matveev, V.; Foretova, L.; Mates, D.; Navratilova, M.; Boffetta, P.; Berg, C. D.; Grubb, R. L.; Stevens, V. L.; Thun, M. J.; Diver, W. R.; Gapstur, S. M.; Albanes, D.; Weinstein, S. J.; Virtamo, J.; Burdett, L.; Brisuda, A.; McKay, J. D.; Fraumeni, J. F.; Chatterjee, N.; Rosenberg, P. S.; Rothman, N.; Brennan, P.; Chow, W. H.; Tucker, M. A.; Chanock, S. J.; Toro, J. R.
  3. Human Molecular Genetics. 2012, Mar; 21(5): 1190-1200.
  1. 6.   Field evaluation of five rapid diagnostic tests for screening of HIV-1 infections in rural Rakai, Uganda
  2. Kagulire, S. C.; Opendi, P.; Stamper, P. D.; Nakavuma, J. L.; Mills, L. A.; Makumbi, F.; Gray, R. H.; Shott, J. P.; Serwadda, D.; Reynolds, S. J.
  3. International Journal of Std & Aids. 2011, Jun; 22(6): 308-309.
  1. 7.   Comparing interfacial dynamics in protein-protein complexes: an elastic network approach
  2. Zen, A.; Micheletti, C.; Keskin, O.; Nussinov, R.
  3. Bmc Structural Biology. 2010, Aug; 10: 13.
  1. 8.   MouseIndelDB: a database integrating genomic indel polymorphisms that distinguish mouse strains
  2. Akagi, K.; Stephens, R. M.; Li, J. F.; Evdokimov, E.; Kuehn, M. R.; Volfovsky, N.; Symer, D. E.
  3. Nucleic Acids Research. 2010, Jan; 38(Database issue): D600-D606.
  1. 9.   Mapping of the Domestic Cat "SILVER" Coat Color Locus Identifies a Unique Genomic Location for Silver in Mammals
  2. Menotti-Raymond, M.; David, V. A.; Eizirik, E.; Roelke, M. E.; Ghaffari, H.; O'Brien, S. J.
  3. Journal of Heredity. 2009 100: S8-S13.
  1. 10.   cis sequence effects on gene expression
  2. Bergen, A. W.; Baccarelli, A.; McDaniel, T. K.; Kuhn, K.; Pfeiffer, R.; Kakol, J.; Bender, P.; Jacobs, K.; Packer, B.; Chanock, S. J.; Yeager, M.
  3. Bmc Genomics. 2007, Aug; 8
  1. 11.   Effects of select PM-associated metals on alveolar macrophage phosphorylated ERK1 and-2 and iNOS expression during ongoing alteration in iron homeostasis
  2. Prophete, C.; Maciejczyk, P.; Salnikow, K.; Gould, T.; Larson, T.; Koenig, J.; Jaques, P.; Sioutas, C.; Lippmann, M.; Cohen, M.
  3. Journal of Toxicology & Environmental Health-Part A-Current Issues. 2006, MAY 15; 69(10): 935-951.
  1. 12.   Development of a quantitative cell-based ELISA, for a humanized anti-IL-2/IL-15 receptor beta antibody (HuMik beta(1)), and correlation with functional activity using an antigen-transfected murine cell line
  2. Yang, X. Y.; Chen, E.; Jiang, H. G.; Hartmann, W. K.; Mitra, G.; Hecht, T.; Soman, G.
  3. Journal of Immunological Methods. 2006, APR 20; 311(1-2): 71-80.
  1. 13.   International collaboration in drug discovery and development from natural sources
  2. Cragg, G. M.; Newman, D. J.
  3. Pure and Applied Chemistry. 2005, NOV; 77(11): 1923-1942.
  1. 14.   Seroprevalence and genomic divergence of circulating strains of Feline immunodeficiency virus among Felidae and Hyaenidae species
  2. Troyer, J. L.; Pecon-Slattery, J.; Roelke, M. E.; Johnson, W.; Vande Woude, S.; Vazquez-Salat, N.; Brown, M.; Frank, L.; Woodroffe, R.; Winterbach, C.; Winterbach, H.; Hemson, G.; Bush, M.,; Alexander, K. A.; Revilla, E.; O'Brien, S. J.
  3. Journal of Virology. 2005, JUL; 79(13): 8282-8294.
  1. 15.   Role of Nbs1 in the activation of the Atm kinase revealed in humanized mouse models
  2. Difilippantonio, S.; Celeste, A.; Fernandez-Capetillo, O.; Chen, H. T.; San Martin, B. R.; Van Laethem, F.; Yang, Y. P.; Petukhova, G. V.; Eckhaus, M.; Feigenbaum, L.; Manova, K.; Kruhlak, M.; Camerini-Otero, R. D.; Sharan, S.; Nussenzweig, M.; Nussenzweig, A.
  3. Nature Cell Biology. 2005, JUL; 7(7): 675-U56.
  1. 16.   Efficacy, plasma pharmacokinetics, and safety of icofungipen, an inhibitor of Candida isoleucyl-tRNA synthetase, in treatment of experimental disseminated candidiasis in persistently neutropenic rabbits
  2. Petraitiene, R.; Petraitis, V.; Kelaher, A. M.; Sarafandi, A. A.; Mickiene, D.; Groll, A. H.; Sein, T.; Bacher, J.; Walsh, T. J.
  3. Antimicrobial Agents and Chemotherapy. 2005, MAY; 49(5): 2084-2092.
  1. 17.   Big cat genomics
  2. O'Brien, S. J.; Johnson, W. E.
  3. Annual review of genomics and human genetics. 2005 6: 407-429.
  1. 18.   Selective inhibition of HIV-1 reverse transcriptase-associated ribonuclease H activity by hydroxylated tropolones
  2. Budihas, S. R.; Gorshkova, I.; Gaidamakov, S.; Wamiru, A.; Bona, M. K.; Parniak, M. A.; Crouch, R. J.; McMahon, J. B.; Beutler, J. A.; Le Grice, S. F. J.
  3. Nucleic Acids Research. 2005 33(4): 1249-1256.
  1. 19.   Efficacy and safety of generic amphotericin B in experimental pulmonary aspergillosis
  2. Petraitis, V.; Petraitiene, R.; Lin, P. X.; Calis, K.; Kelaher, A. M.; Muray, H. A.; Mya-San, C.; Mickiene, D.; Bacher, J.; Walsh, T. J.
  3. Antimicrobial Agents and Chemotherapy. 2005 49(4): 1642-1645.
  1. 20.   Development and characterization of microsatellite loci in the endangered oyster mussel Epioblasma capsaeformis (Bivalvia : Unionidae)
  2. Jones, J. W.; Culver, M.; David, V.; Struthers, J.; Johnson, N. A.; Neves, R. J.; O'Brien, S. J.; Hallerman, E. M.
  3. Molecular Ecology Notes. 2004, DEC; 4(4): 649-652.
  1. 21.   Efficacy of PLD-118, a novel inhibitor of Candida isoleucyl-tRNA synthetase, against experimental oropharyngeal and Esophageal candidiasis caused by fluconazole-resistant C albicans
  2. Petraitis, V.; Petraitiene, R.; Kelaher, A. M.; Sarafandi, A. A.; Sein, T.; Mickiene, D.; Bacher, J.; Groll, A. H.; Walsh, T. J.
  3. Antimicrobial Agents and Chemotherapy. 2004, OCT; 48(10): 3959-3967.
  1. 22.   Human ORFeome version 1.1: A platform for reverse proteomics
  2. Rual, J. F.; Hirozane-Kishikawa, T.; Hao, T.; Bertin, N.; Li, S. M.; Dricot, A.; Li, N.; Rosenberg, J.; Lamesch, P.; Vidalain, P. O.; Clingingsmith, T. R.; Hartley, J. L.; Esposito, D.; Cheo, D.; Moore, T.; Simmons, B.; Sequerra, R.; Bosak, S.; Doucette-Stamm, L.; Le Peuch, C.; Vandenhaute, J.; Cusick, M. E.; Albala, J. S.; Hill, D. E.; Vidal, M.
  3. Genome Research. 2004, OCT; 14(10B): 2128-2135.
  1. 23.   Detection of galactomannan antigenemia in patients receiving piperacillin-tazobactam and correlations between in vitro, in vivo, and clinical properties of the drug-antigen interaction
  2. Walsh, T. J.; Shoham, S.; Petraitiene, R.; Sein, T.; Schaufele, R.; Kelaher, A.; Murray, H.; Mya-San, C.; Bacher, J.; Petraitis, V.
  3. Journal of Clinical Microbiology. 2004, OCT; 42(10): 4744-4748.
  1. 24.   Academia-industry collaboration: An integral element for building "omic" resources
  2. Hill, D. E.; Brasch, M. A.; del Campo, A. A.; Doucette-Stamm, L.; Garrels, J. I.; Glaven, J.; Hartley, J. L.; Hudson, J. R.; Moore, T.; Vidal, M.
  3. Genome Research. 2004, OCT; 14(10B): 2010-2014.
  1. 25.   SNP500Cancer: a public resource for sequence validation and assay development for genetic variation in candidate genes
  2. Packer, B. R.; Yeager, M.; Staats, B.; Welch, R.; Crenshaw, A.; Kiley, M.; Eckert, A.; Beerman, M.; Miller, E.; Bergen, A.; Rothman, N.; Strausberg, R.; Chanock, S. J.
  3. Nucleic Acids Research. 2004 32: D528-D532.
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