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  1. 1.   Show your cap or be packaged into HIV-1
  2. Levin, Judith G.; Rein, Alan
  3. Proceedings of the National Academy of Sciences of The United States of America. 2021, Oct 5; 118(40):
  1. 2.   Antibody-mediated depletion of viral reservoirs is limited in SIV-infected macaques treated early with antiretroviral therapy
  2. Swanstrom,Adrienne; Immonen,Taina; Oswald,Kelli; Pyle,Cathi; Thomas,James; Bosche,Bj; Silipino,Lorna; Hull,Mike; Newman,Laura; Coalter, Vicky; Wiles,Adam; Wiles,Rodney; Kiser,Jacob; Morcock,David; Shoemaker,Rebecca; Fast,Randy; Breed,Matthew; Kramer,Josh; Donohue,Duncan; Malys,Tyler; Fennessey,Christine; Trubey,Charles; Deleage,Claire; Estes, Jacob D.; Lifson,Jeffrey; Keele,Brandon; Del Prete,Greg
  3. The Journal of Clinical Investigation. 2021, Mar 15; 131(6):
  1. 3.   Anti-V2 antibodies virus vulnerability revealed by envelope V1 deletion in HIV vaccine candidates
  2. de Castro, Isabela Silva; Gorini, Giacomo; Mason, Rosemarie; Gorman, Jason; Bissa, Massimiliano; Rahman, Mohammad A.; Arakelyan, Anush; Kalisz, Irene; Whitney, Stephen; Becerra-Flores, Manuel; Ni, Eric; Peachman, Kristina; Trinh, Hung; Read, Michael; Liu, Mei-Hue; Van Ryk, Donald; Paquin-Proulx, Dominic; Shubin, Zhanna; Tuyishime, Marina; Peele, Jennifer; Ahmadi, Mohammed S.; Verardi, Raffaello; Hill, Juliane; Beddall, Margaret; Nguyen, Richard; Stamos, James D.; Fujikawa, Dai; Min, Susie; Schifanella, Luca; Vaccari, Monica; Galli, Veronica; Doster, Melvin N.; Liyanage, Namal P. M.; Sarkis, Sarkis; Caccuri, Francesca; LaBranche, Celia; Montefiori, David C.; Tomaras, Georgia D.; Shen, Xiaoying; Rosati,Margherita; Felber, Barbara K.; Pavlakis,George; Venzon, David J.; Magnanelli, William; Breed, Matthew; Kramer, Josh; Keele, Brandon F.; Eller, Michael A.; Cicala, Claudia; Arthos, James; Ferrari, Guido; Margolis, Leonid; Robert-Guroff, Marjorie; Kwong, Peter D.; Roederer, Mario; Rao, Mangala; Cardozo, Timothy J.; Franchini, Genoveffa
  3. iScience. 2021, Feb 19; 24(2):
  1. 4.   The D2 and D3 sublineages of human papillomavirus 16-positive cervical cancer in Guatemala differ in integration rate and age of diagnosis
  2. Lou,Hong; Boland,Joseph; Torres-Gonzalez, Edmundo; Albanez, Anaseidy; Zhou,Weiyin; Steinberg,Mia; Diaw, Lena; Mitchell, Jason; Roberson, David; Cullen,Michael; Garland,Lisa; Bass,Sara; Burk, Robert D; Yeager,Meredith; Wentzensen, Nicolas; Schiffman, Mark; Alvirez Freites, Enrique; Gharzouzi, Eduardo; Mirabello, Lisa; Dean, Michael
  3. Cancer research. 2020, SEP 15; 80(18): 3803-3809.
  1. 5.   Distinct viral reservoirs in individuals with spontaneous control of HIV-1
  2. Jiang, Chenyang; Lian, Xiaodong; Gao, Ce; Sun, Xiaoming; Einkauf, Kevin B; Chevalier, Joshua M; Chen, Samantha M Y; Hua, Stephane; Rhee, Ben; Chang, Kaylee; Blackmer, Jane E; Osborn, Matthew; Peluso, Michael J; Hoh, Rebecca; Somsouk, Ma; Milush, Jeffrey; Bertagnolli, Lynn N; Sweet, Sarah E; Varriale, Joseph A; Burbelo, Peter D; Chun, Tae-Wook; Laird, Gregory M; Serrao, Erik; Engelman, Alan N; Carrington,Mary; Siliciano, Robert F; Siliciano, Janet M; Deeks, Steven G; Walker, Bruce D; Lichterfeld, Mathias; Yu, Xu G
  3. Nature. 2020, Aug 26;
  1. 6.   Subnanometer structures of HIV-1 envelope trimers on aldrithiol-2-inactivated virus particles
  2. Li, Ze; Li, Wenwei; Lu, Maolin; Bess,Julian; Chao, Cara W.; Gorman, Jason; Terry, Daniel S.; Zhang, Baoshan; Zhou, Tongqing; Blanchard, Scott C.; Kwong, Peter D.; Lifson, Jeffrey D.; Mothes, Walther; Liu, Jun
  3. Nature structural & molecular biology. 2020, Jun 29;
  1. 7.   Co-immunization of DNA and Protein in the Same Anatomical Sites Induces Superior Protective Immune Responses against SHIV Challenge
  2. Felber,Barbara; Lu, Zhongyan; Hu, Xintao; Valentin,Antonio; Rosati,Margherita; Remmel, Christopher A L; Weiner, Joshua A; Carpenter, Margaret C; Faircloth, Katelyn; Stanfield-Oakley, Sherry; Williams, Wilton B; Shen, Xiaoying; Tomaras, Georgia D; LaBranche, Celia C; Montefiori, David; Trinh, Hung V; Rao, Mangala; Alam, Munir S; Vandergrift, Nathan A; Saunders, Kevin O; Wang, Yunfei; Rountree, Wes; Das, Jishnu; Alter, Galit; Reed, Steven G; Aye, Pyone P; Schiro, Faith; Pahar, Bapi; Dufour, Jason P; Veazey, Ronald S; Marx, Preston A; Venzon, David J; Shaw, George M; Ferrari, Guido; Ackerman, Margaret E; Haynes, Barton F; Pavlakis,George
  3. Cell reports. 2020, May 12; 31(6): 107624.
  1. 8.   Loss of tetherin antagonism by Nef impairs SIV replication during acute infection of rhesus macaques
  2. Tavakoli-Tameh, Aidin; Janaka, Sanath Kumar; Zarbock, Katie; O'Connor, Shelby; Crosno, Kristin; Capuano, Saverio; Uno, Hajime; Lifson,Jeffrey; Evans, David T
  3. PLoS pathogens. 2020, Apr 17; 16(4): e1008487.
  1. 9.   Mutations in the HPV16 genome induced by APOBEC3 are associated with viral clearance
  2. Zhu, Bin; Xiao, Yanzi; Yeager,Meredith; Clifford, Gary; Wentzensen, Nicolas; Cullen,Michael; Boland,Joseph; Bass,Sara; Steinberg,Mia; Raine-Bennett, Tina; Lee, DongHyuk; Burk, Robert D; Pinheiro, Maisa; Song,Lei; Dean, Michael; Nelson, Chase W; Burdett,Laurie; Yu, Kai; Roberson, David; Lorey, Thomas; Franceschi, Silvia; Castle, Philip E; Walker, Joan; Zuna, Rosemary; Schiffman, Mark; Mirabello, Lisa
  3. Nature communications. 2020, Feb 14; 11(1): pii: 10.1038/s41467-020-14730-1.
  1. 10.   Complete Genome Sequence of Herpes Simplex Virus 1 Strain MacIntyre
  2. Jiao,Xiaoli; Sui,Hongyan; Lyons, Christopher; Tran,Bao; Sherman,Brad; Imamichi,Tomozumi
  3. Microbiology resource announcements. 2019, Sep 12; 8(37): pii: e00895-19.
  1. 11.   No evidence of ongoing HIV replication or compartmentalization in tissues during combination antiretroviral therapy: Implications for HIV eradication
  2. Bozzi, G; Simonetti, F R; Watters, S A; Anderson, E M; Gouzoulis, M; Kearney,Mary; Rote, P; Lange,Camille; Shao,Wei; Gorelick,Robert; Fullmer,Brandie; Kumar, S; Wank, S; Hewitt, S; Kleiner, D E; Hattori, J; Bale,Michael; Hill,Shawn; Bell,Jennifer; Rehm, C; Grossman,Zehava; Yarchoan, R; Uldrick, T; Maldarelli,Frank
  3. Science advances. 2019, Sep; 5(9): eaav2045.
  1. 12.   AAV-delivered eCD4-Ig protects rhesus macaques from high-dose SIVmac239 challenges
  2. Gardner, Matthew R; Fellinger, Christoph H; Kattenhorn, Lisa M; Davis-Gardner, Meredith E; Weber, Jesse A; Alfant, Barnett; Zhou, Amber S; Prasad, Neha R; Kondur, Hema R; Newton, Wendy A; Weisgrau, Kimberly L; Rakasz, Eva G; Lifson,Jeffrey; Gao, Guangping; Schultz-Darken, Nancy; Farzan, Michael
  3. Science translational medicine. 2019, Jul 24; 11(502): pii: eaau5409.
  1. 13.   Inhibition of HIV Maturation via Selective Unfolding and Cross-Linking of Gag Polyprotein by a Mercaptobenzamide Acetylator
  2. Jenkins, Lisa M. Miller; Paine, Elliott L.; Deshmukh, Lalit; Nikolayevskiy, Herman; Lyons, Gaelyn C.; Scerba, Michael T.; Rosenker, Kara George; Luecke, Hans F.; Louis, John M.; Chertova,Elena; Gorelick,Robert; Ott,David; Clore, G. Marius; Appella, Daniel H.
  3. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 2019, MAY 22; 141(20): 8327-8338.
  1. 14.   Phylogenetic inference for the study of within-host HIV-1 dynamics and persistence on antiretroviral therapy
  2. Capoferri, Adam A.; Bale,Michael; Simonetti, Francesco R.; Kearney,Mary
  3. The lancet. HIV. 2019, May; 6(5): E325-E333.
  1. 15.   Rational design and in vivo selection of SHIVs encoding transmitted/founder subtype C HIV-1 envelopes
  2. O'Brien,Sean; Swanstrom,Adrienne; Pegu, Amarendra; Ko, Sung-Youl; Immonen,Taina; Del Prete,Greg; Fennessey,Christine; Gorman, Jason; Foulds, Kathryn E.; Schmidt, Stephen D.; Doria-Rose, Nicole; Williamson, Carolyn; Hatziioannou, Theodora; Bieniasz, Paul D.; Li, Hui; Shaw, George M.; Mascola, John R.; Koup, Richard A.; Kwong, Peter D.; Lifson,Jeffrey; Roederer, Mario; Keele,Brandon
  3. PLoS pathogens. 2019, APR; 15(4): e1007632.
  1. 16.   Anti-drug Antibody Responses Impair Prophylaxis Mediated by AAV-Delivered HIV-1 Broadly Neutralizing Antibodies
  2. Gardner, Matthew R.; Fetzer, Ina; Kattenhorn, Lisa M.; Davis-Gardner, Meredith E.; Zhou, Amber S.; Alfant, Barnett; Weber, Jesse A.; Kondur, Hema R.; Martinez-Navio, Jose M.; Fuchs, Sebastian P.; Desrosiers, Ronald C.; Gao, Guangping; Lifson,Jeffrey; Farzan, Michael
  3. Molecular therapy : the journal of the American Society of Gene Therapy. 2019, Mar 6; 27(3): 650-660.
  1. 17.   Recombination is required for efficient HIV-1 replication and the maintenance of viral genome integrity
  2. Rawson,Jonathan; Nikolaitchik,Olga; Keele,Brandon; Pathak,Vinay; Hu,Wei-Shau
  3. NUCLEIC ACIDS RESEARCH. 2018, Nov 16; 46(20): 10535-10545.
  1. 18.   Killer cell immunoglobulin-like receptor 3DL1 variation modifies HLA-B*57 protection against HIV-1
  2. Martin, Pat; Naranbhai, Vivek; Shea, Patrick R.; Qi, Ying; Ramsuran, Veron; Vince, Nicolas; Gao, Xiaojiang; Thomas, Rasmi; Brumme, Zabrina L.; Carlson, Jonathan M.; Wolinsky, Steven M.; Goedert, James J.; Walker, Bruce D.; Segal, Florencia P.; Deeks, Steven G.; Haas, David W.; Migueles, Stephen A.; Connors, Mark; Michael, Nelson; Fellay, Jacques; Gostick, Emma; Llewellyn-Lacey, Sian; Price, David A.; Lafont, Bernard A.; Pymm, Phillip; Saunders, Philippa M.; Widjaja, Jacqueline; Wong, Shu Cheng; Vivian, Julian P.; Rossjohn, Jamie; Brooks, Andrew G.; Carrington, Mary
  3. Journal of Clinical Investigation. 2018, May 01; 128(5): 1903-1912.
  1. 19.   RAS Proteins and Their Regulators in Human Disease
  2. Simanshu, Dhirendra; Nissley, Dwight; McCormick, Frank
  3. Cell. 2017, Jun 29; 170(1): 17-33.
  1. 20.   HIV-1 Capsid-Targeting Domain of Cleavage and Polyadenylation Specificity Factor 6
  2. Lee, K.; Mulky, A.; Yuen, W.; Martin, T. D.; Meyerson, N. R.; Choi, L.; Yu, H.; Sawyer, S. L.; KewalRamani, V. N.
  3. Journal of Virology. 2012, Apr; 86(7): 3851-3860.
  1. 21.   Generation of Transmitted/Founder HIV-1 Infectious Molecular Clones and Characterization of Their Replication Capacity in CD4 T Lymphocytes and Monocyte-Derived Macrophages
  2. Ochsenbauer, C.; Edmonds, T. G.; Ding, H. T.; Keele, B. F.; Decker, J.; Salazar, M. G.; Salazar-Gonzalez, J. F.; Shattock, R.; Haynes, B. F.; Shaw, G. M.; Hahn, B. H.; Kappes, J. C.
  3. Journal of Virology. 2012, Mar; 86(5): 2715-2728.
  1. 22.   Genomic HIV RNA Induces Innate Immune Responses through RIG-I-Dependent Sensing of Secondary-Structured RNA
  2. Berg, R. K.; Melchjorsen, J.; Rintahaka, J.; Diget, E.; Soby, S.; Horan, K. A.; Gorelick, R. J.; Matikainen, S.; Larsen, C. S.; Ostergaard, L.; Paludan, S. R.; Mogensen, T. H.
  3. Plos One. 2012, Jan; 7(1):
  1. 23.   Molecular Dynamics Approaches Estimate the Binding Energy of HIV-1 Integrase Inhibitors and Correlate with In Vitro Activity
  2. Johnson, B. C.; Metifiot, M.; Pommier, Y.; Hughes, S. H.
  3. Antimicrobial Agents and Chemotherapy. 2012, Jan; 56(1): 411-419.
  1. 24.   Localization of ASV Integrase-DNA Contacts by Site-Directed Crosslinking and their Structural Analysis
  2. Peletskaya, E.; Andrake, M.; Gustchina, A.; Merkel, G.; Alexandratos, J.; Zhou, D. W.; Bojja, R. S.; Satoh, T.; Potapov, M.; Kogon, A.; Potapov, V.; Wlodawer, A.; Skalka, A. M.
  3. Plos One. 2011, Dec; 6(12):
  1. 25.   Three-Dimensional Structures of Soluble CD4-Bound States of Trimeric Simian Immunodeficiency Virus Envelope Glycoproteins Determined by Using Cryo-Electron Tomography
  2. White, T. A.; Bartesaghi, A.; Borgnia, M. J.; de la Cruz, M. J. V.; Nandwani, R.; Hoxie, J. A.; Bess, J. W.; Lifson, J. D.; Milne, J. L. S.; Subramaniam, S.
  3. Journal of Virology. 2011, Dec; 85(23): 12114-12123.
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