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  1. 1.   SomaticCombiner: improving the performance of somatic variant calling based on evaluation tests and a consensus approach
  2. Wang,Mingyi; Luo,Wen; Jones,Kristine; Bian, Xiaopeng; Williams,Russell; Higson,Herbert; Wu,Dongjing; Hicks,Belynda; Yeager,Meredith; Zhu,Bin
  3. Scientific reports. 2020, Jul 30; 10(1): 12898.
  1. 2.   MPGAfold in dengue secondary structure prediction
  2. Kasprzak, W. K.; Shapiro, B. A.
  3. Methods in molecular biology (Clifton, N.J.). 2014, 20-Feb; 1138: 199-224.
  1. 3.   Multistrand RNA Secondary Structure Prediction and Nanostructure Design Including Pseudoknots
  2. Bindewald, E.; Afonin, K.; Jaeger, L.; Shapiro, B. A.
  3. Acs Nano. 2011, Dec; 5(12): 9542-9551.
  1. 4.   SymmRef: A flexible refinement method for symmetric multimers
  2. Mashiach-Farkash, E.; Nussinov, R.; Wolfson, H. J.
  3. Proteins-Structure Function and Bioinformatics. 2011, Sep; 79(9): 2607-2623.
  1. 5.   Feature Identification via a Combined ICA-Wavelet Method for Image Information Mining
  2. Shah, V. P.; Younan, N. H.; Durbha, S. S.; King, R. L.
  3. Ieee Geoscience and Remote Sensing Letters. 2010, Jan; 7(1): 18-22.
  1. 6.   Computational intelligence, bioinformatics and computational biology: A brief overview of methods, problems and perspectives
  2. Kasabov, N.; Sidorov, I. A.; Dimitrov, D. S.
  3. Journal of Computational and Theoretical Nanoscience. 2005, DEC; 2(4): 473-491.
  1. 7.   Combinatorial docking approach for structure prediction of large proteins and multi-molecular assemblies
  2. Inbar, Y.; Benyamini, H.; Nussinov, R.; Wolfson, H. J.
  3. Physical Biology. 2005, DEC; 2(4, Sp. Iss.): S156-S165.
  1. 8.   Low molecular weight proteomic information distinguishes metastatic from benign pheochromocytoma
  2. Brouwers, F. M.; Petricoin, E. F.; Ksinantova, L.; Breza, J.; Rajapakse, V.; Ross, S.; Johann, D.; Mannelli, M.; Shulkin, B. L.; Kvetnansky, R.; Eisenhofer, G.; Walther, M. M.; Hitt, B. A.; Conrads, T. P.; Veenstra, T. D.; Mannion, D. P.; Wall, M. R.; Wolfe, G. M.; Fusaro, V. A.; Liotta, L. A.; Pacak, K.
  3. Endocrine-Related Cancer. 2005, JUN; 12(2): 263-272.
  1. 9.   Big cat genomics
  2. O'Brien, S. J.; Johnson, W. E.
  3. Annual review of genomics and human genetics. 2005 6: 407-429.
  1. 10.   A potential role for imaging technology in anticancer efficacy evaluations
  2. Hollingshead, M. G.; Bonomi, C. A.; Borgel, S. D.; Carter, J. P.; Shoemaker, R.; Melillo, G.; Sausville, E. A.
  3. European Journal of Cancer. 2004 40(6): 890-898.
  1. 11.   FlexProt: Alignment of flexible protein structures without a predefinition of hinge regions
  2. Shatsky, M.; Nussinov, R.; Wolfson, H. J.
  3. Journal of Computational Biology. 2004 11(1): 83-106.
  1. 12.   Predicting molecular interactions in silico: I. A guide to pharmacophore identification and its applications to drug design
  2. Dror, O.; Shulman-Peleg, A.; Nussinov, R.; Wolfson, H. J.
  3. Current Medicinal Chemistry. 2004 11(1): 71-90.
  1. 13.   Predicting molecular interactions in silico: II. Protein- protein and protein-drug docking
  2. Schneidman-Duhovny, D.; Nussinov, R.; Wolfson, H. J.
  3. Current Medicinal Chemistry. 2004 11(1): 91-107.
  1. 14.   An exhaustive DNA micro-satellite map of the human genome using high performance computing
  2. Collins, J. R.; Stephens, R. M.; Gold, B.; Long, B.; Dean, M.; Burt, S. K.
  3. Genomics. 2003 82(1): 10-19.
  1. 15.   SiteLight: Binding-site prediction using phage display libraries
  2. Halperin, I.; Wolfson, H.; Nussinov, R.
  3. Protein Science. 2003 12(7): 1344-1359.
  1. 16.   Integrating advanced algorithms to enhance docking and drug design
  2. Nussinov, R.
  3. Abstracts of Papers of the American Chemical Society. 2003 225(Part 1): U743-U743.
  1. 17.   Flexible protein alignment and hinge detection
  2. Shatsky, M.; Nussinov, R.; Wolfson, H. J.
  3. Proteins-Structure Function and Genetics. 2002 48(2): 242-256.
  1. 18.   Multiple diverse ligands binding at a single protein site: A matter of pre-existing populations
  2. Ma, B. Y.; Shatsky, M.; Wolfson, H. J.; Nussinov, R.
  3. Protein Science. 2002 11(2): 184-197.
  1. 19.   Segmentation of nuclei and cells using membrane related protein markers
  2. de Solorzano, C. O.; Malladi, R.; Lelievre, S. A.; Lockett, S. J.
  3. Journal of Microscopy. 2001 201(Pt. 3): 404-415.
  1. 20.   MUSTA - A general, efficient, automated method for multiple structure alignment and detection of common motifs: Application to proteins
  2. Leibowitz, N.; Nussinov, R.; Wolfson, H. J.
  3. Journal of Computational Biology. 2001 8(2): 93-121.
  1. 21.   RNA folding pathway functional intermediates: Their prediction and analysis
  2. Shapiro, B. A.; Bengali, D.; Kasprzak, W.; Wu, J. C.
  3. Journal of Molecular Biology. 2001 312(1): 27-44.
  1. 22.   New techniques for DNA sequence classification
  2. Wang, J. T. L.; Rozen, S.; Shapiro, B. A.; Shasha, D.; Wang, Z. Y.; Yin, M. S.
  3. Journal of Computational Biology. 1999 6(2): 209-218.
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