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  1. 1.   My personal mutanome: a computational genomic medicine platform for searching network perturbing alleles linking genotype to phenotype
  2. Zhou, Yadi; Zhao, Junfei; Fang, Jiansong; Martin, William; Li, Lang; Nussinov,Ruth; Chan, Timothy A.; Eng, Charis; Cheng, Feixiong
  3. Genome Biology. 2021, Jan 29; 22(1):
  1. 2.   Proteogenomic Characterization Reveals Therapeutic Vulnerabilities in Lung Adenocarcinoma
  2. Gillette, Michael A; Satpathy, Shankha; Cao, Song; Dhanasekaran, Saravana M; Vasaikar, Suhas V; Krug, Karsten; Petralia, Francesca; Li, Yize; Liang, Wen-Wei; Reva, Boris; Krek, Azra; Ji, Jiayi; Song, Xiaoyu; Liu, Wenke; Hong, Runyu; Yao, Lijun; Blumenberg, Lili; Savage, Sara R; Wendl, Michael C; Wen, Bo; Li, Kai; Tang, Lauren C; MacMullan, Melanie A; Avanessian, Shayan C; Kane, M Harry; Newton, Chelsea J; Cornwell, MacIntosh; Kothadia, Ramani B; Ma, Weiping; Yoo, Seungyeul; Mannan, Rahul; Vats, Pankaj; Kumar-Sinha, Chandan; Kawaler, Emily A; Omelchenko, Tatiana; Colaprico, Antonio; Geffen, Yifat; Maruvka, Yosef E; da Veiga Leprevost, Felipe; Wiznerowicz, Maciej; Gümüs, Zeynep H; Veluswamy, Rajwanth R; Hostetter, Galen; Heiman, David I; Wyczalkowski, Matthew A; Hiltke, Tara; Mesri, Mehdi; Kinsinger, Christopher R; Boja, Emily S; Omenn, Gilbert S; Chinnaiyan, Arul M; Rodriguez, Henry; Li, Qing Kay; Jewell, Scott D; Thiagarajan,Mathangi; Getz, Gad; Zhang, Bing; Fenyö, David; Ruggles, Kelly V; Cieslik, Marcin P; Robles, Ana I; Clauser, Karl R; Govindan, Ramaswamy; Wang, Pei; Nesvizhskii, Alexey I; Ding, Li; Mani, D R; Carr, Steven A
  3. Cell. 2020, Jul 09; 182(1): 200-225.e35.
  1. 3.   Tumour predisposition and cancer syndromes as models to study gene-environment interactions
  2. Carbone, Michele; Arron, Sarah T.; Beutler, Bruce; Bononi, Angela; Cavenee, Webster; Cleaver, James E.; Croce, Carlo M.; D'Andrea, Alan; Foulke, William D.; Gaudino, Giovanni; Groden, Joanna L.; Henske, Elizabeth P.; Hickson, Ian D.; Hwang, Paul M.; Kolodner, Richard D.; Mak, Tak W.; Malkin, David; Monnat, Raymond J. Jr Jr; Novelli, Flavia; Pass, Harvey; Petrini, John H.; Schmidt,Laura; Yang, Haining
  3. Nature reviews. Cancer. 2020, May 29;
  1. 4.   Immune gene expression profiling reveals heterogeneity in luminal breast tumors
  2. Zhu, Bin; Tse, Lap Ah; Wang,Difei; Koka, Hela; Zhang, Tongwu; Abubakar, Mustapha; Lee, Priscilla; Wang, Feng; Wu, Cherry; Tsang, Koon Ho; Chan, Wing-Cheong; Law, Sze Hong; Li, Mengjie; Li, Wentao; Wu, Suyang; Liu, Zhiguang; Huang, Bixia; Zhang, Han; Tang, Eric; Kan, Zhengyan; Lee, Soohyeon; Park, Yeon Hee; Nam, Seok Jin; Wang, Mingyi; Sun, Xuezheng; Jones, Kristine; Zhu,Bin; Hutchinson,Amy; Hicks,Belynda; Prokunina-Olsson, Ludmila; Shi, Jianxin; Garcia-Closas, Montserrat; Chanock, Stephen; Yang, Xiaohong R
  3. Breast cancer research : BCR. 2019, Dec 19; 21(1): 147.
  1. 5.   Review: Precision medicine and driver mutations: Computational methods, functional assays and conformational principles for interpreting cancer drivers
  2. Nussinov,Ruth; Jang,Hyunbum; Tsai,Chung-Jung; Cheng, Feixiong
  3. PLoS computational biology. 2019, Mar; 15(3):
  1. 6.   Personal Mutanomes Meet Modern Oncology Drug Discovery and Precision Health
  2. Cheng, Feixiong; Liang, Han; Butte, Atul J.; Eng, Charis; Nussinov, Ruth
  3. Pharmacological reviews. 2019, Jan; 71(1): 1-19.
  1. 7.   Von Hippel-Lindau (VHL) Inactivation in Sporadic Clear Cell Renal Cancer: Associations with Germline VHL Polymorphisms and Etiologic Risk Factors
  2. Moore, L. E.; Nickerson, M. L.; Brennan, P.; Toro, J. R.; Jaeger, E.; Rinsky, J.; Han, S. S.; Zaridze, D.; Matveev, V.; Janout, V.; Kollarova, H.; Bencko, V.; Navratilova, M.; Szeszenia-Dabrowska, N.; Mates, D.; Schmidt, L. S.; Lenz, P.; Karami, S.; Linehan, W. M.; Merino, M.; Chanock, S.; Boffetta, P.; Chow, W. H.; Waldman, F. M.; Rothman, N.
  3. Plos Genetics. 2011, Oct; 7(10): 13.
  1. 8.   Frequent mutations of chromatin remodeling genes in transitional cell carcinoma of the bladder
  2. Gui, Y. T.; Guo, G. W.; Huang, Y.; Hu, X. D.; Tang, A. F.; Gao, S. J.; Wu, R. H.; Chen, C.; Li, X. X.; Zhou, L.; He, M. H.; Li, Z. S.; Sun, X. J.; Jia, W. L.; Chen, J. N.; Yang, S. M.; Zhou, F. J.; Zhao, X. K.; Wan, S. Q.; Ye, R.; Liang, C. Z.; Liu, Z. S.; Huang, P. D.; Liu, C. X.; Jiang, H.; Wang, Y.; Zheng, H. C.; Sun, L.; Liu, X. W.; Jiang, Z. M.; Feng, D. F.; Chen, J.; Wu, S.; Zou, J.; Zhang, Z. F.; Yang, R. L.; Zhao, J.; Xu, C. J.; Yin, W. H.; Guan, Z. C.; Ye, J. X.; Zhang, H.; Li, J. X.; Kristiansen, K.; Nickerson, M. L.; Theodorescu, D.; Li, Y. R.; Zhang, X. Q.; Li, S. G.; Wang, J.; Yang, H. M.; Cai, Z. M.
  3. Nature Genetics. 2011, Sep; 43(9): 875-U84.
  1. 9.   Identification of sequence polymorphism in the D-Loop region of mitochondrial DNA as a risk factor for hepatocellular carcinoma with distinct etiology
  2. Zhang, R. X.; Zhang, F. B.; Wang, C. J.; Wang, S. X.; Shiao, Y. H.; Guo, Z. J.
  3. Journal of Experimental & Clinical Cancer Research. 2010, Sep; 29: 7.
  1. 10.   Identification of FGFR4-activating mutations in human rhabdomyosarcomas that promote metastasis in xenotransplanted models
  2. Taylor, J. G.; Cheuk, A. T.; Tsang, P. S.; Chung, J. Y.; Song, Y. K.; Desai, K.; Yu, Y. L.; Chen, Q. R.; Shah, K.; Youngblood, V.; Fang, J.; Kim, S. Y.; Yeung, C.; Helman, L. J.; Mendoza, A.; Ngo, V.; Staudt, L. M.; Wei, J. S.; Khanna, C.
  3. Journal of Clinical Investigation. 2009 119(11): 3395-3407.
  1. 11.   Identification of the genes for kidney cancer: Opportunity for disease-specific targeted therapeutics
  2. Linehan, W. M.; Pinto, P. A.; Srinivasan, R.; Merino, M.; Choyke, P.; Choyke, L.; Coleman, J.; Toro, J.; Glenn, G.; Vocke, C.; Zbar, B.; Schmidt, L. S.; Bottaro, D.; Neckers, L.
  3. Clinical Cancer Research. 2007, Jan; 13(2): 671S-679S.
  1. 12.   High frequency of somatic frameshift BHD gene mutations in Birt-Hogg-Dube-associated renal tumors
  2. Vocke, C. D.; Yang, Y. F.; Pavlovich, C. P.; Schmidt, L. S.; Nickerson, M. L.; Torres-Cabala, C. A.; Merino, M. J.; Walther, M. M.; Zbar, B.; Linehan, W. M.
  3. Journal of the National Cancer Institute. 2005, JUN 15; 97(12): 931-935.
  1. 13.   Hereditary leiomyomatosis associated with bilateral, massive, macronodular adrenocortical disease and atypical Cushing syndrome: A clinical and molecular genetic investigation
  2. Matyakhina, L.; Freedman, R. J.; Bourdeau, I.; Wei, M. H.; Stergiopoulos, S. G.; Chidakel, A.; Walther, M.; bu-Asab, M.; Tsokos, M.; Keil, M.; Toro, J.; Linehan, W. M.; Stratakis, C. A.
  3. Journal of Clinical Endocrinology & Metabolism. 2005, JUN; 90(6): 3773-3779.
  1. 14.   Activating Met mutations produce unique tumor profiles in mice with selective duplication of the mutant allele
  2. Graveel, C.; Su, Y. L.; Koeman, J.; Wang, L. M.; Tessarollo, L.; Fiscella, M.; Birchmeier, C.; Swiatek, P.; Bronson, R.; Woude, G. V.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2004, DEC 7; 101(49): 17198-17203.
  1. 15.   Mutations in the VHL gene from potassium bromate-induced rat clear cell renal tumors
  2. Shiao, Y. H.; Kamata, S. I.; Li, L. M.; Hooth, M. J.; DeAngelo, A. B.; Anderson, L. M.; Wolf, D. C.
  3. Cancer Letters. 2002 187(1-2): 207-214.
  1. 16.   Genetic and functional analysis of the von Hippel-Lindau (VHL) tumour suppressor gene promoter
  2. Zatyka, M.; Morrissey, C.; Kuzmin, I.; Lerman, M. I.; Latif, F.; Richards, F. M.; Maher, E. R.
  3. Journal of Medical Genetics. 2002 39(7): 463-472.
  1. 17.   Dysregulation of Met receptor tyrosine kinase activity in invasive tumors
  2. Danilkovitch-Miagkova, A.; Zbar, B.
  3. Journal of Clinical Investigation. 2002 109(7): 863-867.
  1. 18.   Random mutagenesis-PCR to introduce alterations into defined DNA sequences for validation of SNP and mutation detection methods
  2. Nickerson, M. L.; Warren, M. B.; Zbar, B.; Schmidt, L. S.
  3. Human Mutation. 2001 17(3): 210-219.
  1. 19.   A novel germ line juxtamembrane Met mutation in human gastric cancer
  2. Lee, J. H.; Han, S. U.; Cho, H.; Jennings, B.; Gerrard, B.; Dean, M.; Schmidt, L.; Zbar, B.; Vande Woude, G. F.
  3. Oncogene. 2000 19(43): 4947-4953.
  1. 20.   VHL alterations in human clear cell renal cell carcinoma: Association with advanced tumor stage and a novel hot spot mutation
  2. Brauch, H.; Weirich, G.; Brieger, J.; Glavac, D.; Rodl, H.; Eichinger, M.; Feurer, M.; Weidt, E.; Puranakanitstha, C.; Neuhaus, C.; Pomer, S.; Brenner, W.; Schirmacher, P.; Storkel, S.; Rotter, M.; Masera, A.; Gugeler, N.; Decker, H. J.
  3. Cancer Research. 2000 60(7): 1942-1948.
  1. 21.   Transcription-dependent nuclear-cytoplasmic trafficking is required for the function of the von Hippel-Lindau tumor suppressor protein
  2. Lee, S.; Neumann, M.; Stearman, R.; Stauber, R.; Pause, A.; Pavlakis, G. N.; Klausner, R. D.
  3. Molecular and Cellular Biology. 1999 19(2): 1486-1497.
  1. 22.   Von-Hippel-Lindau Gene Mutations in N-Nitrosodimethylamine-Induced Rat Renal Epithelial Tumors
  2. Shiao, Y. H.; Rice, J. M.; Anderson, L. M.; Diwan, B. A.; Hard, G. C.
  3. Journal of the National Cancer Institute. 1998 90(22): 1720-1723.
  1. 23.   Inherited carcinomas of the kidney
  2. Zbar, B.; Lerman, M.
  3. Advances in cancer research. 1998 75: 163-201.
  1. 24.   Polymerase Chain Reaction Single-Strand Conformation Polymorphism Analysis For the Vhl Gene in Chemically Induced Kidney Tumors of Rats Using Intron-Derived Primers
  2. Shiao, Y. H.; Diwan, B. A.; Perantoni, A. O.; Calvert, R. J.; Zbar, B.; Lerman, M. I.; Rice, J. M.
  3. Molecular Carcinogenesis. 1997 19(4): 230-235.
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